Experiment set1IT040 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with sodium fluoride 12.5 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_4063 -3.6 -4.2 CrcB protein compare
Pf1N1B4_2621 -2.1 -2.4 PspA/IM30 family protein compare
Pf1N1B4_4062 -2.0 -5.4 FIG065221: Holliday junction DNA helicase conserved
Pf1N1B4_106 -1.8 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3985 -1.8 -1.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_1159 -1.8 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_1403 -1.8 -6.8 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2105 -1.7 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_7 -1.6 -4.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_5724 -1.6 -2.5 High-affinity iron permease compare
Pf1N1B4_2937 -1.6 -4.0 FIG00953775: hypothetical protein compare
Pf1N1B4_4029 -1.5 -3.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5147 -1.5 -2.5 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
Pf1N1B4_1975 -1.5 -2.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_538 -1.5 -2.7 hypothetical protein compare
Pf1N1B4_2552 -1.5 -3.0 OsmC/Ohr family protein compare
Pf1N1B4_5059 -1.5 -2.6 Transcriptional regulator, LysR family compare
Pf1N1B4_262 -1.4 -10.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_4627 -1.4 -3.2 FIG00957600: hypothetical protein compare
Pf1N1B4_4028 -1.4 -3.2 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1370 -1.3 -1.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_4035 -1.3 -2.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_6036 -1.3 -2.7 FIG00953132: hypothetical protein compare
Pf1N1B4_2665 -1.3 -8.2 Transcriptional regulator conserved
Pf1N1B4_627 -1.3 -2.7 hypothetical protein compare
Pf1N1B4_4030 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4039 -1.2 -4.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_3352 -1.2 -2.8 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_3305 -1.2 -2.5 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_5725 -1.2 -1.9 High-affinity iron permease compare
Pf1N1B4_4335 -1.2 -2.1 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_3627 -1.2 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_197 -1.2 -2.1 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_2734 -1.2 -1.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_2338 -1.2 -5.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1958 -1.2 -1.9 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1636 -1.2 -1.5 FIG00954739: hypothetical protein compare
Pf1N1B4_4397 -1.2 -2.3 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_2224 -1.2 -1.8 FIG00953390: hypothetical protein compare
Pf1N1B4_5649 -1.2 -1.9 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3091 -1.2 -3.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_4317 -1.1 -2.0 DNA/RNA non-specific endonuclease compare
Pf1N1B4_3373 -1.1 -3.1 FIG00954689: hypothetical protein compare
Pf1N1B4_5239 -1.1 -2.5 hypothetical protein compare
Pf1N1B4_3044 -1.1 -2.9 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_4446 -1.1 -2.0 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_2337 -1.1 -3.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_617 -1.1 -1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_1615 -1.1 -3.0 Glutaredoxin 3 (Grx3) compare
Pf1N1B4_5051 -1.1 -2.4 Sensor protein DegS compare
Pf1N1B4_3508 -1.1 -2.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_3356 -1.1 -1.6 Cyclic nucleotide-binding protein compare
Pf1N1B4_4715 -1.1 -1.2 Transcriptional regulator compare
Pf1N1B4_5307 -1.1 -3.1 hypothetical protein compare
Pf1N1B4_4656 -1.1 -3.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_240 -1.0 -1.7 Transcriptional regulators compare
Pf1N1B4_4212 -1.0 -1.7 Gfa-like protein compare
Pf1N1B4_2082 -1.0 -2.6 Uncharacterized protein ImpA compare
Pf1N1B4_2736 -1.0 -2.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_3222 -1.0 -1.4 Ferredoxin compare
Pf1N1B4_5512 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_4474 -1.0 -1.9 transcription regulator protein compare
Pf1N1B4_3325 -1.0 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3129 -1.0 -1.7 Prophage baseplate assembly protein V compare
Pf1N1B4_886 -0.9 -1.7 FIG137478: Hypothetical protein compare
Pf1N1B4_4038 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_399 -0.9 -1.6 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1317 -0.9 -2.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_1874 -0.9 -2.3 FIG00953549: hypothetical protein compare
