Experiment set1IT041 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Paraquat dichloride 0.016 mg/mL

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2386 -3.4 -4.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_2133 -2.8 -5.7 Major facilitator family transporter conserved
Pf1N1B4_2695 -2.7 -2.6 Rare lipoprotein A precursor compare
Pf1N1B4_1180 -2.7 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_2283 -2.7 -1.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_1463 -2.7 -7.2 hypothetical protein compare
Pf1N1B4_3985 -2.6 -3.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_337 -2.6 -4.0 O-antigen export system permease protein RfbD compare
Pf1N1B4_2418 -2.5 -4.1 HTH-type transcriptional regulator BetI compare
Pf1N1B4_1461 -2.2 -3.3 Protein fixF compare
Pf1N1B4_1296 -2.2 -9.2 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) conserved
Pf1N1B4_3153 -2.1 -2.0 hypothetical protein compare
Pf1N1B4_336 -2.1 -11.1 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_1460 -2.0 -8.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf1N1B4_3001 -2.0 -3.6 hypothetical protein compare
Pf1N1B4_1554 -2.0 -5.8 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_58 -1.9 -4.7 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4422 -1.9 -1.8 ABC transporter amino acid-binding protein compare
Pf1N1B4_835 -1.9 -2.7 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_3927 -1.9 -1.9 hypothetical protein compare
Pf1N1B4_2764 -1.8 -3.8 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) compare
Pf1N1B4_4335 -1.8 -2.3 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_4740 -1.8 -2.0 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3119 -1.7 -2.2 Holin compare
Pf1N1B4_4423 -1.7 -2.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_3833 -1.7 -5.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_627 -1.7 -2.3 hypothetical protein compare
Pf1N1B4_1115 -1.6 -7.1 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_4477 -1.6 -2.4 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_5659 -1.6 -4.4 NfuA Fe-S protein maturation compare
Pf1N1B4_2106 -1.6 -2.4 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_539 -1.5 -2.2 Transcriptional regulators compare
Pf1N1B4_3976 -1.5 -4.9 Transmembrane regulator protein PrtR compare
Pf1N1B4_2026 -1.5 -2.3 Transcriptional regulator compare
Pf1N1B4_1781 -1.5 -1.9 hypothetical protein compare
Pf1N1B4_1661 -1.5 -3.6 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_1561 -1.5 -2.4 FIG00954300: hypothetical protein compare
Pf1N1B4_2218 -1.5 -5.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf1N1B4_5187 -1.5 -1.7 5S RNA compare
Pf1N1B4_4866 -1.5 -2.3 hypothetical protein compare
Pf1N1B4_2105 -1.5 -2.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_407 -1.4 -1.9 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_69 -1.4 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2416 -1.4 -4.8 Choline dehydrogenase (EC 1.1.99.1) compare
Pf1N1B4_2850 -1.4 -5.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_795 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_1837 -1.4 -1.6 Osmotically inducible protein C compare
Pf1N1B4_1307 -1.4 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2550 -1.4 -3.6 Lipoate-protein ligase A compare
Pf1N1B4_5330 -1.4 -1.8 hypothetical protein compare
Pf1N1B4_3006 -1.4 -4.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_2783 -1.4 -2.0 Transcription elongation factor GreB-related protein compare
Pf1N1B4_3581 -1.4 -3.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3350 -1.4 -1.9 FIG00954807: hypothetical protein compare
Pf1N1B4_2493 -1.4 -2.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_3656 -1.3 -2.1 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3591 -1.3 -5.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_3362 -1.3 -3.0 Multidrug resistance protein B compare
Pf1N1B4_5838 -1.3 -1.6 FIG00956589: hypothetical protein compare
Pf1N1B4_4041 -1.3 -2.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4725 -1.3 -2.6 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_3390 -1.3 -1.9 RNA polymerase sigma factor RpoE compare
Pf1N1B4_1975 -1.3 -2.1 Transcriptional regulator, AsnC family compare
Pf1N1B4_4437 -1.3 -2.3 hypothetical protein compare
Pf1N1B4_617 -1.3 -1.2 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_5668 -1.3 -2.4 Peptidase, U7 family compare
Pf1N1B4_1866 -1.3 -2.6 Methionine ABC transporter ATP-binding protein compare
