Experiment set1IT041 for Cupriavidus basilensis FW507-4G11

Compare to:

Ethanol carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.7 -4.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -6.3 -4.4 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS16265 -6.0 -5.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS30655 -5.8 -6.9 LysR family transcriptional regulator compare
RR42_RS06485 -5.6 -6.7 chorismate synthase compare
RR42_RS16255 -5.5 -8.3 sulfate adenylyltransferase compare
RR42_RS07425 -5.2 -7.9 IclR family transcriptional regulator compare
RR42_RS14400 -5.1 -3.5 isopropylmalate isomerase compare
RR42_RS33255 -5.1 -3.4 protein-tyrosine phosphatase compare
RR42_RS16250 -5.0 -7.5 sulfate adenylyltransferase compare
RR42_RS34255 -5.0 -5.9 aldehyde dehydrogenase compare
RR42_RS19005 -4.9 -4.8 3-dehydroquinate synthase compare
RR42_RS14385 -4.8 -6.5 3-isopropylmalate dehydrogenase compare
RR42_RS12175 -4.7 -12.0 malate synthase compare
RR42_RS16245 -4.6 -5.5 uroporphyrin-III methyltransferase compare
RR42_RS14320 -4.6 -6.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS14365 -4.5 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS01160 -4.5 -12.0 homoserine O-acetyltransferase compare
RR42_RS04475 -4.5 -9.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18295 -4.5 -12.9 anthranilate synthase component I compare
RR42_RS07555 -4.4 -3.0 potassium transporter Kup compare
RR42_RS18300 -4.4 -5.7 anthranilate synthase subunit II compare
RR42_RS00875 -4.3 -14.9 isocitrate dehydrogenase compare
RR42_RS13880 -4.1 -13.7 AMP-dependent synthetase compare
RR42_RS18855 -3.9 -3.7 preprotein translocase compare
RR42_RS05860 -3.8 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS02085 -3.8 -6.9 RNA polymerase subunit sigma-54 compare
RR42_RS33260 -3.7 -8.6 multidrug MFS transporter compare
RR42_RS16275 -3.7 -4.3 membrane protein compare
RR42_RS33250 -3.6 -8.5 tyrosine protein kinase compare
RR42_RS18850 -3.5 -3.8 preprotein translocase subunit TatC compare
RR42_RS16270 -3.5 -7.9 sulfite reductase compare
RR42_RS18990 -3.5 -18.3 glutamate synthase compare
RR42_RS30660 -3.5 -8.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS20205 -3.5 -3.6 chromosome partitioning protein compare
RR42_RS16280 -3.4 -6.3 transcriptional regulator compare
RR42_RS01845 -3.2 -2.7 glycerol-3-phosphate dehydrogenase compare
RR42_RS07605 -3.2 -6.3 poly-beta-hydroxybutyrate polymerase compare
RR42_RS16240 -3.0 -1.9 cobalamin biosynthesis protein CbiX compare
RR42_RS16260 -2.9 -2.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS33240 -2.8 -14.2 GDP-L-fucose synthase compare
RR42_RS04535 -2.8 -6.3 cysteine synthase compare
RR42_RS18985 -2.8 -5.4 glutamate synthase compare
RR42_RS01290 -2.8 -5.2 thiamine biosynthesis protein ThiC compare
RR42_RS03075 -2.6 -8.9 transcriptional regulator compare
RR42_RS19010 -2.6 -7.1 shikimate kinase compare
RR42_RS03080 -2.6 -3.1 recombinase RecA compare