Pf1N1B4_69 -0.9 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3328 -0.9 -1.5 Rhodanese-like domain protein compare
Pf1N1B4_5255 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5498 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_5920 -0.9 -2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_5663 -0.9 -1.8 Periplasmic sugar-binding domain protein compare
Pf1N1B4_2144 -0.9 -4.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_3525 -0.9 -1.7 hydrolase, alpha/beta fold family compare
Pf1N1B4_2208 -0.9 -3.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_3241 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_5774 -0.9 -2.5 Nitrite reductase associated c-type cytochorome NirN compare
Pf1N1B4_4250 -0.9 -1.6 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_5880 -0.9 -1.9 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_5112 -0.9 -1.7 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_5446 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_4476 -0.9 -2.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_5330 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_5439 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_268 -0.8 -2.9 Spermidine synthase (EC 2.5.1.16) compare
Pf1N1B4_2284 -0.8 -3.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_208 -0.8 -2.1 Two-component system response regulator QseB compare
Pf1N1B4_3939 -0.8 -1.8 FIG00953489: hypothetical protein compare
Pf1N1B4_5282 -0.8 -2.3 Phage protein compare
Pf1N1B4_5859 -0.8 -2.4 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_2492 -0.8 -2.4 FIG00954771: hypothetical protein compare
Pf1N1B4_438 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_5706 -0.8 -2.3 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_1886 -0.8 -2.5 FIG00956005: hypothetical protein compare
Pf1N1B4_4765 -0.8 -1.1 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4100 -0.8 -1.6 probable transmembrane protein compare
Pf1N1B4_4648 -0.8 -1.6 transcriptional regulator, MerR family compare
Pf1N1B4_4736 -0.8 -1.5 Fap amyloid fibril minor component compare
Pf1N1B4_4040 -0.8 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3145 -0.8 -2.3 Decarboxylase family protein compare
Pf1N1B4_1328 -0.8 -1.6 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4953 -0.8 -2.1 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_1057 -0.8 -1.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5838 -0.8 -1.5 FIG00956589: hypothetical protein compare
Pf1N1B4_3368 -0.8 -1.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3443 -0.8 -1.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_2005 -0.8 -1.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_3961 -0.8 -1.6 transcriptional regulator, MerR family compare
Pf1N1B4_1492 -0.8 -1.0 FIG00959437: hypothetical protein compare
Pf1N1B4_324 -0.8 -1.4 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_3636 -0.8 -1.4 FIG00953562: hypothetical protein compare
Pf1N1B4_5451 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4810 -0.7 -1.5 Polymyxin resistance protein PmrM compare
Pf1N1B4_733 -0.7 -1.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_1331 -0.7 -1.9 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf1N1B4_4478 -0.7 -1.4 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_6013 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_224 -0.7 -1.5 Isohexenylglutaconyl-CoA hydratase compare
Pf1N1B4_3911 -0.7 -2.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_2433 -0.7 -1.4 FIG00953108: hypothetical protein compare
Pf1N1B4_4362 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_135 -0.7 -1.8 Pyoverdine efflux carrier and ATP binding protein compare
Pf1N1B4_157 -0.7 -1.7 ThiJ/PfpI family protein compare
Pf1N1B4_5917 -0.7 -1.6 Multimeric flavodoxin WrbA compare
Pf1N1B4_5284 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_1294 -0.7 -1.4 VgrG protein compare
Pf1N1B4_4594 -0.7 -1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_4805 -0.7 -2.4 ABC transporter permease protein compare
Pf1N1B4_5329 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_4823 -0.7 -1.9 Paraquat-inducible protein A compare
Pf1N1B4_2983 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4027 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_1365 -0.7 -1.9 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_5853 -0.7 -1.4 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_3905 -0.7 -2.1 FIG00953423: hypothetical protein compare
