Experiment set1IT039 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS13910 -6.8 -4.7 glutamate racemase compare
RR42_RS14365 -6.5 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS05860 -5.9 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS19005 -5.5 -5.3 3-dehydroquinate synthase compare
RR42_RS11270 -5.2 -10.0 aconitate hydratase compare
RR42_RS06485 -5.1 -8.4 chorismate synthase compare
RR42_RS16255 -5.0 -9.6 sulfate adenylyltransferase compare
RR42_RS18305 -5.0 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS01385 -4.9 -4.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS30655 -4.8 -8.0 LysR family transcriptional regulator compare
RR42_RS16250 -4.8 -8.0 sulfate adenylyltransferase compare
RR42_RS18300 -4.8 -6.5 anthranilate synthase subunit II compare
RR42_RS04475 -4.5 -11.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS30660 -4.4 -10.9 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18855 -4.3 -3.0 preprotein translocase compare
RR42_RS33355 -4.2 -5.0 membrane protein compare
RR42_RS01160 -4.1 -9.6 homoserine O-acetyltransferase compare
RR42_RS18295 -4.1 -14.0 anthranilate synthase component I compare
RR42_RS17645 -4.0 -6.1 shikimate dehydrogenase compare
RR42_RS01845 -4.0 -2.6 glycerol-3-phosphate dehydrogenase compare
RR42_RS05990 -4.0 -9.4 aromatic amino acid aminotransferase compare
RR42_RS11260 -4.0 -7.9 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS11275 -4.0 -5.4 3-methylitaconate isomerase compare
RR42_RS11255 -3.8 -9.2 Fis family transcriptional regulator compare
RR42_RS02705 -3.6 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS14400 -3.6 -5.8 isopropylmalate isomerase compare
RR42_RS14385 -3.5 -5.2 3-isopropylmalate dehydrogenase compare
RR42_RS21665 -3.4 -8.5 cobalt transporter compare
RR42_RS14320 -3.4 -5.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS14390 -3.3 -4.2 3-isopropylmalate dehydratase compare
RR42_RS14360 -3.3 -2.0 tryptophan synthase subunit alpha compare
RR42_RS07365 -3.3 -4.3 pyruvate dehydrogenase compare
RR42_RS16265 -3.3 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS18990 -3.3 -16.7 glutamate synthase compare
RR42_RS04700 -3.2 -2.0 ribonuclease G compare
RR42_RS02810 -3.1 -3.6 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS16240 -3.0 -1.9 cobalamin biosynthesis protein CbiX compare
RR42_RS11795 -3.0 -3.5 PEP synthetase regulatory protein compare
RR42_RS20205 -3.0 -4.4 chromosome partitioning protein compare
RR42_RS11790 -3.0 -7.3 phosphoenolpyruvate synthase compare
RR42_RS02085 -3.0 -6.1 RNA polymerase subunit sigma-54 compare
RR42_RS16245 -2.9 -6.9 uroporphyrin-III methyltransferase compare
RR42_RS01290 -2.9 -6.1 thiamine biosynthesis protein ThiC compare
RR42_RS16275 -2.9 -5.0 membrane protein compare
RR42_RS18985 -2.9 -5.9 glutamate synthase compare
RR42_RS19010 -2.8 -6.9 shikimate kinase compare
RR42_RS12050 -2.8 -5.5 DNA polymerase compare
RR42_RS33255 -2.7 -4.6 protein-tyrosine phosphatase compare
RR42_RS16270 -2.6 -8.3 sulfite reductase compare
RR42_RS04460 -2.5 -4.9 chorismate mutase compare
RR42_RS04470 -2.5 -5.8 prephenate dehydrogenase compare
RR42_RS14080 -2.5 -10.4 RNA polymerase sigma factor RpoE compare
RR42_RS00940 -2.4 -7.1 biotin synthase compare
RR42_RS33260 -2.4 -7.5 multidrug MFS transporter compare
RR42_RS12925 -2.3 -2.9 ATPase compare
RR42_RS16260 -2.3 -1.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS23515 -2.3 -4.5 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS00925 -2.2 -11.2 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS11770 -2.1 -2.3 cyclase compare
RR42_RS01920 -2.0 -3.5 protoheme IX farnesyltransferase compare
RR42_RS16280 -1.9 -6.0 transcriptional regulator compare
RR42_RS04535 -1.9 -5.5 cysteine synthase compare
RR42_RS01780 -1.9 -6.7 glutathione synthetase compare
RR42_RS06020 -1.9 -1.6 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS09580 -1.9 -1.6 hypothetical protein compare
