Experiment set1IT041 for Burkholderia phytofirmans PsJN

Compare to:

LB with Sodium Chloride 200 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS15075 -3.8 -3.5 dihydrokaempferol 4-reductase compare
BPHYT_RS01485 -3.7 -1.7 histidine kinase compare
BPHYT_RS04285 -3.6 -3.1 rhamnosyltransferase compare
BPHYT_RS08850 -3.6 -3.1 transcriptional regulator compare
BPHYT_RS02965 -3.4 -3.7 membrane protein compare
BPHYT_RS04290 -3.3 -3.1 glycosyl transferase family 2 compare
BPHYT_RS09315 -3.1 -1.5 chemotaxis protein CheY compare
BPHYT_RS17760 -3.0 -11.2 ABC transporter permease compare
BPHYT_RS06190 -3.0 -5.0 heptosyltransferase compare
BPHYT_RS15710 -3.0 -2.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33515 -2.9 -9.9 porin compare
BPHYT_RS04385 -2.9 -5.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS17765 -2.9 -7.4 toluene ABC transporter ATP-binding protein compare
BPHYT_RS17745 -2.8 -9.1 toluene tolerance family protein compare
BPHYT_RS03480 -2.7 -4.0 ferritin compare
BPHYT_RS14865 -2.6 -3.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14855 -2.6 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS01435 -2.6 -21.5 LysR family transcriptional regulator compare
BPHYT_RS17640 -2.5 -4.1 2-alkenal reductase compare
BPHYT_RS23840 -2.5 -5.3 methyltransferase compare
BPHYT_RS02860 -2.4 -1.6 membrane protein compare
BPHYT_RS04370 -2.4 -2.7 glycosyl transferase compare
BPHYT_RS27175 -2.3 -1.3 DNA-binding protein compare
BPHYT_RS16710 -2.2 -1.9 LysR family transcriptional regulator compare
BPHYT_RS17755 -2.2 -5.2 ABC transporter substrate-binding protein compare
BPHYT_RS18610 -2.2 -9.1 lytic transglycosylase compare
BPHYT_RS33845 -2.1 -3.8 bacteriocin production protein compare
BPHYT_RS09620 -2.1 -2.9 aminodeoxychorismate lyase compare
BPHYT_RS01455 -2.1 -1.3 peptide deformylase compare
BPHYT_RS33850 -2.0 -2.2 sporulation protein compare
BPHYT_RS13605 -1.9 -1.2 tRNA-Pro compare
BPHYT_RS02285 -1.9 -4.8 cell division protein compare
BPHYT_RS16175 -1.8 -2.0 hemolysin D compare
BPHYT_RS02570 -1.8 -4.0 phosphocarrier protein HPr compare
BPHYT_RS14060 -1.8 -2.6 peptidase M23 compare
BPHYT_RS30490 -1.7 -1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS03655 -1.7 -1.5 membrane protein compare
BPHYT_RS06530 -1.7 -2.1 membrane protein compare
BPHYT_RS02415 -1.7 -7.8 cytochrome C550 compare
BPHYT_RS34815 -1.6 -2.8 ABC transporter compare
BPHYT_RS06325 -1.6 -6.1 ATPase compare
BPHYT_RS26925 -1.5 -2.3 NIPSNAP family containing protein compare
BPHYT_RS06790 -1.5 -6.9 hypothetical protein compare
BPHYT_RS30140 -1.5 -1.1 3-methylitaconate isomerase compare
BPHYT_RS11705 -1.5 -1.7 hypothetical protein compare
BPHYT_RS12510 -1.5 -2.2 RNA-binding protein compare
BPHYT_RS06175 -1.5 -4.4 LPS biosynthesis compare
BPHYT_RS26080 -1.4 -1.6 ABC transporter ATPase compare
BPHYT_RS10095 -1.4 -2.0 integrase compare
BPHYT_RS09100 -1.4 -4.4 stationary phase survival protein SurE compare
BPHYT_RS18340 -1.4 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS09000 -1.4 -1.4 competence protein ComE compare
BPHYT_RS04415 -1.4 -2.6 N-acylglucosamine 2-epimerase compare
BPHYT_RS16250 -1.3 -1.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS34810 -1.3 -5.6 RND transporter compare
BPHYT_RS03170 -1.3 -2.9 membrane protein compare
BPHYT_RS11960 -1.3 -1.4 MarR family transcriptional regulator compare
BPHYT_RS34805 -1.3 -5.8 ABC transporter compare
BPHYT_RS12820 -1.3 -5.1 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS33580 -1.3 -4.3 geranyltranstransferase compare
BPHYT_RS16255 -1.3 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS09860 -1.2 -1.1 pilus assembly protein PilP compare
BPHYT_RS16835 -1.2 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16225 -1.2 -8.0 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS08665 -1.2 -1.2 hypothetical protein compare
BPHYT_RS20235 -1.2 -3.0 iron ABC transporter compare
