Experiment set1IT040 for Burkholderia phytofirmans PsJN

Compare to:

LB with Polymyxin B sulfate 0.0625 mg/ml

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -6.1 -4.7 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14855 -5.8 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06190 -5.1 -6.9 heptosyltransferase compare
BPHYT_RS23840 -4.2 -5.0 methyltransferase compare
BPHYT_RS13245 -3.8 -9.0 hypothetical protein compare
BPHYT_RS01485 -3.8 -2.0 histidine kinase compare
BPHYT_RS02865 -3.6 -4.8 hypothetical protein compare
BPHYT_RS16710 -3.3 -2.4 LysR family transcriptional regulator compare
BPHYT_RS03640 -3.3 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS04385 -3.2 -4.5 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06175 -3.1 -4.3 LPS biosynthesis compare
BPHYT_RS09515 -3.1 -5.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04285 -3.1 -2.6 rhamnosyltransferase compare
BPHYT_RS08850 -3.0 -3.1 transcriptional regulator compare
BPHYT_RS04370 -3.0 -3.2 glycosyl transferase compare
BPHYT_RS17765 -3.0 -7.8 toluene ABC transporter ATP-binding protein compare
BPHYT_RS16245 -3.0 -7.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16840 -2.9 -5.0 transketolase compare
BPHYT_RS03725 -2.8 -2.9 serine hydroxymethyltransferase compare
BPHYT_RS17760 -2.8 -9.9 ABC transporter permease compare
BPHYT_RS16255 -2.8 -7.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04950 -2.6 -17.3 hypothetical protein compare
BPHYT_RS15615 -2.6 -4.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS04945 -2.6 -20.4 membrane protein compare
BPHYT_RS33580 -2.5 -5.8 geranyltranstransferase compare
BPHYT_RS12615 -2.3 -2.3 dihydrodipicolinate synthase compare
BPHYT_RS17745 -2.3 -11.7 toluene tolerance family protein compare
BPHYT_RS03655 -2.3 -2.0 membrane protein compare
BPHYT_RS15415 -2.2 -14.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33840 -2.2 -8.8 amidophosphoribosyltransferase compare
BPHYT_RS04290 -2.2 -3.2 glycosyl transferase family 2 compare
BPHYT_RS17530 -2.1 -7.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS09315 -2.1 -1.5 chemotaxis protein CheY compare
BPHYT_RS33850 -2.1 -2.1 sporulation protein compare
BPHYT_RS17755 -2.0 -5.8 ABC transporter substrate-binding protein compare
BPHYT_RS16065 -1.9 -1.6 LacI family transcriptional regulator compare
BPHYT_RS04940 -1.9 -3.8 hypothetical protein compare
BPHYT_RS36275 -1.9 -2.4 hypothetical protein compare
BPHYT_RS34780 -1.9 -3.9 phytoene synthase compare
BPHYT_RS17520 -1.8 -5.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06405 -1.7 -8.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS03400 -1.7 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS02860 -1.7 -1.6 membrane protein compare
BPHYT_RS34810 -1.7 -5.3 RND transporter compare
BPHYT_RS17640 -1.6 -4.6 2-alkenal reductase compare
BPHYT_RS10065 -1.6 -1.7 cytochrome C oxidase subunit I compare
BPHYT_RS08960 -1.6 -1.9 threonine synthase compare
BPHYT_RS34805 -1.5 -5.3 ABC transporter compare
BPHYT_RS03480 -1.5 -5.1 ferritin compare
BPHYT_RS04965 -1.5 -6.4 ATP-binding protein compare
BPHYT_RS08945 -1.5 -3.1 hypothetical protein compare
BPHYT_RS34815 -1.5 -2.2 ABC transporter compare
BPHYT_RS02965 -1.4 -3.0 membrane protein compare
BPHYT_RS33965 -1.4 -3.0 methylcitrate synthase compare
BPHYT_RS06375 -1.4 -5.1 ribonuclease compare
BPHYT_RS33845 -1.4 -3.0 bacteriocin production protein compare
BPHYT_RS21905 -1.4 -1.4 IclR family transcriptional regulator compare
BPHYT_RS09385 -1.4 -1.4 FAD-dependent oxidoreductase compare
BPHYT_RS12465 -1.4 -3.1 inositol monophosphatase compare
BPHYT_RS17405 -1.3 -1.5 indole-3-glycerol phosphate synthase compare
BPHYT_RS14060 -1.3 -2.2 peptidase M23 compare
BPHYT_RS17100 -1.3 -6.4 RNA pyrophosphohydrolase compare
BPHYT_RS33150 -1.3 -1.3 beta-lactamase compare
BPHYT_RS26730 -1.3 -5.4 membrane protein compare
BPHYT_RS19335 -1.3 -4.1 hypothetical protein compare
