Experiment set1IT040 for Caulobacter crescentus NA1000

Compare to:

a-Cyclodextrin carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01220 +4.2 11.2 7-keto-8-aminopelargonate synthetase compare
CCNA_01851 +4.0 29.3 quinol cytochrome oxidase polypeptide II compare
CCNA_00264 +3.9 23.6 C4-dicarboxylate transport protein compare
CCNA_01979 +3.9 20.2 LexA repressor compare
CCNA_00684 +3.8 14.3 anti-sigma factor, ChrR-family compare
CCNA_01848 +3.7 18.7 quinol cytochrome oxidase polypeptide IV compare
CCNA_01712 +3.6 26.7 CopY/TcrY family transcriptional repressor compare
CCNA_02367 +3.5 22.4 CelR-family transcriptional regulator compare
CCNA_01593 +3.5 19.8 Xaa-pro aminopeptidase compare
CCNA_02103 +3.3 12.5 hypothetical protein compare
CCNA_01849 +3.3 17.0 quinol cytochrome oxidase polypeptide III compare
CCNA_01850 +3.3 22.4 quinol cytochrome oxidase polypeptide I compare
CCNA_02957 +3.3 9.1 ArsR-family transcriptional regulator compare
CCNA_00699 +3.3 13.6 LSU ribosomal protein L28P compare
CCNA_03064 +3.3 18.1 PadR-family transcriptional regulator compare
CCNA_02646 +3.2 4.9 cell division protein MraZ compare
CCNA_01059 +3.2 28.5 S-layer protein rsaA compare
CCNA_03030 +3.2 17.7 cytochrome c2 compare
CCNA_00296 +3.2 15.7 phosphate regulon response regulator PhoB compare
CCNA_01780 +3.1 20.7 exopolyphosphatase compare
CCNA_02448 +3.1 15.6 hypothetical protein compare
CCNA_02387 +3.1 21.7 glutathione reductase compare
CCNA_01525 +3.1 14.3 flagellar biosynthesis repressor flbT compare
CCNA_01840 +3.1 22.8 MerR-family transcriptional regulator compare
CCNA_03287 +3.1 23.9 PadR-family transcriptional regulator compare
CCNA_02447 +3.1 15.9 PspA/IM30 family regulatory protein compare
CCNA_03524 +3.0 18.6 di-/tripeptide transporter compare
CCNA_03252 +3.0 20.1 CopY/TcrY-family transcriptional regulator compare
CCNA_02416 +3.0 14.1 DNA-binding protein HU compare
CCNA_03612 +2.9 14.0 HTH XRE-family transcriptional regulator compare
CCNA_01684 +2.9 13.8 phenylalanine-4-hydroxylase compare
CCNA_00846 +2.9 22.5 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_02000 +2.9 2.7 SSU ribosomal protein S2P compare
CCNA_01094 +2.9 5.6 hypothetical protein compare
CCNA_02021 +2.9 8.3 hypothetical protein compare
CCNA_03012 +2.9 12.9 peroxiredoxin compare
CCNA_03289 +2.9 19.0 HicB-family RNA-binding protein compare
CCNA_02980 +2.9 17.2 tryptophan 2,3-dioxygenase compare
CCNA_01573 +2.8 13.5 ArsR-family transcriptional regulator compare
CCNA_02591 +2.8 10.7 glutaredoxin compare
CCNA_03961 +2.8 8.4 hypothetical protein compare
CCNA_03271 +2.8 17.9 methionine gamma-lyase compare
CCNA_00505 +2.8 11.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03479 +2.8 13.4 MarR-family transcriptional regulator compare
CCNA_02025 +2.7 6.0 hypothetical protein compare
CCNA_01801 +2.7 10.8 hypothetical protein compare
CCNA_03280 +2.7 21.8 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01526 +2.7 9.7 flagellar biosynthesis regulatory protein flaF compare
CCNA_01931 +2.7 14.4 TetR-family transcriptional regulator compare
CCNA_03325 +2.7 9.7 hypothetical protein compare
CCNA_00518 +2.7 17.6 LSU ribosomal protein L25P compare
CCNA_02026 +2.7 5.7 hypothetical protein compare
CCNA_03043 +2.7 8.4 type IV pilin protein pilA compare
CCNA_03689 +2.7 16.8 alanine dehydrogenase compare
CCNA_01223 +2.6 14.0 acyl-CoA synthetase compare
CCNA_01804 +2.6 14.2 glutathione peroxidase compare
CCNA_03989 +2.6 18.5 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01913 +2.6 15.7 MarR-family transcriptional regulator compare
CCNA_01742 +2.6 11.2 hypothetical protein compare
CCNA_00362 +2.6 5.8 zinc uptake regulation protein compare
CCNA_00028 +2.6 8.4 TonB-dependent receptor compare
CCNA_03951 +2.6 10.0 hypothetical protein compare
CCNA_02619 +2.6 18.5 stomatin/prohibitin-related protein compare
CCNA_00756 +2.6 4.9 hypothetical protein compare
CCNA_03863 +2.5 5.9 hypothetical protein compare
