Experiment set1IT042 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.8 -5.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS30655 -6.5 -4.5 LysR family transcriptional regulator compare
RR42_RS14365 -6.4 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -6.2 -4.3 anthranilate phosphoribosyltransferase compare
RR42_RS16255 -6.0 -5.8 sulfate adenylyltransferase compare
RR42_RS14390 -5.9 -4.0 3-isopropylmalate dehydratase compare
RR42_RS19005 -5.3 -5.1 3-dehydroquinate synthase compare
RR42_RS16250 -5.1 -6.1 sulfate adenylyltransferase compare
RR42_RS01385 -5.0 -4.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS06485 -5.0 -7.7 chorismate synthase compare
RR42_RS05860 -4.9 -4.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS18300 -4.8 -6.5 anthranilate synthase subunit II compare
RR42_RS01160 -4.8 -10.7 homoserine O-acetyltransferase compare
RR42_RS18295 -4.6 -11.2 anthranilate synthase component I compare
RR42_RS14400 -4.5 -4.3 isopropylmalate isomerase compare
RR42_RS05990 -4.4 -7.4 aromatic amino acid aminotransferase compare
RR42_RS33255 -4.3 -4.2 protein-tyrosine phosphatase compare
RR42_RS30660 -4.3 -9.4 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS04475 -4.3 -9.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS19010 -4.3 -7.6 shikimate kinase compare
RR42_RS16245 -4.3 -6.5 uroporphyrin-III methyltransferase compare
RR42_RS14385 -4.2 -6.9 3-isopropylmalate dehydrogenase compare
RR42_RS16280 -4.1 -7.6 transcriptional regulator compare
RR42_RS33260 -4.1 -6.3 multidrug MFS transporter compare
RR42_RS17645 -4.1 -5.7 shikimate dehydrogenase compare
RR42_RS16270 -4.0 -9.1 sulfite reductase compare
RR42_RS01845 -3.9 -2.6 glycerol-3-phosphate dehydrogenase compare
RR42_RS21220 -3.8 -2.6 iron transporter FeoB compare
RR42_RS33240 -3.6 -15.9 GDP-L-fucose synthase compare
RR42_RS14320 -3.5 -5.1 O-succinylhomoserine sulfhydrylase compare
RR42_RS18855 -3.4 -4.0 preprotein translocase compare
RR42_RS20205 -3.4 -3.9 chromosome partitioning protein compare
RR42_RS17355 -3.3 -1.6 hypothetical protein compare
RR42_RS33250 -3.3 -7.7 tyrosine protein kinase compare
RR42_RS14360 -3.2 -2.1 tryptophan synthase subunit alpha compare
RR42_RS18990 -3.1 -18.7 glutamate synthase compare
RR42_RS16275 -3.1 -4.6 membrane protein compare
RR42_RS33235 -3.0 -10.6 GDP-mannose 4,6-dehydratase compare
RR42_RS04460 -3.0 -5.9 chorismate mutase compare
RR42_RS15890 -3.0 -8.9 heme biosynthesis protein HemY compare
RR42_RS06630 -3.0 -1.7 integration host factor subunit alpha compare
RR42_RS16260 -2.9 -1.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS33355 -2.9 -6.1 membrane protein compare
RR42_RS01290 -2.9 -6.4 thiamine biosynthesis protein ThiC compare
RR42_RS16240 -2.9 -1.9 cobalamin biosynthesis protein CbiX compare
RR42_RS02085 -2.7 -6.9 RNA polymerase subunit sigma-54 compare
RR42_RS33245 -2.6 -8.2 mannose-1-phosphate guanyltransferase compare
RR42_RS08590 -2.6 -2.1 baseplate assembly protein compare
RR42_RS07365 -2.6 -4.2 pyruvate dehydrogenase compare
RR42_RS03095 -2.6 -2.4 succinyl-CoA synthetase subunit beta compare
RR42_RS04535 -2.5 -3.8 cysteine synthase compare
RR42_RS21665 -2.5 -9.1 cobalt transporter compare
RR42_RS15895 -2.5 -8.0 uroporphyrinogen III methyltransferase compare
RR42_RS19685 -2.5 -3.3 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS12040 -2.5 -10.6 MFS transporter compare
RR42_RS04470 -2.4 -6.0 prephenate dehydrogenase compare
RR42_RS24930 -2.4 -1.6 AraC family transcriptional regulator compare
RR42_RS26935 -2.4 -5.4 farnesyl-diphosphate farnesyltransferase compare
RR42_RS11770 -2.4 -2.2 cyclase compare
RR42_RS33210 -2.4 -6.2 teichoic acid biosynthesis protein compare
RR42_RS30640 -2.3 -6.7 DNA mismatch repair protein MutT compare
RR42_RS03080 -2.2 -3.9 recombinase RecA compare
RR42_RS18985 -2.2 -5.8 glutamate synthase compare
RR42_RS32975 -2.0 -2.8 LysR family transcriptional regulator compare
