Experiment set1IT039 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS16910 +1.6 2.9 histidine utilization protein HutD compare
RR42_RS27910 +1.6 5.9 Crp/Fnr family transcriptional regulator compare
RR42_RS28290 +1.6 4.3 DNA-binding protein compare
RR42_RS27915 +1.5 4.0 acyl-CoA synthetase compare
RR42_RS04300 +1.4 4.8 nitrogen regulatory protein P-II 1 compare
RR42_RS26455 +1.2 1.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS20195 +1.2 1.5 ATPase F0F1 compare
RR42_RS13265 +1.2 4.6 GntR family transcriptional regulator compare
RR42_RS21455 +1.2 3.1 transposase compare
RR42_RS11200 +1.1 4.2 XRE family transcriptional regulator compare
RR42_RS02215 +1.0 4.4 fumarate reductase compare
RR42_RS03910 +1.0 2.2 (2Fe-2S)-binding protein compare
RR42_RS10855 +1.0 1.3 diguanylate phosphodiesterase compare
RR42_RS07780 +1.0 3.5 hypothetical protein compare
RR42_RS05945 +1.0 1.7 thioredoxin compare
RR42_RS11680 +1.0 1.7 hypothetical protein compare
RR42_RS32505 +1.0 1.9 sulfonate ABC transporter ATP-binding protein compare
RR42_RS31495 +1.0 1.6 Cro/Cl family transcriptional regulator compare
RR42_RS16640 +0.9 1.3 LysR family transcriptional regulator compare
RR42_RS37045 +0.9 1.0 thiamine biosynthesis protein ApbE compare
RR42_RS07240 +0.9 1.1 hypothetical protein compare
RR42_RS33855 +0.9 1.9 TetR family transcriptional regulator compare
RR42_RS27470 +0.9 1.2 peroxiredoxin OsmC compare
RR42_RS06880 +0.9 1.7 hypothetical protein compare
RR42_RS01705 +0.9 2.3 Fis family transcriptional regulator compare
RR42_RS25030 +0.9 1.9 ABC transporter permease compare
RR42_RS14880 +0.9 2.8 hypothetical protein compare
RR42_RS07330 +0.9 5.2 histidine utilization repressor compare
RR42_RS06335 +0.8 1.2 cyclophilin compare
RR42_RS37135 +0.8 1.6 cold-shock protein compare
RR42_RS04090 +0.8 2.2 type II secretion system protein compare
RR42_RS13185 +0.8 4.8 RNA polymerase sigma factor RpoS compare
RR42_RS27710 +0.8 1.7 LysR family transcriptional regulator compare
RR42_RS13830 +0.8 1.1 hypothetical protein compare
RR42_RS36815 +0.8 2.3 ferredoxin compare
RR42_RS28920 +0.8 2.1 hypothetical protein compare
RR42_RS05210 +0.8 5.9 malic enzyme compare
RR42_RS36450 +0.8 1.3 acyl dehydratase compare
RR42_RS28005 +0.8 1.6 phosphonate/organophosphate ester transporter subunit compare
RR42_RS16545 +0.8 3.0 prolyl-tRNA synthetase compare
RR42_RS23970 +0.8 2.4 hypothetical protein compare
RR42_RS31915 +0.8 2.5 short-chain dehydrogenase compare
RR42_RS22030 +0.8 2.2 hypothetical protein compare
RR42_RS16335 +0.7 1.5 hypothetical protein compare
RR42_RS05410 +0.7 3.2 acetyltransferase compare
RR42_RS18485 +0.7 1.1 glutaredoxin compare
RR42_RS34585 +0.7 1.4 LysR family transcriptional regulator compare
RR42_RS09290 +0.7 1.3 hypothetical protein compare
RR42_RS32805 +0.7 1.0 damage-inducible protein compare
RR42_RS10240 +0.7 1.5 hypothetical protein compare
RR42_RS28705 +0.7 2.6 hypothetical protein compare
RR42_RS22910 +0.7 3.0 nitrate ABC transporter ATPase compare
RR42_RS02960 +0.7 1.5 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS23690 +0.7 2.2 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase compare
RR42_RS01565 +0.7 4.1 hypothetical protein compare
RR42_RS01740 +0.7 2.9 ATP-dependent protease compare
RR42_RS30285 +0.7 1.5 amidohydrolase compare