Pf1N1B4_2856 -0.7 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3403 -0.7 -1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_4436 -0.7 -1.7 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_3657 -0.7 -1.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_890 -0.7 -1.6 DNA recombination and repair protein RecO compare
Pf1N1B4_1116 -0.7 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf1N1B4_1095 -0.7 -4.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf1N1B4_4671 -0.7 -1.5 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5720 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_5084 -0.7 -1.9 Capsular polysaccharide synthesis enzyme CpsD, exopolysaccharide synthesis compare
Pf1N1B4_2783 -0.7 -1.2 Transcription elongation factor GreB-related protein compare
Pf1N1B4_4336 -0.7 -1.6 FMN-dependent NADH-azoreductase compare
Pf1N1B4_2102 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_2908 -0.7 -3.7 Integrase compare
Pf1N1B4_4259 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_5955 -0.7 -2.2 Permease of the major facilitator superfamily compare
Pf1N1B4_3965 -0.7 -1.4 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4326 -0.6 -1.1 N-carbamoylputrescine amidase (3.5.1.53) compare
Pf1N1B4_5995 -0.6 -1.3 Transporter, MFS superfamily compare
Pf1N1B4_501 -0.6 -1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_4929 -0.6 -1.5 Opine oxidase subunit B compare
Pf1N1B4_5342 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_1613 -0.6 -1.4 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_868 -0.6 -2.7 tRNA:Cm32/Um32 methyltransferase compare
Pf1N1B4_3529 -0.6 -2.5 Membrane bound c-di-GMP receptor LapD compare
Pf1N1B4_3976 -0.6 -3.0 Transmembrane regulator protein PrtR compare
Pf1N1B4_2171 -0.6 -1.7 Tyrosine recombinase XerC compare
Pf1N1B4_2350 -0.6 -1.3 UPF0301 protein YqgE compare
Pf1N1B4_5708 -0.6 -1.2 Transcriptional regulator, TetR family compare
Pf1N1B4_5701 -0.6 -1.8 FIG00955602: hypothetical protein compare
Pf1N1B4_1358 -0.6 -1.8 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_5618 -0.6 -1.2 Excinuclease ABC subunit C compare
Pf1N1B4_4806 -0.6 -1.2 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_550 -0.6 -2.2 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
Pf1N1B4_5760 -0.6 -1.5 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_2461 -0.6 -2.6 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Pf1N1B4_5442 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_5787 -0.6 -2.2 Gifsy-2 prophage protein compare
Pf1N1B4_2987 -0.6 -2.0 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_3795 -0.6 -0.8 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_3595 -0.6 -1.1 Flagellin protein FlaG compare
Pf1N1B4_4787 -0.6 -1.7 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_1568 -0.6 -1.6 Twin-arginine translocation protein TatB compare
Pf1N1B4_4957 -0.6 -1.0 Transcriptional regulator, TetR family compare
Pf1N1B4_3048 -0.6 -2.3 Outer membrane lipoprotein omp16 precursor compare
Pf1N1B4_1661 -0.6 -2.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_4151 -0.6 -1.6 FIG00960153: hypothetical protein compare
Pf1N1B4_3566 -0.6 -2.9 Phenylalanine-4-hydroxylase (EC 1.14.16.1) compare
Pf1N1B4_4632 -0.6 -1.4 Exonuclease SbcC compare
Pf1N1B4_5005 -0.6 -1.5 LysR family transcriptional regulator STM2281 compare
Pf1N1B4_5804 -0.6 -1.1 Muconolactone isomerase (EC 5.3.3.4) compare
Pf1N1B4_3111 -0.6 -0.8 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_1049 -0.6 -2.2 Glycosyl transferase, group 1 family protein compare
Pf1N1B4_1519 -0.6 -1.6 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_1094 -0.6 -1.3 FIG005080: Possible exported protein compare
Pf1N1B4_2486 -0.6 -1.0 hypothetical protein compare
Pf1N1B4_493 -0.6 -1.5 hypothetical protein compare
Pf1N1B4_5492 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_2039 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_5866 -0.6 -1.9 ThiJ/PfpI family protein compare
Pf1N1B4_5322 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_4601 -0.6 -1.5 Streptothricin acetyltransferase, Streptomyces lavendulae type compare


Specific Phenotypes

For 3 genes in this experiment

For stress sodium fluoride in Pseudomonas fluorescens FW300-N1B4

For stress sodium fluoride across organisms