RR42_RS25655 -1.8 -10.6 pyruvate carboxylase compare
RR42_RS13905 -1.8 -3.8 fumarate hydratase compare
RR42_RS15415 -1.8 -3.4 membrane protein compare
RR42_RS01775 -1.8 -6.3 glutamate--cysteine ligase compare
RR42_RS06630 -1.8 -2.1 integration host factor subunit alpha compare
RR42_RS31530 -1.7 -3.3 histidine kinase compare
RR42_RS15525 -1.7 -1.6 hypothetical protein compare
RR42_RS15410 -1.7 -4.1 membrane protein compare
RR42_RS05955 -1.7 -1.4 hypothetical protein compare
RR42_RS33250 -1.7 -4.7 tyrosine protein kinase compare
RR42_RS07605 -1.6 -5.0 poly-beta-hydroxybutyrate polymerase compare
RR42_RS15035 -1.6 -4.4 ZIP zinc transporter compare
RR42_RS33235 -1.6 -8.5 GDP-mannose 4,6-dehydratase compare
RR42_RS22250 -1.6 -2.2 hypothetical protein compare
RR42_RS28885 -1.6 -5.3 membrane protein compare
RR42_RS15890 -1.5 -6.3 heme biosynthesis protein HemY compare
RR42_RS33240 -1.5 -10.1 GDP-L-fucose synthase compare
RR42_RS15970 -1.5 -1.8 lipoprotein compare
RR42_RS22590 -1.5 -1.1 organic hydroperoxide resistance protein compare
RR42_RS05420 -1.4 -3.9 membrane protein compare
RR42_RS14790 -1.4 -7.1 cobalamin biosynthesis protein CobD compare
RR42_RS09015 -1.4 -2.9 trigger factor compare
RR42_RS17105 -1.4 -8.1 Clp protease ClpX compare
RR42_RS32740 -1.4 -1.3 enoyl-CoA hydratase compare
RR42_RS18385 -1.4 -3.0 hypothetical protein compare
RR42_RS04180 -1.4 -2.1 methyltransferase compare
RR42_RS00420 -1.4 -3.1 hypothetical protein compare
RR42_RS08945 -1.3 -1.3 hypothetical protein compare
RR42_RS15735 -1.3 -6.2 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS06095 -1.3 -3.7 hypothetical protein compare
RR42_RS28315 -1.3 -3.0 GntR family transcriptional regulator compare
RR42_RS29865 -1.3 -2.6 hypothetical protein compare
RR42_RS15895 -1.3 -4.5 uroporphyrinogen III methyltransferase compare
RR42_RS17390 -1.3 -4.6 ATP-dependent DNA helicase RecG compare
RR42_RS15905 -1.3 -7.1 phosphoenolpyruvate carboxylase compare
RR42_RS10135 -1.3 -7.3 biofilm PGA synthesis protein PgaC compare
RR42_RS15455 -1.3 -5.0 membrane protein compare
RR42_RS10140 -1.3 -7.2 8-amino-7-oxononanoate synthase compare
RR42_RS26590 -1.3 -1.7 hypothetical protein compare
RR42_RS00930 -1.2 -5.7 8-amino-7-oxononanoate synthase compare
RR42_RS06860 -1.2 -1.6 hypothetical protein compare
RR42_RS07130 -1.2 -2.4 hypothetical protein compare
RR42_RS26220 -1.2 -2.4 citrate lyase subunit beta compare
RR42_RS13305 -1.2 -1.6 hypothetical protein compare
RR42_RS36400 -1.2 -1.2 hypothetical protein compare
RR42_RS24930 -1.2 -1.1 AraC family transcriptional regulator compare
RR42_RS01380 -1.2 -1.0 membrane protein compare
RR42_RS04320 -1.1 -3.4 cell division protein FtsK compare
RR42_RS05165 -1.1 -2.0 GntR family transcriptional regulator compare
RR42_RS13025 -1.1 -3.8 hypothetical protein compare
RR42_RS18670 -1.1 -4.2 metal-dependent hydrolase compare
RR42_RS33245 -1.1 -5.3 mannose-1-phosphate guanyltransferase compare
RR42_RS12015 -1.1 -2.0 dihydrolipoamide acyltransferase compare
RR42_RS25510 -1.1 -1.9 short-chain dehydrogenase compare
RR42_RS26555 -1.1 -1.5 tRNA-Met compare
RR42_RS01040 -1.1 -6.6 cobalamin biosynthesis protein CobW compare
RR42_RS18840 -1.1 -3.8 2-alkenal reductase compare
RR42_RS23205 -1.1 -1.1 hypothetical protein compare
RR42_RS18850 -1.1 -2.0 preprotein translocase subunit TatC compare
RR42_RS07380 -1.1 -3.2 dihydrolipoamide dehydrogenase compare
RR42_RS15475 -1.1 -3.8 protein tolQ compare
RR42_RS24665 -1.1 -1.8 hypothetical protein compare
RR42_RS15470 -1.1 -1.0 biopolymer transporter ExbD compare
RR42_RS27120 -1.1 -1.5 amino acid ABC transporter permease compare
RR42_RS15460 -1.1 -3.9 translocation protein TolB compare
RR42_RS26740 -1.1 -1.8 protein serine/threonine phosphatase compare
RR42_RS15785 -1.0 -4.0 glycosyl transferase family 28 compare
RR42_RS17865 -1.0 -5.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS08865 -1.0 -2.6 hydroxylase compare
