Experiment set1IT039 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB with Cobalt chloride hexahydrate 0.08 mM

200 most important genes:

  gene name fitness t score description  
AO356_08880 -4.3 -4.2 glycosyl transferase compare
AO356_18010 -3.9 -9.3 hypothetical protein compare
AO356_17515 -3.9 -12.7 murein transglycosylase compare
AO356_14335 -3.8 -4.4 rRNA methyltransferase compare
AO356_14295 -3.8 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_03355 -3.5 -4.2 hypothetical protein compare
AO356_03360 -3.2 -2.2 hypothetical protein compare
AO356_03405 -3.2 -4.3 serine acetyltransferase compare
AO356_08905 -3.1 -2.1 glycosyl transferase compare
AO356_03415 -3.1 -8.6 oxidoreductase compare
AO356_18020 -3.0 -4.1 ATP-dependent DNA helicase RuvA compare
AO356_03365 -2.9 -3.9 UDP-N-acetylglucosamine 2-epimerase compare
AO356_24385 -2.9 -9.9 serine/threonine protein kinase conserved
AO356_03420 -2.8 -8.3 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_13475 -2.7 -6.7 glutathione synthetase compare
AO356_22795 -2.7 -1.8 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_08870 -2.7 -8.7 polymerase compare
AO356_16260 -2.7 -7.2 ribosomal-protein-alanine acetyltransferase compare
AO356_03380 -2.6 -5.8 glycosyl amidation-associated protein WbuZ compare
AO356_04055 -2.5 -1.4 hypothetical protein compare
AO356_08930 -2.5 -3.3 heptose kinase compare
AO356_03400 -2.4 -6.4 aminotransferase DegT compare
AO356_03345 -2.4 -8.7 hypothetical protein compare
AO356_19050 -2.4 -3.1 cysteine synthase compare
AO356_03350 -2.3 -7.3 glycosyl transferase compare
AO356_15165 -2.3 -3.0 protein cII compare
AO356_08890 -2.3 -8.6 glycosyltransferase compare
AO356_12380 -2.2 -6.8 ATP-dependent DNA helicase RecG compare
AO356_11585 -2.1 -4.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_10185 -2.1 -7.4 glutamate--cysteine ligase compare
AO356_08895 -2.1 -1.4 GlcNAc-PI de-N-acetylase compare
AO356_18025 -2.1 -2.7 ATP-dependent DNA helicase RuvB compare
AO356_07915 -2.0 -3.0 exodeoxyribonuclease V subunit beta compare
AO356_01755 -2.0 -3.6 trigger factor compare
AO356_19420 -1.9 -1.3 septum formation inhibitor compare
AO356_07005 -1.9 -2.6 ABC transporter ATP-binding protein compare
AO356_03385 -1.9 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_24645 -1.9 -5.9 hypothetical protein compare
AO356_02315 -1.8 -4.4 DNA topoisomerase I compare
AO356_08670 -1.8 -2.4 N-acetylmuramoyl-L-alanine amidase compare
AO356_24640 -1.8 -7.0 protein BatD compare
AO356_12475 -1.8 -8.7 reactive intermediate/imine deaminase compare
AO356_11610 -1.7 -2.0 glycerol acyltransferase compare
AO356_20475 -1.7 -1.8 hypothetical protein compare
AO356_08985 -1.7 -1.4 hypothetical protein compare
AO356_08590 -1.7 -7.0 hypothetical protein compare
AO356_07385 -1.7 -1.6 tRNA-Thr compare
AO356_03425 -1.7 -7.6 chain-length determining protein compare
AO356_08585 -1.6 -3.7 50S ribosomal protein L9 compare
AO356_17345 -1.6 -3.0 molybdenum cofactor biosynthesis protein MoaE compare
AO356_12660 -1.5 -5.2 diguanylate cyclase compare
AO356_09300 -1.5 -1.5 type II secretory protein PulM compare
AO356_19425 -1.5 -1.6 lipid A biosynthesis lauroyl acyltransferase compare
AO356_24665 -1.5 -6.0 AAA family ATPase compare
AO356_12780 -1.5 -5.3 argininosuccinate lyase compare
AO356_04560 -1.4 -2.4 serine peptidase compare
AO356_10245 -1.4 -3.5 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA compare
AO356_22095 -1.4 -4.6 cupin compare
AO356_01875 -1.4 -1.3 Cro/Cl family transcriptional regulator compare
AO356_11430 -1.4 -7.5 N-acetylmuramoyl-L-alanine amidase compare
AO356_08300 -1.4 -3.7 cobalt-precorrin-6X reductase compare
AO356_02785 -1.4 -3.9 uroporphyrin-III methyltransferase compare
AO356_29125 -1.4 -1.7 vanillate monooxygenase compare
AO356_12620 -1.4 -7.3 amino acid dehydrogenase compare
AO356_12725 -1.3 -3.5 recombinase XerC compare