Pf1N1B4_4939 -1.3 -2.8 sodium/hydrogen exchanger family protein compare
Pf1N1B4_731 -1.2 -1.6 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_2234 -1.2 -3.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_5779 -1.2 -1.6 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_2417 -1.2 -1.8 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_769 -1.2 -4.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4028 -1.2 -2.6 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_133 -1.2 -2.3 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_4106 -1.2 -2.2 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_3012 -1.2 -2.7 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_2483 -1.2 -2.5 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Pf1N1B4_3590 -1.2 -3.9 hypothetical protein compare
Pf1N1B4_3782 -1.2 -1.4 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_4961 -1.1 -2.5 FIG00441227: hypothetical protein compare
Pf1N1B4_1527 -1.1 -2.0 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_5278 -1.1 -1.2 hypothetical protein compare
Pf1N1B4_2145 -1.1 -1.3 Translation initiation inhibitor compare
Pf1N1B4_868 -1.1 -3.9 tRNA:Cm32/Um32 methyltransferase compare
Pf1N1B4_5359 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_327 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_4835 -1.1 -1.8 Carbon starvation protein A compare
Pf1N1B4_3134 -1.1 -1.7 probable tail fiber assembly-like protein compare
Pf1N1B4_1403 -1.1 -4.3 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4869 -1.1 -2.7 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
Pf1N1B4_2937 -1.1 -2.7 FIG00953775: hypothetical protein compare
Pf1N1B4_1116 -1.1 -6.1 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1317 -1.1 -1.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_2924 -1.1 -2.3 FIG00955589: hypothetical protein compare
Pf1N1B4_1 -1.1 -2.1 Colicin V production protein compare
Pf1N1B4_602 -1.1 -2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_5607 -1.1 -2.4 C4-dicarboxylate transport protein compare
Pf1N1B4_5533 -1.1 -2.5 cobS protein, putative compare
Pf1N1B4_1474 -1.1 -3.0 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_4055 -1.1 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_1614 -1.1 -1.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_4627 -1.0 -1.6 FIG00957600: hypothetical protein compare
Pf1N1B4_625 -1.0 -2.9 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_128 -1.0 -1.8 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_1472 -1.0 -1.1 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4201 -1.0 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_1632 -1.0 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_4108 -1.0 -1.5 Hydrolase, alpha/beta fold family compare
Pf1N1B4_5834 -1.0 -1.8 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_1590 -1.0 -3.3 Histidine utilization repressor compare
Pf1N1B4_2549 -1.0 -4.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_5814 -1.0 -1.7 putative membrane protein compare
Pf1N1B4_2668 -1.0 -5.5 DedA protein compare
Pf1N1B4_1466 -1.0 -3.4 hypothetical protein compare
Pf1N1B4_5512 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_5768 -1.0 -2.0 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_141 -1.0 -4.8 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_3767 -1.0 -2.3 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf1N1B4_5354 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_5152 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_2112 -1.0 -6.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3631 -1.0 -2.1 Flagellar motor rotation protein MotA compare
Pf1N1B4_2721 -1.0 -4.9 AMP nucleosidase (EC 3.2.2.4) compare
Pf1N1B4_2054 -0.9 -2.1 FIG00964469: hypothetical protein compare
Pf1N1B4_3005 -0.9 -5.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf1N1B4_458 -0.9 -2.9 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf1N1B4_2507 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_958 -0.9 -1.4 Stringent starvation protein B compare
Pf1N1B4_3273 -0.9 -1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf1N1B4_6031 -0.9 -2.1 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_5059 -0.9 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_2178 -0.9 -1.2 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4585 -0.9 -1.9 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4518 -0.9 -1.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_748 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_1236 -0.9 -3.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1676 -0.9 -2.9 Inner membrane component of tripartite multidrug resistance system compare