RR42_RS30640 -1.0 -3.7 DNA mismatch repair protein MutT compare
RR42_RS23140 -1.0 -0.9 peptidylprolyl isomerase compare
RR42_RS21690 -1.0 -0.9 acetyltransferase compare
RR42_RS20360 -1.0 -1.4 AsnC family transcriptional regulator compare
RR42_RS01795 -1.0 -6.8 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS35895 -1.0 -3.0 PadR family transcriptional regulator compare
RR42_RS32085 -1.0 -1.2 hypothetical protein compare
RR42_RS07940 -1.0 -2.1 ABC transporter permease compare
RR42_RS11065 -0.9 -2.6 phenylacetic acid degradation protein compare
RR42_RS33210 -0.9 -2.9 teichoic acid biosynthesis protein compare
RR42_RS13515 -0.9 -3.0 membrane protein compare
RR42_RS21220 -0.9 -1.7 iron transporter FeoB compare
RR42_RS08365 -0.9 -4.0 hypothetical protein compare
RR42_RS08350 -0.9 -2.0 hypothetical protein compare
RR42_RS24605 -0.9 -4.4 TetR family transcriptional regulator compare
RR42_RS13935 -0.9 -2.0 hemin transporter compare
RR42_RS33815 -0.9 -0.8 isochorismatase compare
RR42_RS19885 -0.9 -1.2 aminoglycoside transporter compare
RR42_RS22570 -0.9 -1.9 SAM-dependent methyltransferase compare
RR42_RS27215 -0.9 -2.5 LysR family transcriptional regulator compare
RR42_RS21435 -0.9 -2.3 hypothetical protein compare
RR42_RS07565 -0.9 -3.9 transcription accessory protein compare
RR42_RS02555 -0.9 -1.8 transcriptional regulator compare
RR42_RS02420 -0.9 -0.8 SAM-dependent methyltransferase compare
RR42_RS08210 -0.9 -0.9 hypothetical protein compare
RR42_RS05665 -0.9 -0.8 urease accessory protein UreJ compare
RR42_RS02310 -0.9 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS32670 -0.9 -1.0 phenol hydroxylase compare
RR42_RS17050 -0.9 -3.8 phosphoribosylglycinamide formyltransferase compare
RR42_RS24040 -0.9 -2.3 hypothetical protein compare
RR42_RS15425 -0.9 -3.6 membrane protein compare
RR42_RS15720 -0.9 -4.1 hypothetical protein compare
RR42_RS14075 -0.9 -3.7 anti-sigma factor compare
RR42_RS34650 -0.9 -3.0 LacI family transcriptional regulator compare
RR42_RS14405 -0.8 -1.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS18380 -0.8 -1.8 hypothetical protein compare
RR42_RS10150 -0.8 -1.6 hypothetical protein compare
RR42_RS08245 -0.8 -1.8 hypothetical protein compare
RR42_RS32590 -0.8 -1.2 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS36120 -0.8 -3.3 LysR family transcriptional regulator compare
RR42_RS21595 -0.8 -2.1 IclR family transcriptional regulator compare
RR42_RS12055 -0.8 -2.3 acyltransferase compare
RR42_RS14395 -0.8 -1.4 entericidin compare
RR42_RS04770 -0.8 -1.1 methylglyoxal synthase compare
RR42_RS14530 -0.8 -2.2 2-hydroxyacid dehydrogenase compare
RR42_RS05115 -0.8 -1.9 LysR family transcriptional regulator compare
RR42_RS08590 -0.8 -1.5 baseplate assembly protein compare
RR42_RS08330 -0.8 -1.0 hypothetical protein compare
RR42_RS15420 -0.8 -1.5 hypothetical protein compare
RR42_RS03370 -0.8 -2.8 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS29785 -0.8 -1.9 hypothetical protein compare
RR42_RS18270 -0.8 -2.0 murein transglycosylase compare
RR42_RS23130 -0.8 -1.6 bleomycin resistance protein compare
RR42_RS05485 -0.8 -1.5 polynucleotide phosphorylase/polyadenylase compare
RR42_RS05385 -0.8 -1.6 LOG family protein compare
RR42_RS11550 -0.8 -2.2 3-oxoacyl-ACP reductase compare
RR42_RS27060 -0.8 -1.7 cation transporter compare
RR42_RS23230 -0.8 -1.4 glycerate kinase compare
RR42_RS00715 -0.8 -1.9 ferritin compare
RR42_RS14055 -0.8 -1.5 elongation factor 4 compare
RR42_RS08450 -0.8 -1.2 hypothetical protein compare
RR42_RS33575 -0.8 -1.5 hypothetical protein compare
RR42_RS26400 -0.8 -2.2 structural protein MipA compare
RR42_RS28330 -0.8 -2.4 enoyl-CoA hydratase compare
RR42_RS10415 -0.8 -0.9 hypothetical protein compare
RR42_RS20440 -0.8 -1.0 histidine kinase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium propionate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium propionate across organisms