BPHYT_RS34780 -1.2 -2.9 phytoene synthase compare
BPHYT_RS17860 -1.2 -4.5 transposase compare
BPHYT_RS00815 -1.2 -1.1 hypothetical protein compare
BPHYT_RS22260 -1.2 -1.8 hypothetical protein compare
BPHYT_RS03400 -1.1 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS11080 -1.1 -2.5 hypothetical protein compare
BPHYT_RS06535 -1.1 -2.6 membrane protein compare
BPHYT_RS28485 -1.1 -1.2 GntR family transcriptional regulator compare
BPHYT_RS14895 -1.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS05285 -1.1 -1.4 hypothetical protein compare
BPHYT_RS06105 -1.1 -1.3 hypothetical protein compare
BPHYT_RS36525 -1.1 -2.5 hypothetical protein compare
BPHYT_RS02575 -1.1 -6.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS02610 -1.1 -2.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS09655 -1.1 -5.0 mechanosensitive ion channel protein MscS compare
BPHYT_RS01935 -1.1 -5.9 lipoprotein compare
BPHYT_RS05650 -1.1 -1.3 hypothetical protein compare
BPHYT_RS27030 -1.1 -1.3 transcriptional regulator compare
BPHYT_RS16215 -1.0 -3.9 sensor histidine kinase compare
BPHYT_RS20245 -1.0 -3.6 iron ABC transporter substrate-binding protein compare
BPHYT_RS01630 -1.0 -2.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS10305 -1.0 -1.7 hypothetical protein compare
BPHYT_RS23460 -1.0 -1.0 AraC family transcriptional regulator compare
BPHYT_RS29185 -1.0 -1.7 sugar ABC transporter permease compare
BPHYT_RS17075 -1.0 -3.2 ABC transporter permease compare
BPHYT_RS34765 -1.0 -2.2 chemotaxis protein compare
BPHYT_RS09105 -1.0 -2.3 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS01950 -1.0 -2.1 phosphoheptose isomerase compare
BPHYT_RS14670 -1.0 -1.1 hypothetical protein compare
BPHYT_RS33150 -1.0 -0.9 beta-lactamase compare
BPHYT_RS29320 -1.0 -1.9 histidine kinase compare
BPHYT_RS10995 -1.0 -1.6 GntR family transcriptional regulator compare
BPHYT_RS21335 -1.0 -1.6 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS14840 -1.0 -4.3 lytic transglycosylase compare
BPHYT_RS34760 -1.0 -4.5 sensor histidine kinase compare
BPHYT_RS29750 -1.0 -4.1 phosphoenolpyruvate phosphomutase compare
BPHYT_RS09445 -1.0 -3.8 trigger factor compare
BPHYT_RS22455 -1.0 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS04095 -0.9 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS24220 -0.9 -1.6 alpha/beta hydrolase compare
BPHYT_RS30605 -0.9 -3.0 MlrC domain-containing protein compare
BPHYT_RS15890 -0.9 -1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS23645 -0.9 -2.9 phosphohydrolase compare
BPHYT_RS28830 -0.9 -1.0 LysR family transcriptional regulator compare
BPHYT_RS04890 -0.9 -1.0 cobalamin biosynthesis protein CobD compare
BPHYT_RS04955 -0.9 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS36035 -0.9 -1.0 hypothetical protein compare
BPHYT_RS27655 -0.9 -0.9 potassium transporter compare
BPHYT_RS19545 -0.9 -3.5 nuclear protein SET compare
BPHYT_RS30285 -0.9 -1.8 succinate-semialdehyde dehydrogenase compare
BPHYT_RS10645 -0.9 -1.1 cyanate hydratase compare
BPHYT_RS07705 -0.9 -1.6 arginine succinyltransferase compare
BPHYT_RS11245 -0.9 -1.9 ATPase compare
BPHYT_RS22910 -0.9 -1.0 hypothetical protein compare
BPHYT_RS04310 -0.9 -4.7 group 1 glycosyl transferase compare
BPHYT_RS16880 -0.9 -1.3 malic enzyme compare
BPHYT_RS19335 -0.9 -2.7 hypothetical protein compare
BPHYT_RS07275 -0.9 -2.1 kynureninase compare
BPHYT_RS18465 -0.9 -5.5 membrane protein compare
BPHYT_RS19305 -0.9 -5.1 ATP-dependent DNA helicase Rep compare
BPHYT_RS09905 -0.9 -1.3 hypothetical protein compare
BPHYT_RS26750 -0.9 -1.4 aldolase compare
BPHYT_RS16180 -0.9 -0.9 TetR family transcriptional regulator compare
BPHYT_RS17035 -0.9 -1.9 sugar kinase compare
BPHYT_RS11745 -0.8 -1.1 (2Fe-2S)-binding protein compare
BPHYT_RS19570 -0.8 -6.7 sodium/hydrogen exchanger compare
BPHYT_RS09980 -0.8 -1.2 TetR family transcriptional regulator compare