BPHYT_RS15075 -1.2 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS16835 -1.2 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS02610 -1.2 -5.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS22835 -1.2 -1.6 flagellar motor protein MotA compare
BPHYT_RS06195 -1.2 -2.4 membrane protein compare
BPHYT_RS28830 -1.2 -1.3 LysR family transcriptional regulator compare
BPHYT_RS05620 -1.2 -1.6 CsbD family protein compare
BPHYT_RS09500 -1.2 -3.8 glucose-6-phosphate isomerase compare
BPHYT_RS09330 -1.2 -8.0 phytoene synthase compare
BPHYT_RS16215 -1.2 -4.0 sensor histidine kinase compare
BPHYT_RS02595 -1.2 -1.8 sulfurtransferase compare
BPHYT_RS18420 -1.2 -3.0 hypothetical protein compare
BPHYT_RS20665 -1.1 -1.1 LysR family transcriptional regulator compare
BPHYT_RS33920 -1.1 -5.7 type II citrate synthase compare
BPHYT_RS36220 -1.1 -1.3 hypothetical protein compare
BPHYT_RS29065 -1.1 -2.6 hypothetical protein compare
BPHYT_RS29750 -1.1 -2.9 phosphoenolpyruvate phosphomutase compare
BPHYT_RS14845 -1.1 -3.1 cysteine synthase compare
BPHYT_RS06075 -1.1 -6.0 hypothetical protein compare
BPHYT_RS27580 -1.1 -1.1 F0F1 ATP synthase subunit alpha compare
BPHYT_RS02590 -1.1 -5.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02285 -1.1 -4.0 cell division protein compare
BPHYT_RS35215 -1.1 -1.1 dehydrogenase compare
BPHYT_RS21335 -1.1 -2.0 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS26775 -1.1 -1.6 chemotaxis protein CheB compare
BPHYT_RS03175 -1.0 -4.8 sterol-binding protein compare
BPHYT_RS15620 -1.0 -4.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS10005 -1.0 -1.8 hypothetical protein compare
BPHYT_RS11685 -1.0 -1.3 phasin family protein compare
BPHYT_RS10095 -1.0 -2.5 integrase compare
BPHYT_RS02540 -1.0 -1.7 hypothetical protein compare
BPHYT_RS24315 -1.0 -1.2 phosphoribosyltransferase compare
BPHYT_RS30795 -1.0 -1.1 short-chain dehydrogenase compare
BPHYT_RS00770 -1.0 -1.2 conjugal transfer protein TraC compare
BPHYT_RS18760 -1.0 -3.1 flagellar biosynthesis protein FliT compare
BPHYT_RS02365 -1.0 -1.2 hypothetical protein compare
BPHYT_RS12725 -1.0 -6.7 regulator compare
BPHYT_RS30140 -1.0 -1.3 3-methylitaconate isomerase compare
BPHYT_RS17525 -1.0 -1.6 glutaredoxin compare
BPHYT_RS04675 -1.0 -3.5 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS16675 -1.0 -2.1 dihydroorotase compare
BPHYT_RS09650 -1.0 -2.0 hypothetical protein compare
BPHYT_RS12055 -1.0 -7.8 phosphoenolpyruvate synthase compare
BPHYT_RS17035 -0.9 -2.1 sugar kinase compare
BPHYT_RS24965 -0.9 -1.4 hypothetical protein compare
BPHYT_RS01095 -0.9 -1.2 hypothetical protein compare
BPHYT_RS07145 -0.9 -1.6 DNA-binding protein compare
BPHYT_RS19115 -0.9 -2.7 acyl carrier protein compare
BPHYT_RS04340 -0.9 -2.9 hypothetical protein compare
BPHYT_RS21350 -0.9 -1.9 ADP-glucose pyrophosphorylase compare
BPHYT_RS29745 -0.9 -2.1 phosphonopyruvate decarboxylase compare
BPHYT_RS20840 -0.9 -1.9 beta-lactamase compare
BPHYT_RS01630 -0.9 -1.7 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS11705 -0.9 -1.4 hypothetical protein compare
BPHYT_RS06685 -0.9 -2.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS33030 -0.9 -1.1 hypothetical protein compare
BPHYT_RS21330 -0.9 -1.6 hypothetical protein compare
BPHYT_RS22360 -0.8 -2.0 response regulator receiver compare
BPHYT_RS27330 -0.8 -1.2 hypothetical protein compare
BPHYT_RS09480 -0.8 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS07050 -0.8 -1.3 membrane protein compare
BPHYT_RS21340 -0.8 -2.4 2OG-Fe(II) oxygenase compare
BPHYT_RS22295 -0.8 -1.1 LysR family transcriptional regulator compare
BPHYT_RS17890 -0.8 -1.7 shikimate kinase compare
BPHYT_RS13605 -0.8 -0.8 tRNA-Pro compare
BPHYT_RS13885 -0.8 -1.4 myo-inositol 2-dehydrogenase compare
BPHYT_RS06410 -0.8 -2.9 transcriptional regulator compare
BPHYT_RS16270 -0.8 -3.0 phosphoglycerate kinase compare
BPHYT_RS11635 -0.8 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS21505 -0.8 -1.3 amidohydrolase compare
