Experiment set1IT042 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with sodium fluoride 25 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23605 +6.6 12.2 alkaline phosphatase compare
CA265_RS23560 +4.5 18.7 DNA-binding protein compare
CA265_RS23565 +3.3 3.4 NADH dehydrogenase compare
CA265_RS22645 +2.8 6.3 tryptophan 2,3-dioxygenase compare
CA265_RS08685 +2.6 22.6 fructose-6-phosphate aldolase compare
CA265_RS18780 +2.4 14.1 YicC family protein compare
CA265_RS04385 +2.0 8.1 hypothetical protein compare
CA265_RS23155 +1.9 14.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS14990 +1.9 4.0 amino acid transporter compare
CA265_RS13225 +1.8 13.1 exonuclease compare
CA265_RS10470 +1.6 13.5 amidinotransferase compare
CA265_RS23510 +1.6 8.2 energy transducer TonB compare
CA265_RS00665 +1.6 5.5 lysine transporter LysE compare
CA265_RS15045 +1.5 12.4 MFS transporter compare
CA265_RS10475 +1.4 8.0 amidinotransferase compare
CA265_RS14535 +1.4 5.4 DUF4783 domain-containing protein compare
CA265_RS09840 +1.4 2.5 YajQ family cyclic di-GMP-binding protein compare
CA265_RS10910 +1.4 9.8 iron/manganese transporter compare
CA265_RS04885 +1.2 2.7 tRNA-Gly compare
CA265_RS18540 +1.2 5.0 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS10530 +1.2 8.9 ribonuclease R compare
CA265_RS18530 +1.2 3.6 aspartate aminotransferase family protein compare
CA265_RS08070 +1.2 2.7 tRNA-Ser compare
CA265_RS16105 +1.2 3.0 hypothetical protein compare
CA265_RS12940 +1.1 4.9 peptidase dimerization domain protein compare
CA265_RS09720 +1.1 7.4 transglycosylase compare
CA265_RS19575 +1.1 3.3 glycoside hydrolase compare
CA265_RS23505 +1.1 4.1 biopolymer transporter ExbD compare
CA265_RS15000 +1.0 7.8 amino acid permease compare
CA265_RS23750 +1.0 4.1 translational GTPase TypA compare
CA265_RS16130 +1.0 3.2 cell division protein FtsX compare
CA265_RS21905 +1.0 4.5 hypothetical protein compare
CA265_RS25235 +1.0 6.9 hypothetical protein compare
CA265_RS13255 +0.9 5.2 leucine dehydrogenase compare
CA265_RS23425 +0.9 3.2 N-acetylmuramic acid 6-phosphate etherase compare
CA265_RS09455 +0.9 8.3 FUSC family protein compare
CA265_RS24385 +0.9 2.1 GNAT family N-acetyltransferase compare
CA265_RS24255 +0.9 4.7 sugar kinase compare
CA265_RS25185 +0.9 1.9 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS18805 +0.9 1.7 hypothetical protein compare
CA265_RS06200 +0.9 5.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
CA265_RS10835 +0.9 7.5 AMP-binding protein compare
CA265_RS18660 +0.9 4.7 SAM-dependent methyltransferase compare
CA265_RS03600 +0.9 6.3 hypothetical protein compare
CA265_RS15615 +0.8 3.7 malate dehydrogenase compare
CA265_RS24780 +0.8 3.7 nucleoside-diphosphate kinase compare
CA265_RS11120 +0.8 5.4 phosphohydrolase compare
CA265_RS11610 +0.8 1.6 RNA-binding protein S4 compare
CA265_RS21900 +0.8 6.6 two-component sensor histidine kinase compare
CA265_RS14020 +0.8 6.2 ABC transporter ATP-binding protein compare
CA265_RS08825 +0.8 5.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
CA265_RS04650 +0.8 5.8 two-component sensor histidine kinase compare
CA265_RS14125 +0.7 1.2 hypothetical protein compare
CA265_RS17315 +0.7 1.5 hypothetical protein compare
CA265_RS18495 +0.7 2.0 hypothetical protein compare
CA265_RS19165 +0.7 2.1 serine hydroxymethyltransferase compare
CA265_RS18260 +0.7 1.4 hypothetical protein compare
CA265_RS15095 +0.7 3.6 CBS domain-containing protein compare
CA265_RS02215 +0.7 5.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
CA265_RS15580 +0.7 5.1 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS04645 +0.7 5.1 cation transporter compare
CA265_RS24605 +0.7 1.2 hypothetical protein compare
CA265_RS19740 +0.7 3.4 gliding motility lipoprotein GldD compare
CA265_RS04655 +0.7 5.1 DNA-binding response regulator compare
CA265_RS08660 +0.7 1.9 glyoxalase compare
CA265_RS16325 +0.7 2.1 CsbD family protein compare