Pf1N1B4_5722 -0.9 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_399 -0.9 -1.4 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_3410 -0.9 -2.9 FIG00964654: hypothetical protein compare
Pf1N1B4_1462 -0.9 -5.4 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_4446 -0.9 -1.6 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_198 -0.9 -1.4 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_5096 -0.9 -2.9 Nitrate ABC transporter, nitrate-binding protein compare
Pf1N1B4_4040 -0.9 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_363 -0.9 -2.7 Thioredoxin compare
Pf1N1B4_365 -0.9 -2.9 Cell division protein BolA compare
Pf1N1B4_4297 -0.9 -1.5 FIG00966599: hypothetical protein compare
Pf1N1B4_1414 -0.9 -3.9 DNA mismatch repair protein MutL compare
Pf1N1B4_1586 -0.9 -4.8 Purine-cytosine permease compare
Pf1N1B4_1294 -0.9 -1.2 VgrG protein compare
Pf1N1B4_626 -0.9 -3.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf1N1B4_3636 -0.9 -1.8 FIG00953562: hypothetical protein compare
Pf1N1B4_716 -0.9 -2.2 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_4111 -0.9 -1.7 Panthothenate synthetase compare
Pf1N1B4_1830 -0.9 -3.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3595 -0.9 -1.1 Flagellin protein FlaG compare
Pf1N1B4_3853 -0.9 -1.6 Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4) compare
Pf1N1B4_898 -0.9 -4.0 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf1N1B4_1782 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_582 -0.9 -1.8 FIG00959696: hypothetical protein compare
Pf1N1B4_3011 -0.9 -1.6 Tyrosine recombinase XerD compare
Pf1N1B4_1845 -0.9 -1.9 FIG00954395: hypothetical protein compare
Pf1N1B4_27 -0.9 -2.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_5309 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_3434 -0.9 -3.3 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_3498 -0.9 -1.4 FIG00953240: hypothetical protein compare
Pf1N1B4_3078 -0.9 -1.4 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_72 -0.8 -1.2 Transcriptional regulator, LysR family compare
Pf1N1B4_1092 -0.8 -4.0 TldD protein, part of TldE/TldD proteolytic complex compare
Pf1N1B4_992 -0.8 -2.5 alginate o-acetyltransferase AlgF compare
Pf1N1B4_4374 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_2169 -0.8 -1.5 FIG00953808: hypothetical protein compare
Pf1N1B4_5100 -0.8 -1.7 Transcriptional regulator ahyR/asaR family compare
Pf1N1B4_3278 -0.8 -1.8 putative exported protein compare
Pf1N1B4_2891 -0.8 -1.9 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_4103 -0.8 -1.3 Flagellar synthesis regulator FleN compare
Pf1N1B4_1660 -0.8 -1.9 FIG00953324: hypothetical protein compare
Pf1N1B4_564 -0.8 -1.7 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_5453 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5995 -0.8 -1.4 Transporter, MFS superfamily compare
Pf1N1B4_5224 -0.8 -1.6 tRNA-Arg-CCT compare
Pf1N1B4_2134 -0.8 -3.7 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_139 -0.8 -1.6 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_219 -0.8 -2.1 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_959 -0.8 -5.7 Stringent starvation protein A compare
Pf1N1B4_3433 -0.8 -4.3 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
Pf1N1B4_5663 -0.8 -1.3 Periplasmic sugar-binding domain protein compare
Pf1N1B4_1587 -0.8 -5.1 Urocanate hydratase (EC 4.2.1.49) (from data) compare
Pf1N1B4_723 -0.8 -5.3 two-component system sensor protein compare
Pf1N1B4_4133 -0.8 -2.2 Mobile element protein compare
Pf1N1B4_2869 -0.8 -2.6 lipoprotein, putative compare
Pf1N1B4_3494 -0.8 -1.7 Flavoprotein WrbA compare
Pf1N1B4_2143 -0.8 -4.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1434 -0.8 -3.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3233 -0.8 -2.8 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12) compare
Pf1N1B4_4839 -0.8 -1.3 lipoprotein compare
Pf1N1B4_4787 -0.8 -2.4 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_2987 -0.8 -2.1 NAD-dependent formate dehydrogenase delta subunit compare


Specific Phenotypes

For 14 genes in this experiment

For stress Paraquat dichloride in Pseudomonas fluorescens FW300-N1B4

For stress Paraquat dichloride across organisms