Experiment set1IT041 for Sinorhizobium meliloti 1021

Compare to:

LB with sodium fluoride 100 mM

200 most important genes:

  gene name fitness t score description  
SMc01274 -5.7 -12.1 camphor resistance protein CrcB conserved
SMc00511 -4.9 -6.9 D-ribulose-5-phosphate 3-epimerase compare
SMc02850 -4.1 -6.7 DNA polymerase I compare
SMc00334 -4.1 -2.9 cytidylate kinase compare
SMc02055 -3.6 -2.7 phytoene synthase compare
SMc01007 -3.4 -3.5 hypothetical protein compare
SMc03967 -3.3 -2.1 Holliday junction resolvase compare
SMc03763 -3.0 -4.4 cytosine-specific methyltransferase compare
SMc00427 -2.8 -4.0 peptide chain release factor RF-3 protein compare
SMc00619 -2.7 -3.1 hypothetical protein compare
SMc02510 -2.7 -1.4 ferric uptake regulation protein compare
SMc00010 -2.7 -3.6 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02833 -2.7 -3.4 penicillin-insensitive murein endopeptidase compare
SMc02641 -2.6 -5.7 UDP-glucose 6-dehydrogenase compare
SMc01272 -2.5 -4.9 hypothetical protein compare
SMc02147 -2.5 -8.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc01880 -2.5 -4.8 pantoate--beta-alanine ligase compare
SMc02144 -2.5 -6.2 phosphate ABC transporter permease compare
SMc02141 -2.3 -6.4 phosphate transporter PhoU compare
SMc00247 -2.3 -9.8 phosphatidylcholine synthase compare
SMc01273 -2.3 -6.8 S-formylglutathione hydrolase compare
SMc01881 -2.3 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMa0789 -2.2 -4.3 GntR family transcriptional regulator compare
SMc03978 -2.1 -4.1 transketolase compare
SMc00450 -2.1 -2.9 protoheme IX farnesyltransferase compare
SMc00876 -2.0 -5.7 ATP-binding MRP protein compare
SMc02363 -2.0 -4.1 cytochrome C-type biogenesis transmembrane protein compare
SMc01595 -1.9 -3.8 sensor histidine kinase transmembrane protein compare
SMc02140 -1.9 -2.3 phosphate regulon transcriptional regulatory protein compare
SMc02115 -1.8 -1.3 hypothetical protein compare
SMc02142 -1.8 -4.5 phosphate transporter ATP-binding protein compare
SMc02145 -1.8 -1.5 signal peptide protein compare
SMc04432 -1.8 -3.7 hypothetical protein compare
SMc02753 -1.7 -2.1 PTS system transporter subunit IIA compare
SMc02077 -1.7 -3.5 exodeoxyribonuclease III protein compare
SMc00017 -1.6 -2.3 homoserine kinase compare
SMc00352 -1.6 -2.7 acetyltransferase compare
SMc01099 -1.6 -3.1 tRNA pseudouridine synthase A compare
SMc02058 -1.6 -4.4 YAJC protein compare
SMc03839 -1.5 -1.6 hypothetical protein compare
SM_b21489 -1.4 -4.1 cytochrome O ubiquinol oxidase subunit III compare
SMc00760 -1.4 -5.7 recombinase A compare
SMc03826 -1.4 -3.2 argininosuccinate synthase compare
SMc02755 -1.3 -5.7 S-adenosyl-L-homocysteine hydrolase compare
SMc00067 -1.3 -8.3 outer-membranne lipoprotein compare
SMc01726 -1.3 -4.8 acetylglutamate kinase compare
SMc00602 -1.3 -4.7 excinuclease ABC subunit C compare
SMc00761 -1.3 -7.8 oxidoreductase compare
SMc01569 -1.3 -1.4 carbamoyl phosphate synthase small subunit compare
SMc03878 -1.3 -3.8 acetoacetyl-CoA reductase compare
SMc02713 -1.3 -2.2 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02362 -1.2 -4.1 cytochrome c-type biogenesis protein CcmE compare
SM_b21347 -1.2 -2.2 pectin degradation protein compare
SMc00689 -1.2 -4.1 lipoprotein compare
SMc01441 -1.2 -5.0 membrane bound protease compare
SMc02640 -1.2 -3.6 UDP-glucuronic acid epimerase compare
SMc03850 -1.2 -1.3 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc04169 -1.2 -8.7 transcriptional regulator compare
SMc00073 -1.1 -2.3 hypothetical protein compare
SMc00556 -1.1 -3.8 DNA repair protein RadA compare
SMc04128 -1.1 -5.4 heavy metal transporting ATPase compare
SMc01342 -1.1 -3.9 hypothetical protein compare
SMc00709 -1.1 -3.2 hypothetical protein compare
SMc02143 -1.1 -3.2 phosphate ABC transporter permease compare
SM_b20701 -1.1 -1.1 hypothetical protein compare
SMc02271 -1.0 -4.6 ribitol type dehydrogenase compare
