Experiment set1IT041 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -6.2 -4.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS07660 -6.1 -6.0 carbonic anhydrase compare
MMJJ_RS00040 -5.8 -9.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS08005 -5.8 -13.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00935 -5.7 -15.1 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS07670 -5.7 -20.6 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00060 -5.6 -19.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS07665 -5.5 -26.7 formate dehydrogenase subunit alpha compare
MMJJ_RS00050 -5.5 -9.2 AAA family ATPase compare
MMJJ_RS00045 -5.4 -13.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS08855 -5.4 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00075 -5.3 -10.2 AAA family ATPase compare
MMJJ_RS07975 -5.3 -11.7 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS06915 -5.1 -14.0 helix-turn-helix domain-containing protein compare
MMJJ_RS05155 -5.1 -3.5 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06050 -5.0 -11.6 molybdopterin molybdotransferase MoeA compare
MMJJ_RS00055 -5.0 -10.1 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS07655 -4.9 -14.6 hypothetical protein compare
MMJJ_RS00065 -4.9 -12.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00035 -4.9 -17.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS03920 -4.8 -15.7 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS06860 -4.6 -2.9 hypothetical protein compare
MMJJ_RS03065 -4.6 -15.5 CBS domain-containing protein compare
MMJJ_RS08080 -4.6 -3.2 TIGR00300 family protein compare
MMJJ_RS04200 -4.5 -3.1 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00080 -4.5 -16.5 DUF166 domain-containing protein compare
MMJJ_RS00070 -4.5 -3.7 CooT family nickel-binding protein compare
MMJJ_RS02055 -4.5 -13.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS00580 -4.5 -1.6 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06725 -4.4 -8.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS01810 -4.4 -1.6 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS07650 -4.4 -22.8 formate/nitrite transporter family protein compare
MMJJ_RS07635 -4.2 -13.8 response regulator transcription factor compare
MMJJ_RS05445 -4.2 -1.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08065 -4.2 -2.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS00275 -4.2 -2.0 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS07995 -4.2 -9.2 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00450 -4.2 -1.8 DUF126 domain-containing protein compare
MMJJ_RS07640 -4.1 -21.4 cache domain-containing protein compare
MMJJ_RS08035 -4.1 -8.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04485 -4.0 -10.3 riboflavin synthase compare
MMJJ_RS03115 -4.0 -6.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS02920 -4.0 -1.7 30S ribosomal protein S27ae compare
MMJJ_RS05535 -4.0 -13.0 hypothetical protein compare
MMJJ_RS02190 -3.9 -18.7 molybdopterin biosynthesis protein compare
MMJJ_RS01935 -3.9 -2.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS02045 -3.8 -2.0 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04800 -3.8 -2.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS08020 -3.8 -8.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05190 -3.8 -7.0 gamma carbonic anhydrase family protein compare
MMJJ_RS00370 -3.8 -1.6 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06015 -3.8 -11.6 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS00645 -3.8 -12.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS00345 -3.8 -11.3 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS03150 -3.8 -3.6 2-phospho-L-lactate transferase compare
MMJJ_RS03895 -3.7 -3.0 hydrogenase expression/formation protein HypE compare
MMJJ_RS08000 -3.7 -9.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS06855 -3.7 -1.4 DUF2104 domain-containing protein compare
MMJJ_RS07720 -3.7 -1.6 UPF0058 family protein compare
MMJJ_RS01750 -3.7 -1.9 ferrous iron transport protein A compare
MMJJ_RS04685 -3.7 -5.0 carbamoyltransferase HypF compare
MMJJ_RS00205 -3.7 -3.6 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08625 -3.7 -2.5 magnesium/cobalt transporter CorA compare
MMJJ_RS06270 -3.6 -8.0 dethiobiotin synthase compare