RR42_RS02705 -2.0 -2.5 Holliday junction DNA helicase RuvA compare
RR42_RS13910 -1.9 -7.8 glutamate racemase compare
RR42_RS33575 -1.8 -2.6 hypothetical protein compare
RR42_RS00380 -1.8 -8.2 GntR family transcriptional regulator compare
RR42_RS06545 -1.8 -2.3 thioesterase compare
RR42_RS07565 -1.7 -7.9 transcription accessory protein compare
RR42_RS18850 -1.7 -1.5 preprotein translocase subunit TatC compare
RR42_RS00715 -1.6 -2.7 ferritin compare
RR42_RS15415 -1.6 -3.1 membrane protein compare
RR42_RS01775 -1.6 -5.6 glutamate--cysteine ligase compare
RR42_RS01920 -1.6 -2.9 protoheme IX farnesyltransferase compare
RR42_RS17105 -1.5 -7.4 Clp protease ClpX compare
RR42_RS07555 -1.5 -2.0 potassium transporter Kup compare
RR42_RS23205 -1.5 -1.3 hypothetical protein compare
RR42_RS37400 -1.4 -1.3 6-phosphogluconolactonase compare
RR42_RS17050 -1.4 -5.0 phosphoribosylglycinamide formyltransferase compare
RR42_RS18385 -1.4 -2.8 hypothetical protein compare
RR42_RS15410 -1.4 -4.5 membrane protein compare
RR42_RS14790 -1.4 -6.7 cobalamin biosynthesis protein CobD compare
RR42_RS11795 -1.3 -2.3 PEP synthetase regulatory protein compare
RR42_RS04895 -1.3 -8.0 serine/threonine protein phosphatase compare
RR42_RS24605 -1.3 -7.2 TetR family transcriptional regulator compare
RR42_RS02810 -1.3 -1.7 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS15525 -1.3 -1.4 hypothetical protein compare
RR42_RS35875 -1.3 -6.6 UDP-galactose-4-epimerase compare
RR42_RS17720 -1.3 -1.9 sugar kinase compare
RR42_RS18670 -1.2 -3.2 metal-dependent hydrolase compare
RR42_RS32600 -1.2 -3.5 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS18995 -1.2 -6.1 transposase compare
RR42_RS15035 -1.2 -4.3 ZIP zinc transporter compare
RR42_RS05290 -1.2 -2.4 ankyrin compare
RR42_RS05955 -1.2 -1.1 hypothetical protein compare
RR42_RS12925 -1.2 -2.2 ATPase compare
RR42_RS01695 -1.2 -5.7 C4-dicarboxylate transporter compare
RR42_RS32595 -1.2 -3.9 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS12050 -1.1 -4.7 DNA polymerase compare
RR42_RS17060 -1.1 -8.0 histidine kinase compare
RR42_RS17390 -1.1 -4.3 ATP-dependent DNA helicase RecG compare
RR42_RS00830 -1.1 -5.2 cell division protein FtsN compare
RR42_RS01420 -1.1 -1.4 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS13025 -1.1 -3.5 hypothetical protein compare
RR42_RS03345 -1.1 -3.8 recombinase XerD compare
RR42_RS27320 -1.1 -2.0 ferredoxin compare
RR42_RS34215 -1.1 -1.2 ferredoxin compare
RR42_RS19440 -1.1 -2.8 DNA repair protein compare
RR42_RS29280 -1.1 -1.2 hypothetical protein compare
RR42_RS13905 -1.1 -3.4 fumarate hydratase compare
RR42_RS37240 -1.1 -1.3 hypothetical protein compare
RR42_RS05430 -1.1 -3.0 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS19555 -1.1 -1.3 hypothetical protein compare
RR42_RS34815 -1.1 -2.7 diguanylate cyclase compare
RR42_RS10920 -1.1 -1.4 hypothetical protein compare
RR42_RS07620 -1.0 -2.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS06095 -1.0 -1.9 hypothetical protein compare
RR42_RS27120 -1.0 -1.4 amino acid ABC transporter permease compare
RR42_RS20195 -1.0 -0.8 ATPase F0F1 compare
RR42_RS05165 -1.0 -1.8 GntR family transcriptional regulator compare
RR42_RS04735 -1.0 -1.1 hypothetical protein compare
RR42_RS14080 -1.0 -6.5 RNA polymerase sigma factor RpoE compare
RR42_RS19885 -1.0 -0.9 aminoglycoside transporter compare
RR42_RS04320 -1.0 -3.4 cell division protein FtsK compare
RR42_RS13365 -1.0 -1.7 peptidase P60 compare
RR42_RS26350 -1.0 -1.5 bleomycin resistance protein compare
RR42_RS01380 -1.0 -0.9 membrane protein compare
RR42_RS02785 -1.0 -2.2 dimethyladenosine transferase compare
RR42_RS05920 -1.0 -2.5 HrcA family transcriptional regulator compare
RR42_RS26540 -1.0 -0.9 3-phosphoglycerate dehydrogenase compare
RR42_RS18315 -1.0 -3.2 toxin compare
RR42_RS26590 -1.0 -1.4 hypothetical protein compare
