Experiment set1IT042 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium D,L-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS10315 +2.1 4.5 flagellar hook-basal body protein FliE compare
HSERO_RS01825 +2.1 7.7 RNA pyrophosphohydrolase compare
HSERO_RS10215 +2.1 10.7 flagellar P-ring protein FlgI compare
HSERO_RS02425 +1.9 9.1 transcriptional activator compare
HSERO_RS10175 +1.9 6.1 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10200 +1.8 6.8 flagellar basal body rod protein FlgF compare
HSERO_RS10285 +1.8 12.2 flagellar hook-length control protein compare
HSERO_RS21095 +1.7 10.2 UDP-glucose 4-epimerase compare
HSERO_RS18090 +1.7 2.1 II family cellulose-binding protein compare
HSERO_RS10160 +1.7 6.5 flagellar biosynthesis sigma factor compare
HSERO_RS21110 +1.7 10.3 dTDP-glucose 4,6-dehydratase compare
HSERO_RS01505 +1.7 4.0 transketolase compare
HSERO_RS00965 +1.7 1.9 trehalose-phosphatase compare
HSERO_RS10310 +1.7 12.7 flagellar M-ring protein FliF compare
HSERO_RS10145 +1.7 9.7 flagellar biosynthesis protein FlhA compare
HSERO_RS21085 +1.6 10.4 glycosyl transferase family 1 compare
HSERO_RS10305 +1.6 7.3 flagellar motor switch protein FliG compare
HSERO_RS07025 +1.6 3.4 ATP-dependent Clp protease ClpS compare
HSERO_RS10260 +1.6 8.2 flagellar biosynthesis protein FliP compare
HSERO_RS10190 +1.6 6.5 flagellar basal body rod modification protein FlgD compare
HSERO_RS10205 +1.6 5.0 flagellar basal body rod protein FlgG compare
HSERO_RS10140 +1.6 7.1 flagellar biosynthesis protein FlhB compare
HSERO_RS13885 +1.6 7.4 histidine kinase compare
HSERO_RS10185 +1.6 8.3 flagellar basal body rod protein FlgC compare
HSERO_RS13890 +1.6 6.1 LuxR family transcriptional regulator compare
HSERO_RS23885 +1.5 9.1 XRE family transcriptional regulator compare
HSERO_RS05855 +1.5 7.4 flagellar motor protein MotA compare
HSERO_RS10195 +1.5 7.0 flagellar hook protein FlgE compare
HSERO_RS14320 +1.4 2.4 FmdB family transcriptional regulator compare
HSERO_RS10295 +1.4 4.9 ATP synthase compare
HSERO_RS10250 +1.4 6.8 flagellar biosynthesis protein FliR compare
HSERO_RS02350 +1.4 6.3 diadenosine tetraphosphatase compare
HSERO_RS10255 +1.4 4.8 flagellar biosynthesis protein FliQ compare
HSERO_RS04135 +1.4 2.7 amidohydrolase compare
HSERO_RS16825 +1.4 3.9 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS14985 +1.4 7.1 transcriptional regulator compare
HSERO_RS10275 +1.4 5.4 flagellar motor switch protein FliM compare
HSERO_RS12220 +1.4 1.5 dehydrogenase compare
HSERO_RS10265 +1.3 3.0 flagellar biosynthesis protein FliO compare
HSERO_RS10290 +1.3 2.4 flagellar biosynthesis protein FliJ compare
HSERO_RS21500 +1.3 5.0 hypothetical protein compare
HSERO_RS04170 +1.3 2.1 hypothetical protein compare
HSERO_RS10150 +1.3 9.6 flagellar biosynthesis regulator FlhF compare
HSERO_RS22615 +1.2 2.2 transcriptional regulator compare
HSERO_RS21480 +1.2 1.7 transcriptional regulator compare
HSERO_RS22075 +1.2 3.3 phosphohexose mutase compare