BPHYT_RS11825 -0.8 -1.1 cytosine deaminase compare
BPHYT_RS19565 -0.8 -5.3 gamma-glutamyl:cysteine ligase compare
BPHYT_RS01730 -0.8 -1.7 serine/threonine protein kinase compare
BPHYT_RS11155 -0.8 -1.0 hypothetical protein compare
BPHYT_RS16245 -0.8 -2.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS12160 -0.8 -2.6 peptide deformylase compare
BPHYT_RS01315 -0.8 -1.9 cupin compare
BPHYT_RS35770 -0.8 -0.9 glyoxalase compare
BPHYT_RS14845 -0.8 -1.6 cysteine synthase compare
BPHYT_RS14735 -0.8 -0.9 hypothetical protein compare
BPHYT_RS03240 -0.8 -1.8 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS07480 -0.8 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS28245 -0.8 -1.2 MFS transporter compare
BPHYT_RS26025 -0.8 -0.7 hypothetical protein compare
BPHYT_RS20000 -0.8 -1.9 serine/threonine protein kinase compare
BPHYT_RS12615 -0.8 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS02130 -0.8 -2.2 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS06320 -0.8 -1.3 chemotaxis protein CheY compare
BPHYT_RS16475 -0.8 -2.3 hypothetical protein compare
BPHYT_RS20790 -0.8 -1.3 TetR family transcriptional regulator compare
BPHYT_RS35205 -0.8 -1.5 hypothetical protein compare
BPHYT_RS03100 -0.8 -2.4 peptidase compare
BPHYT_RS03280 -0.8 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS11870 -0.8 -3.2 AraC family transcriptional regulator compare
BPHYT_RS36275 -0.8 -1.0 hypothetical protein compare
BPHYT_RS28715 -0.8 -1.9 cupin compare
BPHYT_RS08245 -0.8 -2.4 anti-sigma factor compare
BPHYT_RS11685 -0.8 -1.0 phasin family protein compare
BPHYT_RS25710 -0.8 -1.4 hypothetical protein compare
BPHYT_RS18415 -0.8 -2.1 hypothetical protein compare
BPHYT_RS09515 -0.8 -2.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS22265 -0.8 -0.8 hypothetical protein compare
BPHYT_RS29110 -0.8 -1.4 DNA-directed DNA polymerase compare
BPHYT_RS00855 -0.8 -1.5 hypothetical protein compare
BPHYT_RS33745 -0.8 -3.0 metallophosphoesterase compare
BPHYT_RS21030 -0.8 -2.5 ABC transporter ATP-binding protein compare
BPHYT_RS09870 -0.8 -2.0 membrane protein compare
BPHYT_RS02985 -0.8 -1.6 MaoC family dehydratase compare
BPHYT_RS19785 -0.8 -1.3 chemotaxis protein CheY compare
BPHYT_RS29655 -0.8 -1.5 polysaccharide deacetylase compare
BPHYT_RS26715 -0.8 -2.7 GTP-binding protein compare
BPHYT_RS26300 -0.8 -1.5 ATP-dependent DNA ligase compare
BPHYT_RS05620 -0.8 -1.0 CsbD family protein compare
BPHYT_RS25875 -0.8 -1.0 type III secretion protein compare
BPHYT_RS02590 -0.7 -4.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15615 -0.7 -1.9 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS04215 -0.7 -1.8 hypothetical protein compare
BPHYT_RS17520 -0.7 -2.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS25980 -0.7 -0.8 urea carboxylase compare
BPHYT_RS08020 -0.7 -2.6 hypothetical protein compare
BPHYT_RS20475 -0.7 -0.9 hypothetical protein compare
BPHYT_RS05300 -0.7 -1.4 polyketide cyclase compare
BPHYT_RS25560 -0.7 -1.4 RNA polymerase sigma factor compare
BPHYT_RS35675 -0.7 -1.2 short-chain dehydrogenase compare
BPHYT_RS18910 -0.7 -1.3 FlgN compare
BPHYT_RS21625 -0.7 -0.8 LysR family transcriptional regulator compare
BPHYT_RS28575 -0.7 -0.8 transcriptional regulator compare
BPHYT_RS23395 -0.7 -1.3 glycosyl transferase compare
BPHYT_RS16270 -0.7 -2.6 phosphoglycerate kinase compare
BPHYT_RS12465 -0.7 -1.2 inositol monophosphatase compare
BPHYT_RS01235 -0.7 -1.5 hypothetical protein compare
BPHYT_RS21340 -0.7 -1.4 2OG-Fe(II) oxygenase compare
BPHYT_RS15015 -0.7 -0.9 ArsR family transcriptional regulator compare
BPHYT_RS15490 -0.7 -3.2 coproporphyrinogen III oxidase compare
BPHYT_RS21855 -0.7 -2.0 hypothetical protein compare
BPHYT_RS28680 -0.7 -1.9 porin compare
BPHYT_RS34675 -0.7 -3.2 DNA-binding protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Sodium Chloride across organisms