RR42_RS31530 -1.0 -2.3 histidine kinase compare
RR42_RS04770 -1.0 -1.2 methylglyoxal synthase compare
RR42_RS01820 -0.9 -3.3 peptidase S41 compare
RR42_RS31290 -0.9 -1.7 XRE family transcriptional regulator compare
RR42_RS03085 -0.9 -1.0 RecX family transcriptional regulator compare
RR42_RS21820 -0.9 -1.2 GntR family transcriptional regulator compare
RR42_RS13935 -0.9 -2.2 hemin transporter compare
RR42_RS26770 -0.9 -2.2 extradiol dioxygenase compare
RR42_RS15740 -0.9 -1.4 hypothetical protein compare
RR42_RS18140 -0.9 -1.2 MarR family transcriptional regulator compare
RR42_RS04060 -0.9 -2.1 hypothetical protein compare
RR42_RS33215 -0.9 -5.5 transferase compare
RR42_RS27215 -0.9 -2.0 LysR family transcriptional regulator compare
RR42_RS01830 -0.9 -3.3 sulfurtransferase compare
RR42_RS13625 -0.9 -2.3 4-hydroxybenzoyl-CoA reductase compare
RR42_RS19750 -0.9 -1.2 MBL fold metallo-hydrolase compare
RR42_RS27550 -0.9 -0.8 hypothetical protein compare
RR42_RS12615 -0.9 -1.0 LexA family transcriptional regulator compare
RR42_RS37115 -0.9 -1.5 hypothetical protein compare
RR42_RS32555 -0.9 -1.8 nitrilotriacetate monooxygenase compare
RR42_RS31900 -0.9 -1.6 short-chain dehydrogenase compare
RR42_RS20300 -0.9 -2.5 MerR family transcriptional regulator compare
RR42_RS00115 -0.9 -1.1 hypothetical protein compare
RR42_RS13190 -0.9 -3.3 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS17055 -0.9 -4.7 LuxR family transcriptional regulator compare
RR42_RS10465 -0.9 -1.2 hypothetical protein compare
RR42_RS03530 -0.9 -1.0 hypothetical protein compare
RR42_RS25785 -0.9 -1.8 TetR family transcriptional regulator compare
RR42_RS01780 -0.9 -4.5 glutathione synthetase compare
RR42_RS06020 -0.8 -0.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS01255 -0.8 -4.2 lauroyl acyltransferase compare
RR42_RS10415 -0.8 -1.0 hypothetical protein compare
RR42_RS15090 -0.8 -2.4 DNA helicase compare
RR42_RS18825 -0.8 -2.3 ubiquinol-cytochrome C reductase compare
RR42_RS13305 -0.8 -1.2 hypothetical protein compare
RR42_RS16175 -0.8 -1.2 enoyl-CoA hydratase compare
RR42_RS02775 -0.8 -1.7 molecular chaperone SurA compare
RR42_RS37320 -0.8 -1.9 hypothetical protein compare
RR42_RS14055 -0.8 -1.8 elongation factor 4 compare
RR42_RS06355 -0.8 -3.1 Fe-S cluster assembly protein HesB compare
RR42_RS08085 -0.8 -1.8 hypothetical protein compare
RR42_RS18815 -0.8 -3.6 cytochrome C compare
RR42_RS21150 -0.8 -1.6 hypothetical protein compare
RR42_RS08210 -0.8 -0.9 hypothetical protein compare
RR42_RS18270 -0.8 -2.5 murein transglycosylase compare
RR42_RS33145 -0.8 -1.3 hypothetical protein compare
RR42_RS31285 -0.8 -1.2 XRE family transcriptional regulator compare
RR42_RS28290 -0.8 -2.5 DNA-binding protein compare
RR42_RS23575 -0.8 -2.9 flagellar hook-basal body protein FliE compare
RR42_RS15775 -0.8 -4.0 N-acetylneuraminate synthase compare
RR42_RS33195 -0.8 -5.1 UDP-sugar lipid carrier transferase compare
RR42_RS08365 -0.8 -4.2 hypothetical protein compare
RR42_RS12550 -0.8 -2.0 hypothetical protein compare
RR42_RS08980 -0.8 -2.4 hypothetical protein compare
RR42_RS07890 -0.8 -1.1 hypothetical protein compare
RR42_RS25015 -0.8 -1.2 gluconolactonase compare
RR42_RS15710 -0.8 -3.1 LPS biosynthesis protein compare
RR42_RS27520 -0.8 -1.9 hypothetical protein compare
RR42_RS19695 -0.8 -1.1 cytochrome C protein compare
RR42_RS19895 -0.8 -1.3 elongation factor GreAB compare
RR42_RS14355 -0.8 -2.9 DNA methylase N-4 compare
RR42_RS02270 -0.8 -1.0 hypothetical protein compare
RR42_RS13465 -0.8 -1.9 phosphate transporter permease subunit PstC compare
RR42_RS15470 -0.8 -1.2 biopolymer transporter ExbD compare
RR42_RS02045 -0.8 -5.0 GTPase compare
RR42_RS08295 -0.7 -1.8 hypothetical protein compare
RR42_RS20440 -0.7 -1.1 histidine kinase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Malic acid disodium salt monohydrate across organisms