HSERO_RS22065 +1.2 3.5 EpiA compare
HSERO_RS06935 +1.2 1.3 RNA-binding protein compare
HSERO_RS04155 +1.2 1.8 hypothetical protein compare
HSERO_RS01915 +1.2 4.8 membrane protein compare
HSERO_RS08645 +1.2 3.1 RNA polymerase sigma70 factor compare
HSERO_RS08530 +1.2 5.4 glycine/betaine ABC transporter permease compare
HSERO_RS10280 +1.2 1.7 flagellar basal body protein FliL compare
HSERO_RS18455 +1.1 3.1 phosphoglycolate phosphatase compare
HSERO_RS02760 +1.1 1.7 hypothetical protein compare
HSERO_RS13040 +1.1 1.6 hypothetical protein compare
HSERO_RS03920 +1.1 1.6 hypothetical protein compare
HSERO_RS23655 +1.1 2.5 phosphonate ABC transporter permease compare
HSERO_RS16305 +1.1 2.2 hypothetical protein compare
HSERO_RS01880 +1.1 2.3 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS01325 +1.1 3.2 cation/multidrug efflux protein compare
HSERO_RS10180 +1.0 1.5 flagellar biosynthesis protein FlgB compare
HSERO_RS10750 +1.0 1.7 hypothetical protein compare
HSERO_RS10765 +1.0 2.7 hypothetical protein compare
HSERO_RS15165 +1.0 4.0 chemotaxis protein compare
HSERO_RS06130 +1.0 1.7 4-hydroxybenzoyl-CoA thioesterase compare
HSERO_RS08535 +1.0 3.8 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS00845 +1.0 1.7 hypothetical protein compare
HSERO_RS10065 +1.0 1.4 hypothetical protein compare
HSERO_RS09835 +1.0 2.3 hypothetical protein compare
HSERO_RS21540 +1.0 2.7 alkyl hydroperoxide reductase subunit C compare
HSERO_RS10210 +1.0 1.9 flagellar L-ring protein FlgH compare
HSERO_RS10125 +0.9 2.3 chemotaxis protein compare
HSERO_RS02545 +0.9 1.1 membrane protein compare
HSERO_RS19885 +0.9 2.6 AsnC family transcriptional regulator compare
HSERO_RS13800 +0.9 2.4 glycosyl transferase family 1 compare
HSERO_RS07890 +0.9 0.9 hypothetical protein compare
HSERO_RS08410 +0.9 1.6 hypothetical protein compare
HSERO_RS04855 +0.9 3.7 ABC transporter permease compare
HSERO_RS19275 +0.9 1.5 acyl-CoA hydrolase compare
HSERO_RS08990 +0.9 2.9 heat shock protein 90 compare
HSERO_RS14030 +0.9 2.0 hypothetical protein compare
HSERO_RS22015 +0.9 2.0 DNA-binding protein compare
HSERO_RS11835 +0.9 1.2 hypothetical protein compare
HSERO_RS01865 +0.9 1.3 sulfonate ABC transporter ATP-binding protein compare
HSERO_RS11155 +0.9 4.4 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS23375 +0.9 1.9 hypothetical protein compare
HSERO_RS18975 +0.9 1.8 hypothetical protein compare
HSERO_RS22070 +0.9 3.4 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase compare
HSERO_RS14000 +0.9 1.6 hypothetical protein compare
HSERO_RS11695 +0.9 2.0 rhodanese compare
HSERO_RS04875 +0.9 3.3 glycerol kinase compare
HSERO_RS12990 +0.8 2.0 aankyrin compare
HSERO_RS04715 +0.8 2.5 hypothetical protein compare
HSERO_RS02365 +0.8 2.9 hypothetical protein compare
HSERO_RS14970 +0.8 4.0 flagellar motor protein MotB compare
HSERO_RS00835 +0.8 1.8 molybdopterin biosynthesis protein MoeB compare
HSERO_RS06420 +0.8 1.3 hypothetical protein compare