CA265_RS19000 +0.7 5.6 NADP-dependent malic enzyme compare
CA265_RS24820 +0.7 3.1 adenylate cyclase compare
CA265_RS16635 +0.7 5.7 methylmalonyl-CoA carboxyltransferase compare
CA265_RS19815 +0.7 5.3 RlmI/RlmK family 23S rRNA methyltransferase compare
CA265_RS09045 +0.7 4.9 ABC transporter permease compare
CA265_RS04640 +0.7 3.9 efflux transporter periplasmic adaptor subunit compare
CA265_RS19025 +0.7 2.1 peptidase M23 compare
CA265_RS24700 +0.7 3.1 hypothetical protein compare
CA265_RS03565 +0.7 3.9 phosphonate ABC transporter ATP-binding protein compare
CA265_RS18120 +0.7 5.4 gliding motility protein GldM compare
CA265_RS25215 +0.7 3.4 MBL fold hydrolase compare
CA265_RS04635 +0.6 5.6 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS23985 +0.6 3.9 gliding motility lipoprotein GldB compare
CA265_RS24130 +0.6 2.3 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS23515 +0.6 3.3 hypothetical protein compare
CA265_RS18500 +0.6 4.2 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS06520 +0.6 3.4 hypothetical protein compare
CA265_RS18990 +0.6 5.8 cell surface protein SprA compare
CA265_RS15265 +0.6 3.5 TetR family transcriptional regulator compare
CA265_RS02965 +0.6 3.2 hypothetical protein compare
CA265_RS11670 +0.6 3.6 hypothetical protein compare
CA265_RS04140 +0.6 4.7 glycogen synthase compare
CA265_RS12780 +0.6 1.3 hypothetical protein compare
CA265_RS08765 +0.6 3.2 response regulator compare
CA265_RS07850 +0.6 3.9 hypothetical protein compare
CA265_RS07925 +0.6 3.2 hypothetical protein compare
CA265_RS17125 +0.6 1.8 DNA-binding response regulator compare
CA265_RS04145 +0.6 4.1 glucose-1-phosphate adenylyltransferase compare
CA265_RS16020 +0.6 3.5 ABC transporter ATP-binding protein compare
CA265_RS21135 +0.6 3.3 hypothetical protein compare
CA265_RS18090 +0.6 4.7 gliding motility protein compare
CA265_RS20320 +0.6 5.1 hypothetical protein compare
CA265_RS17950 +0.6 2.5 hypothetical protein compare
CA265_RS17720 +0.6 4.8 hypothetical protein compare
CA265_RS03115 +0.6 1.3 peroxiredoxin compare
CA265_RS10150 +0.6 2.1 cysteine synthase B compare
CA265_RS18115 +0.6 3.9 gliding motility protein GldN compare
CA265_RS03260 +0.5 3.9 multidrug ABC transporter ATP-binding protein compare
CA265_RS16225 +0.5 1.2 hypothetical protein compare
CA265_RS15115 +0.5 3.3 porin compare
CA265_RS24940 +0.5 2.5 hypothetical protein compare
CA265_RS18465 +0.5 3.0 RNA-splicing ligase RtcB compare
CA265_RS14360 +0.5 1.6 preprotein translocase subunit SecA compare
CA265_RS17710 +0.5 3.5 hypothetical protein compare
CA265_RS19940 +0.5 4.5 hypothetical protein compare
CA265_RS17715 +0.5 5.1 hypothetical protein compare
CA265_RS19655 +0.5 2.9 carboxymuconolactone decarboxylase family protein compare
CA265_RS10390 +0.5 2.0 hypothetical protein compare
CA265_RS03595 +0.5 1.8 hydrolase compare
CA265_RS20315 +0.5 4.4 hypothetical protein compare
CA265_RS03385 +0.5 2.1 hypothetical protein compare
CA265_RS03615 +0.5 3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
CA265_RS01960 +0.5 0.8 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS19620 +0.5 2.9 hypothetical protein compare
CA265_RS10545 +0.5 1.7 hypothetical protein compare
CA265_RS21395 +0.5 1.4 hypothetical protein compare
CA265_RS21910 +0.5 3.6 glycoside hydrolase compare
CA265_RS14435 +0.5 2.2 GNAT family N-acetyltransferase compare
CA265_RS06250 +0.5 1.3 RNA polymerase subunit sigma-70 compare
CA265_RS06400 +0.5 2.5 DNA-binding response regulator compare
CA265_RS12285 +0.5 1.3 rubrerythrin family protein compare
CA265_RS07245 +0.5 2.7 hypothetical protein compare
CA265_RS10775 +0.5 1.1 hypothetical protein compare
CA265_RS02655 +0.5 2.3 hypothetical protein compare
CA265_RS21600 +0.5 2.3 hypothetical protein compare
CA265_RS09400 +0.5 1.9 hypothetical protein compare
CA265_RS22395 +0.5 1.6 VOC family virulence protein compare