RR42_RS04460 -2.6 -4.7 chorismate mutase compare
RR42_RS17645 -2.5 -7.0 shikimate dehydrogenase compare
RR42_RS33235 -2.5 -7.9 GDP-mannose 4,6-dehydratase compare
RR42_RS33210 -2.5 -5.8 teichoic acid biosynthesis protein compare
RR42_RS17505 -2.5 -11.2 NAD synthetase compare
RR42_RS26900 -2.4 -2.3 enoyl-CoA hydratase compare
RR42_RS21220 -2.4 -2.6 iron transporter FeoB compare
RR42_RS11795 -2.4 -1.8 PEP synthetase regulatory protein compare
RR42_RS15740 -2.4 -2.9 hypothetical protein compare
RR42_RS33245 -2.3 -7.4 mannose-1-phosphate guanyltransferase compare
RR42_RS17490 -2.2 -5.4 NADP transhydrogenase subunit alpha compare
RR42_RS12040 -2.2 -11.6 MFS transporter compare
RR42_RS03070 -2.2 -9.5 histidine kinase compare
RR42_RS14360 -2.1 -2.0 tryptophan synthase subunit alpha compare
RR42_RS26905 -2.1 -6.2 methylcrotonoyl-CoA carboxylase compare
RR42_RS18815 -2.0 -5.4 cytochrome C compare
RR42_RS17720 -2.0 -2.0 sugar kinase compare
RR42_RS34260 -2.0 -5.7 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS24605 -1.8 -6.6 TetR family transcriptional regulator compare
RR42_RS05955 -1.7 -1.5 hypothetical protein compare
RR42_RS02500 -1.7 -2.0 TetR family transcriptional regulator compare
RR42_RS18930 -1.7 -4.4 BolA family transcriptional regulator compare
RR42_RS32975 -1.7 -2.6 LysR family transcriptional regulator compare
RR42_RS04470 -1.7 -4.1 prephenate dehydrogenase compare
RR42_RS06250 -1.7 -2.3 dihydrodipicolinate synthase compare
RR42_RS15895 -1.7 -6.1 uroporphyrinogen III methyltransferase compare
RR42_RS05165 -1.7 -2.7 GntR family transcriptional regulator compare
RR42_RS18020 -1.6 -4.1 ornithine acetyltransferase compare
RR42_RS15035 -1.6 -4.2 ZIP zinc transporter compare
RR42_RS17565 -1.6 -8.9 LysR family transcriptional regulator compare
RR42_RS02705 -1.6 -2.4 Holliday junction DNA helicase RuvA compare
RR42_RS06020 -1.6 -1.5 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS22495 -1.5 -3.0 hypothetical protein compare
RR42_RS33650 -1.5 -2.9 IclR family transcriptional regulator compare
RR42_RS13180 -1.5 -8.4 3'-5' exonuclease compare
RR42_RS07565 -1.5 -6.3 transcription accessory protein compare
RR42_RS03345 -1.5 -5.1 recombinase XerD compare
RR42_RS01720 -1.5 -1.7 membrane protein compare
RR42_RS33575 -1.5 -3.1 hypothetical protein compare
RR42_RS19045 -1.4 -1.2 frataxin compare
RR42_RS01380 -1.4 -1.6 membrane protein compare
RR42_RS17555 -1.4 -1.5 hypothetical protein compare
RR42_RS07365 -1.4 -3.2 pyruvate dehydrogenase compare
RR42_RS12545 -1.4 -7.4 aminotransferase compare
RR42_RS18310 -1.4 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS17390 -1.4 -5.2 ATP-dependent DNA helicase RecG compare
RR42_RS13800 -1.4 -5.6 formyltetrahydrofolate deformylase compare
RR42_RS18820 -1.3 -5.4 cytochrome B compare
RR42_RS12185 -1.3 -1.8 LysR family transcriptional regulator compare
RR42_RS04895 -1.3 -7.8 serine/threonine protein phosphatase compare