MMJJ_RS06155 -3.6 -4.8 phosphatidylglycerophosphatase A compare
MMJJ_RS03055 -3.6 -2.3 hypothetical protein compare
MMJJ_RS03580 -3.6 -2.2 TIGR00303 family protein compare
MMJJ_RS06260 -3.5 -7.6 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS03965 -3.5 -1.3 DNA-directed RNA polymerase subunit L compare
MMJJ_RS09190 -3.5 -1.3 tryptophan synthase subunit beta compare
MMJJ_RS06490 -3.4 -2.0 methanogenesis marker 2 protein compare
MMJJ_RS00125 -3.4 -2.0 KEOPS complex subunit Cgi121 compare
MMJJ_RS03170 -3.4 -7.4 DUF5612 domain-containing protein compare
MMJJ_RS04155 -3.4 -3.3 hypothetical protein compare
MMJJ_RS03125 -3.4 -4.3 GMC oxidoreductase compare
MMJJ_RS06930 -3.4 -2.4 type II methionyl aminopeptidase compare
MMJJ_RS03500 -3.4 -10.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS06510 -3.4 -2.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS08095 -3.3 -3.2 cobyric acid synthase CobQ compare
MMJJ_RS03865 -3.3 -1.2 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS09375 -3.3 -1.2 hypothetical protein compare
MMJJ_RS05260 -3.3 -3.2 ATP-grasp domain-containing protein compare
MMJJ_RS06875 -3.3 -1.6 hypothetical protein compare
MMJJ_RS07410 -3.3 -2.2 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02040 -3.3 -1.7 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06000 -3.3 -5.0 cation:proton antiporter subunit C compare
MMJJ_RS03620 -3.3 -4.4 DUF2097 domain-containing protein compare
MMJJ_RS06375 -3.3 -3.3 UbiX family flavin prenyltransferase compare
MMJJ_RS08840 -3.3 -3.8 calcium/sodium antiporter compare
MMJJ_RS03110 -3.2 -2.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08250 -3.2 -4.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS06030 -3.2 -4.5 4Fe-4S binding protein compare
MMJJ_RS05575 -3.2 -4.2 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS03230 -3.1 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07950 -3.1 -1.8 4Fe-4S binding protein compare
MMJJ_RS06040 -3.1 -2.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03670 -3.1 -3.0 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS02090 -3.1 -4.2 tyramine--L-glutamate ligase compare
MMJJ_RS06175 -3.1 -1.5 DUF1743 domain-containing protein compare
MMJJ_RS07470 -3.1 -1.8 50S ribosome-binding GTPase compare
MMJJ_RS05065 -3.1 -3.6 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS00355 -3.1 -2.3 ribonuclease P protein component 4 compare
MMJJ_RS02200 -3.1 -9.0 chorismate pyruvate-lyase family protein compare
MMJJ_RS04980 -3.1 -4.5 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS06485 -3.1 -1.9 phosphoglycerate kinase compare
MMJJ_RS05950 -3.0 -2.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05765 -3.0 -0.9 flagellar protein E compare
MMJJ_RS06020 -3.0 -6.3 hypothetical protein compare
MMJJ_RS06600 -3.0 -3.1 DUF555 domain-containing protein compare
MMJJ_RS04475 -3.0 -4.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04700 -3.0 -5.6 deoxyhypusine synthase compare
MMJJ_RS04050 -3.0 -1.5 dihydroneopterin aldolase family protein compare
MMJJ_RS04995 -3.0 -4.5 Tfx family DNA-binding protein compare
MMJJ_RS08535 -3.0 -3.4 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS09055 -3.0 -9.0 NFACT family protein compare
MMJJ_RS08320 -3.0 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS04595 -2.9 -4.4 hypothetical protein compare
MMJJ_RS03200 -2.9 -1.8 uroporphyrinogen-III synthase compare
MMJJ_RS06180 -2.9 -1.8 tryptophan--tRNA ligase compare
MMJJ_RS08150 -2.9 -14.9 M24 family metallopeptidase compare
MMJJ_RS01600 -2.9 -1.6 radical SAM protein compare
MMJJ_RS07980 -2.9 -11.0 biotin synthase BioB compare
MMJJ_RS04615 -2.9 -4.7 methanogenesis marker 3 protein compare
MMJJ_RS01475 -2.9 -1.4 signal recognition particle-docking protein FtsY compare
MMJJ_RS05070 -2.9 -1.4 DNA primase catalytic subunit PriS compare
MMJJ_RS00560 -2.9 -3.0 homoisocitrate dehydrogenase compare
MMJJ_RS00600 -2.9 -1.5 hydroxymethylbilane synthase compare
MMJJ_RS03875 -2.9 -3.0 CBS domain-containing protein compare
MMJJ_RS06265 -2.9 -13.4 8-amino-7-oxononanoate synthase compare
MMJJ_RS06695 -2.8 -1.6 amidohydrolase compare
MMJJ_RS04970 -2.8 -1.2 DUF655 domain-containing protein compare
MMJJ_RS07785 -2.8 -1.6 fumarate reductase subunit A compare
MMJJ_RS08340 -2.8 -4.6 archaeoflavoprotein AfpA compare