CA265_RS07220 +0.5 2.6 D-mannonate oxidoreductase compare
CA265_RS18815 +0.5 2.4 hydrolase TatD compare
CA265_RS23525 +0.5 3.2 hypothetical protein compare
CA265_RS07515 +0.5 3.0 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS18380 +0.5 1.8 ribose 5-phosphate isomerase B compare
CA265_RS05420 +0.5 0.8 hypothetical protein compare
CA265_RS12635 +0.5 2.4 molybdopterin synthase sulfur carrier subunit compare
CA265_RS21130 +0.5 2.9 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS15040 +0.5 2.1 cytidine deaminase compare
CA265_RS08820 +0.4 2.4 hypothetical protein compare
CA265_RS15005 +0.4 3.3 porin compare
CA265_RS03715 +0.4 1.3 hypothetical protein compare
CA265_RS15550 +0.4 2.4 hypothetical protein compare
CA265_RS10540 +0.4 1.2 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS20270 +0.4 1.7 methionine--tRNA ligase compare
CA265_RS02190 +0.4 1.5 hypothetical protein compare
CA265_RS03290 +0.4 2.7 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS08085 +0.4 2.9 aminodeoxychorismate lyase compare
CA265_RS07425 +0.4 1.9 GLPGLI family protein compare
CA265_RS16985 +0.4 1.1 hypothetical protein compare
CA265_RS16015 +0.4 2.9 ABC transporter permease compare
CA265_RS21870 +0.4 2.6 DNA-binding response regulator compare
CA265_RS06575 +0.4 2.8 MFS transporter compare
CA265_RS15035 +0.4 1.7 prevent-host-death protein compare
CA265_RS22035 +0.4 0.8 hypothetical protein compare
CA265_RS00250 +0.4 2.7 oxidoreductase compare
CA265_RS02145 +0.4 3.3 1,4-alpha-glucan branching enzyme compare
CA265_RS23520 +0.4 3.2 phosphate ABC transporter substrate-binding protein compare
CA265_RS18130 +0.4 3.3 gliding motility-associated lipoprotein compare
CA265_RS20195 +0.4 1.1 hypothetical protein compare
CA265_RS01150 +0.4 2.1 hypothetical protein compare
CA265_RS01320 +0.4 1.2 hypothetical protein compare
CA265_RS14640 +0.4 0.8 UDP-glucose 4-epimerase compare
CA265_RS18080 +0.4 2.3 hypothetical protein compare
CA265_RS16035 +0.4 2.5 oxidoreductase compare
CA265_RS03835 +0.4 1.2 hypothetical protein compare
CA265_RS04820 +0.4 2.7 GntR family transcriptional regulator compare
CA265_RS16495 +0.4 2.4 hypothetical protein compare
CA265_RS03900 +0.4 2.3 hypothetical protein compare
CA265_RS18125 +0.4 2.3 gliding motility protein GldL compare
CA265_RS03475 +0.4 3.4 glutamate dehydrogenase compare
CA265_RS16480 +0.4 3.1 hypothetical protein compare
CA265_RS16370 +0.4 2.0 hypothetical protein compare
CA265_RS20730 +0.4 2.0 hypothetical protein compare
CA265_RS19720 +0.4 3.3 sodium transporter compare
CA265_RS08445 +0.4 0.7 endonuclease compare
CA265_RS04835 +0.4 2.0 dihydrodipicolinate synthetase compare
CA265_RS21295 +0.4 1.8 hypothetical protein compare
CA265_RS08570 +0.4 1.1 dehydratase compare
CA265_RS00395 +0.4 0.7 hypothetical protein compare
CA265_RS21555 +0.4 1.8 hypothetical protein compare
CA265_RS25260 +0.4 1.9 hypothetical protein compare
CA265_RS06585 +0.4 2.0 hypothetical protein compare
CA265_RS22535 +0.4 1.4 hypothetical protein compare
CA265_RS03160 +0.4 1.5 hydrolase compare
CA265_RS21620 +0.4 2.2 hybrid sensor histidine kinase/response regulator compare
CA265_RS06930 +0.4 1.6 hypothetical protein compare
CA265_RS10750 +0.4 2.2 SMC-Scp complex subunit ScpB compare
CA265_RS14825 +0.4 0.9 outer membrane protein assembly factor BamD compare
CA265_RS07935 +0.4 2.8 hypothetical protein compare
CA265_RS25355 +0.4 2.1 DUF2807 domain-containing protein compare
CA265_RS07930 +0.4 2.5 group 1 glycosyl transferase compare
CA265_RS03295 +0.4 2.8 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS18770 +0.4 1.6 hypothetical protein compare
CA265_RS10385 +0.4 1.1 hypothetical protein compare
CA265_RS00940 +0.4 1.1 hypothetical protein compare
CA265_RS15070 +0.4 1.6 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress sodium fluoride in Pedobacter sp. GW460-11-11-14-LB5

For stress sodium fluoride across organisms