RR42_RS18825 -1.3 -2.1 ubiquinol-cytochrome C reductase compare
RR42_RS00380 -1.3 -5.2 GntR family transcriptional regulator compare
RR42_RS07615 -1.3 -2.1 3-ketoacyl-ACP reductase compare
RR42_RS13875 -1.3 -9.8 sodium:solute symporter compare
RR42_RS21690 -1.2 -1.1 acetyltransferase compare
RR42_RS01505 -1.2 -1.6 tRNA-Cys compare
RR42_RS13910 -1.2 -5.9 glutamate racemase compare
RR42_RS00440 -1.2 -1.9 hypothetical protein compare
RR42_RS07620 -1.2 -4.5 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS07360 -1.2 -2.4 ATPase compare
RR42_RS02150 -1.2 -2.1 membrane protein compare
RR42_RS11790 -1.2 -7.3 phosphoenolpyruvate synthase compare
RR42_RS29040 -1.2 -2.7 histidyl-tRNA synthetase compare
RR42_RS15410 -1.2 -3.5 membrane protein compare
RR42_RS01785 -1.2 -3.0 PTS fructose transporter subunit IIA compare
RR42_RS08365 -1.2 -5.2 hypothetical protein compare
RR42_RS21820 -1.2 -2.3 GntR family transcriptional regulator compare
RR42_RS18670 -1.1 -4.0 metal-dependent hydrolase compare
RR42_RS01775 -1.1 -5.2 glutamate--cysteine ligase compare
RR42_RS14055 -1.1 -2.4 elongation factor 4 compare
RR42_RS17050 -1.1 -3.6 phosphoribosylglycinamide formyltransferase compare
RR42_RS08575 -1.1 -1.1 tail protein compare
RR42_RS01885 -1.1 -3.3 cytochrome C oxidase assembly protein compare
RR42_RS25200 -1.1 -4.0 TetR family transcriptional regulator compare
RR42_RS29490 -1.1 -2.5 toxin HipA compare
RR42_RS12550 -1.1 -2.1 hypothetical protein compare
RR42_RS04700 -1.1 -1.5 ribonuclease G compare
RR42_RS01780 -1.1 -5.0 glutathione synthetase compare
RR42_RS06740 -1.1 -1.9 hypothetical protein compare
RR42_RS31205 -1.1 -2.8 phospho-N-acetylmuramoyl-pentapeptide transferase compare
RR42_RS12925 -1.1 -2.1 ATPase compare
RR42_RS19090 -1.1 -1.2 cytochrome C compare
RR42_RS03095 -1.1 -1.1 succinyl-CoA synthetase subunit beta compare
RR42_RS19445 -1.0 -5.1 TetR family transcriptional regulator compare
RR42_RS11765 -1.0 -2.4 protein RnfH compare
RR42_RS03035 -1.0 -1.2 membrane protein compare
RR42_RS01920 -1.0 -2.5 protoheme IX farnesyltransferase compare
RR42_RS09760 -1.0 -2.1 hypothetical protein compare
RR42_RS02045 -1.0 -6.3 GTPase compare
RR42_RS28085 -1.0 -1.6 alkylphosphonate utilization protein PhnG compare
RR42_RS17060 -1.0 -7.2 histidine kinase compare
RR42_RS29610 -1.0 -1.0 cytochrome C2 compare
RR42_RS00115 -1.0 -1.3 hypothetical protein compare
RR42_RS13465 -1.0 -1.9 phosphate transporter permease subunit PstC compare
RR42_RS06095 -1.0 -2.7 hypothetical protein compare
RR42_RS06635 -1.0 -3.1 MerR family transcriptional regulator compare
RR42_RS34815 -1.0 -2.7 diguanylate cyclase compare
RR42_RS12240 -1.0 -1.0 hypothetical protein compare
RR42_RS24690 -1.0 -1.2 hypothetical protein compare
RR42_RS07140 -1.0 -1.3 hypothetical protein compare
RR42_RS04250 -1.0 -2.9 chemotaxis protein CheY compare
RR42_RS12180 -1.0 -1.8 haloacid dehalogenase compare
RR42_RS26350 -0.9 -2.1 bleomycin resistance protein compare