SMc01930 -1.0 -1.3 hypothetical protein compare
SMa1101 -1.0 -0.7 hypothetical protein compare
SMa1240 -1.0 -1.1 NapF ferredoxin component of periplasmic nitrate reductase compare
SMa1924 -1.0 -0.9 hypothetical protein compare
SMc03849 -1.0 -1.1 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02270 -1.0 -8.0 capsular polysaccharide biosynthesis\export transmembrane protein compare
SMc00815 -1.0 -1.6 inosine 5'-monophosphate dehydrogenase compare
SMc02577 -1.0 -6.4 ATP-dependent protease ATP-binding subunit HslU compare
SMc02714 -1.0 -1.4 hypothetical protein compare
SMc02799 -1.0 -1.9 16S rRNA methyltransferase GidB compare
SMc01215 -1.0 -3.4 carbamoyl phosphate synthase large subunit compare
SM_b21488 -0.9 -6.2 cytochrome o ubiquinol oxidase subunit I compare
SMc03774 -0.9 -2.0 hypothetical protein compare
SMc02384 -0.9 -5.7 glycosyltransferase transmembrane protein compare
SMc01024 -0.9 -1.3 preprotein translocase subunit SecG compare
SMc02834 -0.9 -4.0 methylglyoxal synthase compare
SMc02407 -0.9 -4.2 hypothetical protein compare
SMc03863 -0.9 -2.1 50S ribosomal protein L19 compare
SMc00296 -0.9 -5.8 POLY3-hydroxybutyrate polymerase compare
SMc04296 -0.9 -1.3 cell division protein FtsZ compare
SMc01461 -0.9 -3.6 DNA helicase II protein compare
SMc00295 -0.9 -1.1 hypothetical protein compare
SMc01643 -0.9 -4.6 ABC transporter permease compare
SMc01091 -0.9 -1.8 hypothetical protein compare
SM_b20813 -0.9 -6.8 lipid ABC transporter permease/ATP-binding protein compare
SMc03981 -0.9 -2.9 phosphoglycerate kinase compare
SMc00726 -0.9 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc02084 -0.9 -1.1 biopolymer transport transmembrane protein compare
SMc00492 -0.9 -0.9 hypothetical protein compare
SMc03795 -0.9 -1.5 isopropylmalate isomerase small subunit compare
SMc01363 -0.9 -1.5 hypothetical protein compare
SMc02434 -0.9 -1.4 hypothetical protein compare
SMc01315 -0.8 -1.1 hypothetical protein compare
SMc00691 -0.8 -2.0 site-specific tyrosine recombinase XerD compare
SM_b20595 -0.8 -3.7 cell division protein FtsK compare
SMc00053 -0.8 -0.8 monovalent cation/H+ antiporter subunit C compare
SMc02867 -0.8 -2.6 multidrug-efflux system transmembrane protein compare
SMc02558 -0.8 -3.6 hypothetical protein compare
SMa0955 -0.8 -1.9 GntR family transcriptional regulator compare
SMa0947 -0.8 -1.9 hypothetical protein compare
SMc03941 -0.8 -2.6 hypothetical protein compare
SM_b20993 -0.8 -3.6 FMNH2-dependent monooxygenase compare
SMc01645 -0.8 -5.0 ABC transporter ATP-binding protein compare
SMa1323 -0.8 -2.0 Transcription regulator compare
SMc02309 -0.8 -4.3 arsenate reductase compare
SMc02787 -0.8 -1.7 hypothetical protein compare
SM_b20953 -0.8 -0.9 hypothetical protein compare
SMc00877 -0.8 -5.2 transcriptional regulator compare
SM_b20834 -0.8 -5.5 surface saccharide synthesis protein compare
SMc01206 -0.8 -1.1 queuine tRNA-ribosyltransferase compare
SMc04168 -0.8 -1.6 hypothetical protein compare
SM_b21009 -0.8 -5.5 Glycerol kinase (EC 2.7.1.30) (from data) compare
SMc02909 -0.8 -1.5 transglycosylase transmembrane protein compare
SMc03183 -0.8 -4.8 monovalent cation/H+ antiporter subunit F compare
SMc01235 -0.8 -5.2 excinuclease ABC subunit A compare
SM_b20823 -0.8 -3.4 cell surface saccharide synthesis protein compare
SMc03242 -0.8 -2.0 GTP-binding protein compare
SMc03179 -0.8 -5.8 monovalent cation/H+ antiporter subunit A compare
SMc00013 -0.8 -0.8 cytochrome C oxidase subunit III transmembrane protein compare
SMc01147 -0.8 -2.6 coproporphyrinogen III oxidase compare
SMc03180 -0.8 -4.2 monovalent cation/H+ antiporter subunit C compare
SMc01220 -0.7 -2.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SM_b20333 -0.7 -6.1 transporter protein compare
SMc00963 -0.7 -2.9 hypothetical protein compare
SMc01801 -0.7 -2.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02269 -0.7 -4.7 capsular polysaccharide biosynthesis/export protein compare