AO356_00575 -1.3 -2.4 SCP-2 family sterol carrier protein compare
AO356_24485 -1.3 -2.7 SAM-dependent methyltransferase compare
AO356_03995 -1.3 -8.2 potassium transporter TrkH compare
AO356_03375 -1.3 -1.2 ExsB family protein compare
AO356_15320 -1.3 -5.7 lytic transglycosylase compare
AO356_03305 -1.3 -2.2 ATPase compare
AO356_07910 -1.3 -1.4 exodeoxyribonuclease V subunit alpha compare
AO356_04280 -1.3 -8.7 ATP-dependent RNA helicase HrpA conserved
AO356_10485 -1.3 -1.6 hypothetical protein compare
AO356_11025 -1.3 -4.2 transcriptional regulator PhoU compare
AO356_07495 -1.3 -2.9 molecular chaperone DnaJ compare
AO356_13320 -1.3 -3.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_13345 -1.3 -2.0 cell division ATP-binding protein FtsE compare
AO356_01095 -1.2 -3.5 glycolate oxidase compare
AO356_08215 -1.2 -3.7 tRNA-dihydrouridine synthase B compare
AO356_08275 -1.2 -3.3 precorrin isomerase compare
AO356_08975 -1.2 -6.8 diguanylate cyclase compare
AO356_07055 -1.2 -2.3 phosphocarrier protein HPr compare
AO356_24655 -1.2 -2.7 hypothetical protein compare
AO356_12895 -1.2 -9.7 polyphosphate kinase compare
AO356_10240 -1.2 -8.7 amino acid ABC transporter permease compare
AO356_24650 -1.2 -4.4 BatB protein compare
AO356_05010 -1.2 -6.5 diguanylate cyclase compare
AO356_18245 -1.2 -3.3 DeoR family transcriptional regulator compare
AO356_02135 -1.1 -3.3 hypothetical protein compare
AO356_25750 -1.1 -2.0 GntR family transcriptional regulator compare
AO356_15325 -1.1 -2.3 hypothetical protein compare
AO356_11270 -1.1 -5.7 potassium transporter peripheral membrane component compare
AO356_16505 -1.1 -2.5 molybdopterin-synthase adenylyltransferase compare
AO356_17090 -1.1 -3.9 phospholipid-binding protein compare
AO356_16450 -1.1 -2.8 GTP-binding protein compare
AO356_13350 -1.1 -8.4 cell division protein FtsX compare
AO356_02250 -1.1 -5.0 pyridine nucleotide-disulfide oxidoreductase compare
AO356_13965 -1.1 -2.3 hypothetical protein compare
AO356_21560 -1.1 -2.7 hypothetical protein compare
AO356_20185 -1.1 -5.2 aminodeoxychorismate lyase compare
AO356_12625 -1.1 -1.6 cytochrome C2 compare
AO356_24550 -1.1 -1.5 hypothetical protein compare
AO356_08610 -1.1 -4.5 exoribonuclease R compare
AO356_10585 -1.0 -6.6 hypothetical protein compare
AO356_27995 -1.0 -1.7 thioredoxin reductase compare
AO356_05885 -1.0 -6.1 RNA polymerase sigma factor RpoS compare
AO356_30375 -1.0 -1.6 hypothetical protein compare
AO356_02530 -1.0 -4.8 hypothetical protein compare
AO356_14130 -1.0 -1.4 amidophosphoribosyltransferase compare
AO356_05900 -1.0 -2.8 stationary phase survival protein SurE compare
AO356_02440 -1.0 -5.2 cytochrome C oxidase Cbb3 compare
AO356_14505 -1.0 -1.5 peptidase M23 compare
AO356_08925 -0.9 -3.6 lipopolysaccharide kinase compare
AO356_15200 -0.9 -5.1 hypothetical protein compare
AO356_25565 -0.9 -2.2 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
AO356_22675 -0.9 -1.2 sulfate transporter compare
AO356_01915 -0.9 -2.0 hypothetical protein compare
AO356_19145 -0.9 -2.0 5,6-dimethylbenzimidazole synthase compare
AO356_18060 -0.9 -4.2 hypothetical protein compare
AO356_18805 -0.9 -1.0 magnesium transporter compare
AO356_03715 -0.9 -4.6 chemotaxis protein CheA compare
AO356_20175 -0.9 -0.9 3-oxoacyl-ACP synthase compare
AO356_19210 -0.9 -2.2 hypothetical protein compare
AO356_17485 -0.9 -3.0 elongation factor 4 compare
AO356_14450 -0.9 -4.2 cyclic AMP receptor protein compare
AO356_22330 -0.9 -2.2 hypothetical protein compare
AO356_00545 -0.9 -4.9 methionine synthase compare
AO356_00525 -0.8 -2.0 cobalamin biosynthesis protein CobE compare
AO356_27280 -0.8 -1.4 XRE family transcriptional regulator compare
AO356_00975 -0.8 -1.8 hypothetical protein compare
AO356_26475 -0.8 -1.8 lactoylglutathione lyase compare
AO356_06385 -0.8 -2.1 recombinase XerD compare