RR42_RS34520 -0.9 -0.9 transposase compare
RR42_RS29280 -0.9 -1.1 hypothetical protein compare
RR42_RS27065 -0.9 -1.6 hypothetical protein compare
RR42_RS28955 -0.9 -2.5 transcriptional regulator compare
RR42_RS13190 -0.9 -3.5 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS20775 -0.9 -0.8 hypothetical protein compare
RR42_RS16460 -0.9 -1.8 cupin compare
RR42_RS12615 -0.9 -1.8 LexA family transcriptional regulator compare
RR42_RS23650 -0.9 -1.8 flagellar protein compare
RR42_RS08350 -0.9 -2.0 hypothetical protein compare
RR42_RS06875 -0.9 -1.7 hypothetical protein compare
RR42_RS30640 -0.9 -3.6 DNA mismatch repair protein MutT compare
RR42_RS34650 -0.9 -3.7 LacI family transcriptional regulator compare
RR42_RS32085 -0.9 -1.2 hypothetical protein compare
RR42_RS10920 -0.9 -1.2 hypothetical protein compare
RR42_RS14355 -0.9 -4.0 DNA methylase N-4 compare
RR42_RS26740 -0.9 -1.1 protein serine/threonine phosphatase compare
RR42_RS03065 -0.9 -2.8 membrane protein compare
RR42_RS17055 -0.9 -4.7 LuxR family transcriptional regulator compare
RR42_RS21435 -0.9 -1.9 hypothetical protein compare
RR42_RS04880 -0.8 -4.5 coproporphyrinogen III oxidase compare
RR42_RS29865 -0.8 -2.1 hypothetical protein compare
RR42_RS08000 -0.8 -1.1 hypothetical protein compare
RR42_RS02310 -0.8 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS17400 -0.8 -3.9 queuine tRNA-ribosyltransferase compare
RR42_RS11885 -0.8 -4.7 (protein-PII) uridylyltransferase compare
RR42_RS19655 -0.8 -1.2 tRNA-Ala compare
RR42_RS19695 -0.8 -1.8 cytochrome C protein compare
RR42_RS28850 -0.8 -2.0 transcriptional regulator compare
RR42_RS17595 -0.8 -1.2 hypothetical protein compare
RR42_RS28315 -0.8 -3.2 GntR family transcriptional regulator compare
RR42_RS14075 -0.8 -4.0 anti-sigma factor compare
RR42_RS03525 -0.8 -1.5 type VI secretion system effector compare
RR42_RS30185 -0.8 -3.2 TetR family transcriptional regulator compare
RR42_RS10410 -0.8 -2.4 hypothetical protein compare
RR42_RS21150 -0.8 -1.3 hypothetical protein compare
RR42_RS31850 -0.8 -1.6 2-keto-4-pentenoate hydratase compare
RR42_RS23355 -0.8 -0.9 flagellar biosynthetic protein FliQ compare
RR42_RS03365 -0.8 -2.0 fructose ABC transporter, permease component (FrcC) (from data) compare
RR42_RS15890 -0.8 -3.5 heme biosynthesis protein HemY compare
RR42_RS09050 -0.8 -2.4 arylesterase compare
RR42_RS24810 -0.8 -2.7 hypothetical protein compare
RR42_RS13420 -0.8 -2.6 phosphohistidine phosphatase compare
RR42_RS35875 -0.8 -4.1 UDP-galactose-4-epimerase compare
RR42_RS02730 -0.8 -2.2 tRNA-dihydrouridine synthase B compare
RR42_RS17375 -0.8 -1.0 hypothetical protein compare
RR42_RS31530 -0.8 -1.8 histidine kinase compare
RR42_RS01880 -0.8 -3.4 cytochrome oxidase subunit I compare
RR42_RS00955 -0.8 -2.6 hydroxymethylglutaryl-CoA lyase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Ethanol in Cupriavidus basilensis FW507-4G11

For carbon source Ethanol across organisms