BPHYT_RS08365 -0.8 -2.9 3-oxoacyl-ACP reductase compare
BPHYT_RS16445 -0.8 -1.9 RNA helicase compare
BPHYT_RS26820 -0.8 -1.0 LysR family transcriptional regulator compare
BPHYT_RS12990 -0.7 -2.2 iron transporter compare
BPHYT_RS04335 -0.7 -1.3 membrane protein compare
BPHYT_RS11400 -0.7 -1.9 hypothetical protein compare
BPHYT_RS34975 -0.7 -1.0 L-aspartate dehydrogenase compare
BPHYT_RS08565 -0.7 -0.9 dihydroorotate dehydrogenase compare
BPHYT_RS06610 -0.7 -1.3 triosephosphate isomerase compare
BPHYT_RS32470 -0.7 -1.3 membrane protein compare
BPHYT_RS06975 -0.7 -1.0 glutamate racemase compare
BPHYT_RS12815 -0.7 -3.4 IclR family transcriptional regulator compare
BPHYT_RS09105 -0.7 -3.2 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS23740 -0.7 -3.7 AraC family transcriptional regulator compare
BPHYT_RS07265 -0.7 -2.1 3-hydroxyanthranilate 3,4-dioxygenase compare
BPHYT_RS17075 -0.7 -2.8 ABC transporter permease compare
BPHYT_RS20935 -0.7 -1.8 dehydrogenase compare
BPHYT_RS29740 -0.7 -2.7 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS01625 -0.7 -2.3 chemotaxis protein CheY compare
BPHYT_RS34430 -0.7 -0.8 2-keto-4-pentenoate hydratase compare
BPHYT_RS01240 -0.7 -1.2 hypothetical protein compare
BPHYT_RS14135 -0.7 -3.4 phosphate transporter permease subunit PtsA compare
BPHYT_RS14840 -0.7 -3.6 lytic transglycosylase compare
BPHYT_RS06530 -0.7 -1.3 membrane protein compare
BPHYT_RS16340 -0.7 -3.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS09280 -0.7 -0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS02725 -0.7 -1.2 GntR family transcriptional regulator compare
BPHYT_RS11335 -0.7 -1.6 hypothetical protein compare
BPHYT_RS16975 -0.7 -2.5 shikimate 5-dehydrogenase compare
BPHYT_RS01235 -0.7 -1.0 hypothetical protein compare
BPHYT_RS10340 -0.7 -2.3 sensor protein Chase2 compare
BPHYT_RS11245 -0.7 -1.7 ATPase compare
BPHYT_RS07570 -0.7 -1.0 hypothetical protein compare
BPHYT_RS23170 -0.7 -2.1 XRE family transcriptional regulator compare
BPHYT_RS26490 -0.7 -0.9 hypothetical protein compare
BPHYT_RS27865 -0.7 -1.6 ATPase compare
BPHYT_RS16420 -0.7 -2.9 copper resistance protein CopD compare
BPHYT_RS01045 -0.7 -3.4 hypothetical protein compare
BPHYT_RS17975 -0.7 -2.4 cytochrome C biogenesis protein compare
BPHYT_RS02885 -0.6 -3.3 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS26685 -0.6 -0.6 precorrin-8X methylmutase compare
BPHYT_RS17885 -0.6 -2.9 3-dehydroquinate synthase compare
BPHYT_RS31685 -0.6 -1.9 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS24550 -0.6 -1.9 hypothetical protein compare
BPHYT_RS35495 -0.6 -1.4 nucleotide pyrophosphohydrolase compare
BPHYT_RS08360 -0.6 -1.6 LysR family transcriptional regulator compare
BPHYT_RS26185 -0.6 -1.0 thioesterase compare
BPHYT_RS09545 -0.6 -1.1 peptide methionine sulfoxide reductase compare
BPHYT_RS01955 -0.6 -2.9 hypothetical protein compare
BPHYT_RS05910 -0.6 -2.8 hypothetical protein compare
BPHYT_RS34675 -0.6 -2.3 DNA-binding protein compare
BPHYT_RS03220 -0.6 -3.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
BPHYT_RS21940 -0.6 -1.4 hemolysin D compare
BPHYT_RS00225 -0.6 -1.6 hypothetical protein compare
BPHYT_RS09980 -0.6 -1.1 TetR family transcriptional regulator compare
BPHYT_RS14505 -0.6 -1.7 membrane protein compare
BPHYT_RS22190 -0.6 -1.7 nucleoid-structuring protein H-NS compare
BPHYT_RS26340 -0.6 -2.7 cupin compare
BPHYT_RS18610 -0.6 -2.3 lytic transglycosylase compare
BPHYT_RS04955 -0.6 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS21035 -0.6 -1.9 ABC transporter permease compare
BPHYT_RS27270 -0.6 -1.3 photosystem reaction center subunit H compare
BPHYT_RS35835 -0.6 -2.3 hypothetical protein compare
BPHYT_RS31855 -0.6 -1.6 FAD-linked oxidase compare
BPHYT_RS14605 -0.6 -2.0 sodium transporter compare


Specific Phenotypes

For 1 genes in this experiment

For stress Polymyxin B sulfate in Burkholderia phytofirmans PsJN

For stress Polymyxin B sulfate across organisms