CCNA_02287 +2.5 12.8 TetR-family transcriptional regulator compare
CCNA_02617 +2.5 17.1 histidinol-phosphate aminotransferase compare
CCNA_01453 +2.5 6.8 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01942 +2.5 9.7 Rrf2 family protein compare
CCNA_02616 +2.5 14.9 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00162 +2.5 10.4 hypothetical protein compare
CCNA_03062 +2.5 12.2 cell wall hydrolase family protein compare
CCNA_02379 +2.5 10.9 hypothetical protein compare
CCNA_02030 +2.5 4.1 hypothetical protein compare
CCNA_03123 +2.4 14.3 ArsR-family transcriptional regulator compare
CCNA_00847 +2.4 9.5 leucine-responsive regulatory protein compare
CCNA_01847 +2.4 14.9 cytochrome c oxidase assembly protein Surf1 compare
CCNA_02368 +2.4 17.1 alpha-glucosidase compare
CCNA_01763 +2.4 15.0 multifunctional aminopeptidase compare
CCNA_01186 +2.4 10.6 hypothetical protein compare
CCNA_01528 +2.4 12.3 flagellin fljK compare
CCNA_01218 +2.3 7.8 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01420 +2.3 11.0 NrdR family transcriptional regulator compare
CCNA_00447 +2.3 10.4 chemotaxis protein cheD compare
CCNA_02081 +2.3 5.0 Sec-independent protein translocase protein tatB compare
CCNA_01221 +2.3 3.9 acyl carrier protein compare
CCNA_00895 +2.3 11.2 hypothetical protein compare
CCNA_00292 +2.3 4.3 phosphate transport system permease protein pstC compare
CCNA_00939 +2.3 8.3 MarR-family transcriptional regulator compare
CCNA_02004 +2.3 3.4 SOS-induced inhibitor of cell division SidA compare
CCNA_03519 +2.3 5.9 PadR-family transcriptional regulator compare
CCNA_01802 +2.2 3.9 hypothetical protein compare
CCNA_R0037 +2.2 5.7 tRNA-Glu compare
CCNA_00031 +2.2 11.0 toxin protein VapC compare
CCNA_00441 +2.2 9.6 chemotaxis receiver domain protein cheYI compare
CCNA_00527 +2.2 11.0 hypothetical protein compare
CCNA_03805 +2.2 13.9 PadR-family transcriptional regulator compare
CCNA_02297 +2.2 7.7 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_01728 +2.2 9.9 short chain dehydrogenase compare
CCNA_01679 +2.2 11.7 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01926 +2.2 9.4 GGDEF diguanylate cyclase DgcB compare
CCNA_01752 +2.2 11.6 YicC-family protein compare
CCNA_01008 +2.2 14.4 urocanate hydratase compare
CCNA_02339 +2.2 11.8 methyltransferase compare
CCNA_00027 +2.2 4.3 2OG-Fe(II) oxygenase compare
CCNA_01193 +2.2 14.8 amylosucrase compare
CCNA_01212 +2.2 11.5 dATP pyrophosphohydrolase compare
CCNA_01541 +2.2 14.0 LysR-family transcriptional regulator compare
CCNA_01655 +2.1 9.6 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00161 +2.1 13.3 hypothetical protein compare
CCNA_03688 +2.1 11.0 AsnC-family transcriptional regulator compare
CCNA_02728 +2.1 9.9 hypothetical protein compare
CCNA_03379 +2.1 3.0 Cro/CI family transcriptional regulator compare
CCNA_01011 +2.1 9.3 imidazolonepropionase compare
CCNA_03129 +2.1 11.6 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02324 +2.1 10.6 heat shock protein 33 hsp33 compare
CCNA_01681 +2.1 7.4 RimI-like acetyltransferase compare
CCNA_01414 +2.1 11.5 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_00931 +2.1 13.6 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_03959 +2.1 1.6 hypothetical protein compare
CCNA_01057 +2.1 11.3 hypothetical protein compare
CCNA_00368 +2.1 10.6 phosphonates transport system permease protein phnE compare
CCNA_02171 +2.1 13.3 nucleoside permease nupC compare
CCNA_00705 +2.1 5.5 hypothetical protein compare
CCNA_01415 +2.1 14.0 methyltransferase compare
CCNA_02805 +2.1 8.3 hypothetical protein compare
CCNA_01751 +2.1 7.0 aminodeoxychorismate lyase compare
CCNA_00675 +2.1 6.6 VapC-like PIN domain ribonuclease compare
CCNA_01533 +2.1 7.3 hypothetical protein compare
CCNA_02250 +2.0 4.1 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_02125 +2.0 14.5 polar development protein podJ compare
CCNA_01790 +2.0 5.2 protein translocase subunit secG compare
CCNA_03089 +2.0 9.8 hypothetical protein compare