HSERO_RS05325 +0.8 1.3 ribose ABC transporter permease compare
HSERO_RS13440 +0.8 1.7 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase compare
HSERO_RS13035 +0.8 2.3 hypothetical protein compare
HSERO_RS02735 +0.8 0.9 hypothetical protein compare
HSERO_RS03510 +0.8 2.8 proline aminopeptidase P II compare
HSERO_RS23445 +0.8 2.9 2-hydroxychromene-2-carboxylate isomerase compare
HSERO_RS20265 +0.8 1.2 hypothetical protein compare
HSERO_RS00790 +0.8 3.2 hypothetical protein compare
HSERO_RS22525 +0.8 1.7 glyoxalase compare
HSERO_RS14375 +0.8 1.6 IscN protein compare
HSERO_RS16490 +0.8 4.9 FimV compare
HSERO_RS18230 +0.8 1.5 pilus assembly protein compare
HSERO_RS10840 +0.8 4.4 cyanophycin synthetase compare
HSERO_RS21165 +0.8 2.6 GntR family transcriptional regulator compare
HSERO_RS12300 +0.8 1.6 hypothetical protein compare
HSERO_RS11655 +0.8 2.0 hemerythrin compare
HSERO_RS10665 +0.8 2.5 coproporphyrinogen III oxidase compare
HSERO_RS10835 +0.8 2.5 peptide deformylase compare
HSERO_RS01605 +0.8 3.2 amino acid dehydrogenase compare
HSERO_RS01050 +0.8 1.9 baseplate protein compare
HSERO_RS15495 +0.7 1.8 ABC transporter permease compare
HSERO_RS23455 +0.7 0.9 methylcrotonoyl-CoA carboxylase compare
HSERO_RS20630 +0.7 1.2 phenylacetic acid degradation protein compare
HSERO_RS21735 +0.7 1.9 hypothetical protein compare
HSERO_RS08775 +0.7 2.5 membrane protein compare
HSERO_RS03435 +0.7 1.5 bacterioferritin compare
HSERO_RS11995 +0.7 1.1 universal stress protein compare
HSERO_RS02800 +0.7 1.1 hypothetical protein compare
HSERO_RS03635 +0.7 1.8 D-mannose ABC transporter, substrate-binding component (from data) compare
HSERO_RS16045 +0.7 1.0 cytochrome oxidase compare
HSERO_RS04230 +0.7 1.6 LuxR family transcriptional regulator compare
HSERO_RS01570 +0.7 3.0 esterase compare
HSERO_RS21070 +0.7 4.0 hypothetical protein compare
HSERO_RS01835 +0.7 1.3 hypothetical protein compare
HSERO_RS13470 +0.7 2.1 C4-dicarboxylate ABC transporter compare
HSERO_RS18875 +0.7 0.8 ATPase compare
HSERO_RS17530 +0.7 1.7 RpiR family transcriptional regulator compare
HSERO_RS05630 +0.7 0.9 AsnC family transcriptional regulator compare
HSERO_RS13450 +0.7 2.0 malonate decarboxylase subunit gamma compare
HSERO_RS22235 +0.7 2.2 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) (from data) compare
HSERO_RS02205 +0.7 1.3 phosphatase compare
HSERO_RS22350 +0.7 1.1 urea carboxylase compare
HSERO_RS06170 +0.7 1.7 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS12595 +0.7 2.0 AraC family transcriptional regulator compare
HSERO_RS13630 +0.7 2.5 aldo-keto reductase compare
HSERO_RS17005 +0.7 2.6 ABC transporter for D-sorbitol/xylitol, permease component 1 (from data) compare
HSERO_RS02430 +0.7 1.5 sulfurtransferase compare
HSERO_RS02770 +0.7 1.7 hypothetical protein compare
HSERO_RS17840 +0.7 3.3 quercetin 2,3-dioxygenase compare
HSERO_RS13635 +0.7 2.1 membrane protein compare
HSERO_RS10405 +0.7 1.1 phosphate starvation protein PhoH compare
HSERO_RS22970 +0.7 3.1 membrane protein compare