AO356_20125 -0.8 -3.9 23S rRNA pseudouridylate synthase compare
AO356_03800 -0.8 -1.2 histidine kinase compare
AO356_17035 -0.8 -2.9 ATPase compare
AO356_26895 -0.8 -2.0 2Fe-2S ferredoxin compare
AO356_19555 -0.8 -3.0 hypothetical protein compare
AO356_00270 -0.8 -2.0 hypothetical protein compare
AO356_26645 -0.8 -1.9 crotonase compare
AO356_19175 -0.8 -2.3 alpha-ribazole phosphatase compare
AO356_26350 -0.8 -1.7 acetyl-CoA acetyltransferase compare
AO356_21835 -0.8 -1.5 glyoxalase compare
AO356_08180 -0.8 -1.9 chemotaxis protein compare
AO356_21510 -0.8 -2.3 addiction module toxin RelE compare
AO356_10235 -0.8 -4.9 cystine transporter subunit compare
AO356_02425 -0.8 -4.5 cytochrome C oxidase Cbb3 compare
AO356_16155 -0.8 -3.1 hypothetical protein compare
AO356_22665 -0.8 -1.7 chemotaxis protein compare
AO356_29525 -0.8 -2.0 transcriptional regulator compare
AO356_05670 -0.8 -1.6 recombinase RecA compare
AO356_28200 -0.8 -4.1 macrolide transporter compare
AO356_27610 -0.8 -2.7 RND transporter compare
AO356_28915 -0.8 -3.1 NmrA family transcriptional regulator compare
AO356_13595 -0.8 -4.2 amino acid ABC transporter substrate-binding protein compare
AO356_11120 -0.8 -5.2 oligopeptidase A compare
AO356_26975 -0.7 -2.7 hypothetical protein compare
AO356_08290 -0.7 -1.4 precorrin-6Y C5,15-methyltransferase compare
AO356_16875 -0.7 -5.3 GntR family transcriptional regulator compare
AO356_17735 -0.7 -3.7 XRE family transcriptional regulator compare
AO356_13485 -0.7 -1.0 chemotaxis protein CheY compare
AO356_19180 -0.7 -2.0 cobalamin synthase compare
AO356_27400 -0.7 -1.7 1,2-oxophytodienoate reductase compare
AO356_00505 -0.7 -4.3 cobalamin biosynthesis protein CobN compare
AO356_09040 -0.7 -3.3 potassium:proton antiporter compare
AO356_19135 -0.7 -2.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_23980 -0.7 -1.5 HIT family hydrolase compare
AO356_19810 -0.7 -2.2 esterase compare
AO356_04885 -0.7 -3.2 multidrug transporter compare
AO356_16570 -0.7 -2.4 hypoxanthine-guanine phosphoribosyltransferase compare
AO356_29650 -0.7 -2.5 amino acid ABC transporter permease compare
AO356_28835 -0.7 -2.2 ABC transporter substrate-binding protein compare
AO356_10350 -0.7 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
AO356_09200 -0.7 -3.1 methyltransferase compare
AO356_22800 -0.7 -3.5 glutathione reductase compare
AO356_16610 -0.7 -4.0 hypothetical protein compare
AO356_19265 -0.7 -2.4 recombination-associated protein RdgC compare
AO356_21260 -0.7 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_13645 -0.7 -5.0 transglycosylase compare
AO356_24540 -0.7 -2.7 serine/threonine protein phosphatase compare
AO356_27360 -0.7 -1.9 nitrile hydratase subunit alpha compare
AO356_16550 -0.7 -4.0 NAD-dependent dehydratase compare
AO356_21095 -0.7 -1.0 thioesterase compare
AO356_19390 -0.7 -1.6 hypothetical protein compare
AO356_06775 -0.6 -1.5 hypothetical protein compare
AO356_11315 -0.6 -0.9 shikimate dehydrogenase compare
AO356_00380 -0.6 -2.3 alpha/beta hydrolase compare
AO356_22565 -0.6 -1.5 hypothetical protein compare
AO356_11275 -0.6 -3.5 16S rRNA methyltransferase compare
AO356_29645 -0.6 -2.7 glutamine ABC transporter ATP-binding protein compare
AO356_07105 -0.6 -2.9 hypothetical protein compare
AO356_05805 -0.6 -1.6 phage tail protein compare
AO356_19745 -0.6 -3.9 heat-shock protein Hsp90 compare
AO356_24355 -0.6 -2.6 type VI secretion protein compare
AO356_17770 -0.6 -0.9 hypothetical protein compare
AO356_14455 -0.6 -2.9 peroxiredoxin compare
AO356_28505 -0.6 -1.7 sugar ABC transporter substrate-binding protein compare
AO356_09835 -0.6 -2.2 iron transporter compare
AO356_09335 -0.6 -2.4 type II secretion system protein GspF compare
AO356_05835 -0.6 -2.9 baseplate J protein compare


Specific Phenotypes

For 16 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2C3

For stress Cobalt chloride hexahydrate across organisms