CCNA_00400 +2.0 8.3 MarR/EmrR-family transcriptional regulator compare
CCNA_01406 +2.0 8.5 metal-dependent hydrolase compare
CCNA_03214 +2.0 8.1 hypothetical protein compare
CCNA_02073 +2.0 5.3 cupin domain transcriptional regulator compare
CCNA_03964 +2.0 3.9 hypothetical protein compare
CCNA_02289 +2.0 11.3 MarR/EmrR family transcriptional regulator compare
CCNA_03215 +2.0 11.1 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01222 +2.0 6.9 NADH-ubiquinone oxidoreductase compare
CCNA_03936 +2.0 5.6 hypothetical protein compare
CCNA_00803 +2.0 7.2 chemotaxis protein cheW compare
CCNA_02328 +2.0 1.3 cell cycle regulatory protein GcrA compare
CCNA_02475 +2.0 13.6 transcriptional regulator vanR compare
CCNA_00947 +2.0 13.9 flagellar hook protein FlgE compare
CCNA_00944 +2.0 9.0 flagellar hook length determination protein compare
CCNA_00834 +2.0 7.7 flagellin FljM compare
CCNA_03622 +2.0 10.1 beta-lactamase repressor compare
CCNA_02969 +2.0 9.2 TetR-family transcriptional regulator compare
CCNA_01923 +2.0 9.5 ATP-dependent RNA helicase compare
CCNA_R0054 +2.0 3.2 tRNA-Gly compare
CCNA_03893 +2.0 4.3 hypothetical protein compare
CCNA_03391 +1.9 9.8 Cro/CI family transcriptional regulator compare
CCNA_00945 +1.9 9.4 chemotaxis protein MotD compare
CCNA_01619 +1.9 9.4 NYN domain protein compare
CCNA_03740 +1.9 7.2 cysteine synthase compare
CCNA_02760 +1.9 2.9 hypothetical protein compare
CCNA_03832 +1.9 9.0 TetR-family transcriptional regulator compare
CCNA_00769 +1.9 7.8 TetR family transcriptional regulator compare
CCNA_00255 +1.9 3.2 esterase compare
CCNA_01393 +1.9 12.7 soluble lytic murein transglycosylase compare
CCNA_01964 +1.9 5.2 NADH dehydrogenase compare
CCNA_02729 +1.9 13.6 oligopeptide transporter compare
CCNA_02273 +1.9 5.8 glutathione peroxidase compare
CCNA_02330 +1.9 7.2 hypothetical protein compare
CCNA_01020 +1.9 9.0 LacI-family transcriptional regulator compare
CCNA_02732 +1.9 2.8 hypothetical protein compare
CCNA_03108 +1.9 13.6 TonB-dependent outer membrane receptor compare
CCNA_00929 +1.9 12.4 Riboflavin-specific deaminase family protein compare
CCNA_01405 +1.9 6.5 GIY-YIG domain protein compare
CCNA_01678 +1.9 8.7 arginine N-succinyltransferase, beta chain compare
CCNA_00885 +1.9 9.1 MazE-like antitoxin protein compare
CCNA_01242 +1.9 14.7 amino acid permease compare
CCNA_00073 +1.8 14.0 HemY domain membrane protein compare
CCNA_00443 +1.8 8.7 chemotaxis protein cheW compare
CCNA_01217 +1.8 12.2 phosphatidylglycerophosphate synthase compare
CCNA_00072 +1.8 10.2 hypothetical protein compare
CCNA_03938 +1.8 4.7 hypothetical protein compare
CCNA_03498 +1.8 12.4 MarR-family transcriptional regulator compare
CCNA_03372 +1.8 4.7 bacterioferritin-associated ferredoxin compare
CCNA_00992 +1.8 12.3 hypothetical protein compare
CCNA_00438 +1.8 5.5 hypothetical protein compare
CCNA_02036 +1.8 3.3 DNA-binding protein HU compare
CCNA_03420 +1.8 8.8 hypothetical protein compare
CCNA_01680 +1.8 9.4 succinylarginine dihydrolase compare
CCNA_01608 +1.8 7.5 TetR-family transcriptional regulator compare
CCNA_03514 +1.8 8.8 cytochrome c oxidase assembly protein ctaG compare
CCNA_03762 +1.8 4.8 acetolactate synthase-related protein compare
CCNA_02843 +1.8 4.6 toxin protein parE-3 compare
CCNA_01006 +1.8 5.3 flagellar hook-basal body complex protein FliE compare
CCNA_03949 +1.8 7.5 hypothetical protein compare
CCNA_00448 +1.8 9.3 cheU protein compare
CCNA_01412 +1.8 10.2 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_01677 +1.8 7.8 carboxypeptidase G2 precursor compare
CCNA_01690 +1.8 5.6 MAPEG family membrane protein compare
CCNA_00210 +1.8 13.0 TonB-dependent receptor compare
CCNA_01530 +1.8 10.6 flagellin FljJ compare
CCNA_01968 +1.8 4.4 pentapeptide repeats containing protein compare
CCNA_02976 +1.8 7.7 MCP-signal associated domain protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source a-Cyclodextrin in Caulobacter crescentus NA1000

For carbon source a-Cyclodextrin across organisms