HSERO_RS14325 +0.7 2.3 hypothetical protein compare
HSERO_RS01985 +0.7 2.6 energy transducer TonB compare
HSERO_RS02790 +0.7 1.6 hypothetical protein compare
HSERO_RS22285 +0.7 1.2 GntR family transcriptional regulator compare
HSERO_RS19070 +0.7 2.0 acetyl-CoA acetyltransferase compare
HSERO_RS12965 +0.7 1.4 phytoene synthase compare
HSERO_RS01290 +0.7 2.6 hypothetical protein compare
HSERO_RS14770 +0.7 1.5 GTP-binding protein HflX compare
HSERO_RS20200 +0.7 1.5 type VI secretion system protein ImpK compare
HSERO_RS12695 +0.7 3.0 type 2 phosphatidic acid phosphatase compare
HSERO_RS02445 +0.7 1.5 proteinase inhibitor compare
HSERO_RS16835 +0.6 2.2 phosphatidylglycerophosphatase compare
HSERO_RS03260 +0.6 1.4 histidine kinase compare
HSERO_RS17820 +0.6 1.6 Lipid A core--O-antigen ligase compare
HSERO_RS09250 +0.6 1.7 hypothetical protein compare
HSERO_RS13725 +0.6 2.0 hypothetical protein compare
HSERO_RS19580 +0.6 1.9 SPFH domain-containing protein compare
HSERO_RS06010 +0.6 1.4 transporter compare
HSERO_RS08425 +0.6 2.3 hypothetical protein compare
HSERO_RS08170 +0.6 2.6 S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB compare
HSERO_RS16775 +0.6 2.2 hydratase compare
HSERO_RS08030 +0.6 2.2 von Willebrand factor A compare
HSERO_RS01020 +0.6 2.1 hypothetical protein compare
HSERO_RS09735 +0.6 2.4 hypothetical protein compare
HSERO_RS03015 +0.6 1.3 hypothetical protein compare
HSERO_RS23205 +0.6 1.4 3-beta hydroxysteroid dehydrogenase compare
HSERO_RS17220 +0.6 1.7 membrane protein compare
HSERO_RS17780 +0.6 1.6 50S rRNA methyltransferase compare
HSERO_RS04975 +0.6 1.7 methionine ABC transporter permease compare
HSERO_RS03465 +0.6 0.6 hemin transporter compare
HSERO_RS01920 +0.6 4.0 50S ribosomal protein L11 methyltransferase compare
HSERO_RS03965 +0.6 1.4 hypothetical protein compare
HSERO_RS16370 +0.6 0.8 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS13415 +0.6 1.3 VdlD compare
HSERO_RS23625 +0.6 1.7 urease accessory protein UreE compare
HSERO_RS01090 +0.6 1.7 hypothetical protein compare
HSERO_RS02235 +0.6 1.9 membrane protein compare
HSERO_RS02005 +0.6 1.3 membrane protein compare
HSERO_RS04845 +0.6 1.9 ABC transporter compare
HSERO_RS04945 +0.6 1.3 murein transglycosylase compare
HSERO_RS08930 +0.6 2.5 alpha/beta hydrolase compare
HSERO_RS00435 +0.6 3.0 glutathione synthetase compare
HSERO_RS13895 +0.6 3.1 diguanylate cyclase compare
HSERO_RS11225 +0.6 2.5 branched-chain amino acid ABC transporter permease compare
HSERO_RS09005 +0.6 2.6 type I secretion protein HlyD compare
HSERO_RS21200 +0.6 2.1 glycosyl transferase family 1 compare
HSERO_RS21335 +0.6 1.9 hypothetical protein compare
HSERO_RS20540 +0.6 2.5 LamB/YcsF family protein compare
HSERO_RS11820 +0.6 0.9 hypothetical protein compare
HSERO_RS23270 +0.6 1.3 ABC transporter compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Sodium D,L-Lactate in Herbaspirillum seropedicae SmR1

For carbon source Sodium D,L-Lactate across organisms