SMa1118 -0.7 -1.2 HspC2 heat shock protein compare
SM_b20547 -0.7 -2.3 hypothetical protein compare
SMc02543 -0.7 -3.7 hypothetical protein compare
SMc00451 -0.7 -3.8 processing protease compare
SM_b20401 -0.7 -1.6 hypothetical protein compare
SM_b20992 -0.7 -2.5 hypothetical protein compare
SM_b21487 -0.7 -3.7 cytochrome o ubiquinol oxidase subunit II compare
SMc04121 -0.7 -1.9 uracil phosphoribosyltransferase compare
SMc00191 -0.7 -1.3 hypothetical protein compare
SMc01501 -0.7 -1.7 mannitol 2-dehydrogenase compare
SMc02247 -0.7 -1.0 signal peptide protein compare
SMc01642 -0.7 -4.5 periplasmic binding protein compare
SMa5018 -0.7 -1.8 hypothetical protein compare
SMc02425 -0.7 -1.6 transcriptional regulator compare
SMc02724 -0.7 -2.2 hypothetical protein compare
SM_b20345 -0.7 -4.7 efflux protein compare
SMc02684 -0.7 -4.5 hydrolase/peptidase compare
SMc00495 -0.7 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02575 -0.7 -3.7 ATP-dependent protease peptidase subunit compare
SMc02155 -0.7 -5.0 hypothetical protein compare
SMc01427 -0.7 -1.1 hypothetical protein compare
SMa0265 -0.7 -1.4 dehydrogenase compare
SMc03229 -0.7 -1.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMa1174 -0.7 -1.2 hypothetical protein compare
SM_b20258 -0.7 -2.0 transcriptional regulator compare
SMc02707 -0.6 -1.1 hypothetical protein compare
SMc04001 -0.6 -0.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SM_b20290 -0.6 -2.9 transcriptional regulator compare
SMc02866 -0.6 -2.8 transcriptional regulator compare
SMa1779 -0.6 -1.7 hypothetical protein compare
SMc02856 -0.6 -3.8 penicillin-binding protein compare
SMc01260 -0.6 -2.6 transcriptional regulator compare
SMc00941 -0.6 -0.9 hypothetical protein compare
SMc01580 -0.6 -2.3 hypothetical protein compare
SMc02572 -0.6 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
SMc02227 -0.6 -3.3 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMa0093 -0.6 -1.6 Branched-chain amino acid aminotransferase compare
SM_b20692 -0.6 -2.4 5-keto-D-gluconate 5-reductase compare
SMc02057 -0.6 -3.3 preprotein translocase subunit SecD/SecF compare
SMc00514 -0.6 -1.7 monooxygenase compare
SMa0223 -0.6 -2.9 TetR family transcriptional regulator compare
SMc00038 -0.6 -2.0 hypothetical protein compare
SMc00085 -0.6 -2.3 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMa2034 -0.6 -1.3 hypothetical protein compare
SMc03949 -0.6 -2.9 nitrogen regulatory protein compare
SMc04327 -0.6 -0.8 hypothetical protein compare
SMc03182 -0.6 -1.8 pH adaptation potassium efflux system E transmembrane protein compare
SMc02306 -0.6 -1.0 hypothetical protein compare
SMc02435 -0.6 -1.2 methyltransferase compare
SMa2215 -0.6 -1.4 GntR family transcriptional regulator compare
SMc04042 -0.6 -3.2 monophosphatase compare
SMc02573 -0.6 -0.9 hypothetical protein compare
SMc00762 -0.6 -4.1 glutamine synthetase compare
SMc00302 -0.6 -1.9 hypothetical protein compare
SMc01516 -0.6 -2.1 hypothetical protein compare
SMc02695 -0.6 -2.6 GTP-dependent nucleic acid-binding protein EngD compare
SMc01419 -0.6 -1.2 RNA polymerase sigma factor protein compare
SMc01119 -0.6 -1.3 hypothetical protein compare
SMc00589 -0.6 -2.1 hypothetical protein compare
SMc01110 -0.6 -2.4 DNA-binding protein compare
SMa0121 -0.6 -1.4 hypothetical protein compare
SMc03181 -0.6 -3.0 monovalent cation/H+ antiporter subunit D compare
SMa2020 -0.6 -2.9 Transcriptional regulator compare
SM_b21580 -0.6 -1.1 hypothetical protein compare
SMa1576 -0.6 -2.0 CpaB2 pilus assembly protein compare
SMc01644 -0.6 -1.7 ABC transporter permease compare
SMc01440 -0.6 -2.3 hydrolase serine protease transmembrane protein compare
SM_b20346 -0.6 -3.7 efflux protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress sodium fluoride in Sinorhizobium meliloti 1021

For stress sodium fluoride across organisms