MMJJ_RS02935 -2.8 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS05770 -2.8 -2.1 flagellar protein D compare
MMJJ_RS03900 -2.8 -13.2 phosphosulfolactate synthase compare
MMJJ_RS08155 -2.8 -3.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06240 -2.8 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS03660 -2.8 -2.5 DUF447 family protein compare
MMJJ_RS01880 -2.8 -2.1 RlmE family RNA methyltransferase compare
MMJJ_RS05995 -2.8 -1.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS06010 -2.8 -6.4 hypothetical protein compare
MMJJ_RS07360 -2.8 -1.0 TIGR00269 family protein compare
MMJJ_RS08870 -2.8 -1.0 2-isopropylmalate synthase compare
MMJJ_RS06625 -2.7 -1.2 pyruvate synthase subunit PorB compare
MMJJ_RS06835 -2.7 -10.0 4Fe-4S binding protein compare
MMJJ_RS05810 -2.7 -3.2 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS07155 -2.7 -9.4 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS03005 -2.7 -3.0 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS03760 -2.7 -2.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05540 -2.7 -17.3 LysR family transcriptional regulator compare
MMJJ_RS00360 -2.6 -1.5 adenosylhomocysteinase compare
MMJJ_RS07245 -2.6 -5.3 amidohydrolase family protein compare
MMJJ_RS06700 -2.6 -5.3 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04145 -2.6 -8.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS06255 -2.6 -4.6 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05490 -2.6 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06110 -2.6 -1.3 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS04650 -2.6 -4.8 nitrogenase iron protein compare
MMJJ_RS06025 -2.6 -14.2 4Fe-4S binding protein compare
MMJJ_RS06390 -2.6 -1.1 NADPH-dependent F420 reductase compare
MMJJ_RS06035 -2.6 -10.5 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS03615 -2.6 -1.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08010 -2.5 -6.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS08330 -2.5 -2.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS08500 -2.5 -7.7 L-sulfolactate dehydrogenase compare
MMJJ_RS07170 -2.5 -1.7 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS01350 -2.5 -6.6 sodium:proton antiporter compare
MMJJ_RS07725 -2.5 -6.2 DNA primase DnaG compare
MMJJ_RS03095 -2.5 -1.3 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00215 -2.5 -1.3 CCA tRNA nucleotidyltransferase compare
MMJJ_RS08850 -2.5 -1.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS03225 -2.4 -2.7 4Fe-4S binding protein compare
MMJJ_RS05595 -2.4 -2.9 hypothetical protein compare
MMJJ_RS01360 -2.4 -1.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07160 -2.4 -16.2 M20 family metallo-hydrolase compare
MMJJ_RS01415 -2.4 -1.7 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS06715 -2.4 -9.9 lactaldehyde dehydrogenase compare
MMJJ_RS03630 -2.4 -8.7 AMP phosphorylase compare
MMJJ_RS08055 -2.4 -7.0 methanogenesis marker 14 protein compare
MMJJ_RS06805 -2.4 -1.6 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS06635 -2.4 -12.3 4Fe-4S binding protein compare
MMJJ_RS09175 -2.4 -0.7 anthranilate synthase component I compare
MMJJ_RS06865 -2.4 -2.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01690 -2.4 -2.1 methanogenesis marker 12 protein compare
MMJJ_RS00550 -2.3 -6.7 AIR synthase-related protein compare
MMJJ_RS05415 -2.3 -1.1 hypothetical protein compare
MMJJ_RS04790 -2.3 -3.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07355 -2.3 -4.1 MoaD/ThiS family protein compare
MMJJ_RS05720 -2.3 -1.8 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS05780 -2.3 -2.5 flagellin compare
MMJJ_RS01200 -2.3 -1.5 PRC-barrel domain-containing protein compare
MMJJ_RS03190 -2.3 -1.9 phosphopyruvate hydratase compare
MMJJ_RS02275 -2.3 -3.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05655 -2.3 -5.9 HisA/HisF family protein compare
MMJJ_RS06185 -2.3 -5.6 cobalamin biosynthesis protein compare
MMJJ_RS08405 -2.3 -12.0 nickel-dependent hydrogenase large subunit compare
MMJJ_RS05330 -2.3 -1.3 DNA polymerase II large subunit compare
MMJJ_RS08335 -2.3 -1.9 ABC transporter ATP-binding protein compare
MMJJ_RS00270 -2.2 -2.3 adenosylcobinamide-GDP ribazoletransferase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t2 experiments

For nutrient t2 Sodium acetate across organisms