RR42_RS32645 +0.7 1.1 2-keto-4-pentenoate hydratase compare
RR42_RS11985 +0.7 1.5 glutathione ABC transporter permease compare
RR42_RS32070 +0.7 1.5 LysR family transcriptional regulator compare
RR42_RS27370 +0.7 3.2 zinc finger UBP-type protein compare
RR42_RS13365 +0.7 1.3 peptidase P60 compare
RR42_RS15640 +0.7 0.9 hypothetical protein compare
RR42_RS35240 +0.7 1.7 acyl-CoA dehydrogenase compare
RR42_RS11410 +0.7 1.4 hypothetical protein compare
RR42_RS16510 +0.6 1.4 hypothetical protein compare
RR42_RS04205 +0.6 1.6 glycine cleavage system regulatory protein compare
RR42_RS01650 +0.6 1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS01630 +0.6 1.0 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS31940 +0.6 2.1 2-nitropropane dioxygenase compare
RR42_RS21630 +0.6 1.3 Asp/Glu racemase compare
RR42_RS10590 +0.6 1.8 hypothetical protein compare
RR42_RS19735 +0.6 1.7 hypothetical protein compare
RR42_RS17235 +0.6 3.4 poly(A) polymerase compare
RR42_RS01360 +0.6 3.1 phenylacetic acid degradation protein compare
RR42_RS10310 +0.6 0.7 NADPH:quinone reductase compare
RR42_RS24575 +0.6 1.5 endoribonuclease L-PSP compare
RR42_RS31330 +0.6 0.7 LysR family transcriptional regulator compare
RR42_RS12305 +0.6 0.8 hypothetical protein compare
RR42_RS12430 +0.6 1.2 LysR family transcriptional regulator compare
RR42_RS35780 +0.6 1.5 chemotaxis protein CheY compare
RR42_RS33650 +0.6 2.0 IclR family transcriptional regulator compare
RR42_RS30810 +0.6 3.2 TetR family transcriptional regulator compare
RR42_RS07385 +0.6 1.7 Phasin (PHA-granule associated protein) compare
RR42_RS31690 +0.6 2.1 4-oxalocrotonate tautomerase compare
RR42_RS05895 +0.6 1.4 rhombosortase compare
RR42_RS11225 +0.6 1.7 peptide ABC transporter permease compare
RR42_RS22165 +0.6 0.8 hypothetical protein compare
RR42_RS35220 +0.6 1.4 peptide ABC transporter ATP-binding protein compare
RR42_RS06965 +0.6 1.5 hypothetical protein compare
RR42_RS15080 +0.6 2.2 GntR family transcriptional regulator compare
RR42_RS34020 +0.6 2.0 hypothetical protein compare
RR42_RS07995 +0.6 1.0 hypothetical protein compare
RR42_RS28610 +0.6 2.6 acyl-CoA dehydrogenase compare
RR42_RS05360 +0.6 1.1 membrane protein compare
RR42_RS29525 +0.6 1.0 hypothetical protein compare
RR42_RS16620 +0.6 1.7 hypothetical protein compare
RR42_RS01605 +0.6 2.0 hydrolase compare
RR42_RS35790 +0.6 2.7 chemotaxis protein CheD compare
RR42_RS05600 +0.6 2.5 acyl-CoA dehydrogenase compare
RR42_RS26200 +0.6 1.2 hypothetical protein compare
RR42_RS18425 +0.6 0.9 hypothetical protein compare
RR42_RS21825 +0.6 1.3 hypothetical protein compare
RR42_RS35715 +0.6 2.1 flagellar basal body rod modification protein FlgD compare
RR42_RS13130 +0.6 1.1 membrane protein compare
RR42_RS02165 +0.6 2.7 LysR family transcriptional regulator compare
RR42_RS20070 +0.5 4.5 glycine dehydrogenase compare
RR42_RS07255 +0.5 1.3 hypothetical protein compare
RR42_RS06405 +0.5 1.3 membrane protein compare
RR42_RS23640 +0.5 2.2 flagellar biosynthesis protein FliS compare
RR42_RS20810 +0.5 1.0 hypothetical protein compare
RR42_RS00815 +0.5 2.0 hypothetical protein compare
RR42_RS36570 +0.5 0.8 prevent-host-death protein compare
RR42_RS23125 +0.5 1.0 hypothetical protein compare
RR42_RS09680 +0.5 2.2 hypothetical protein compare
RR42_RS18140 +0.5 0.6 MarR family transcriptional regulator compare
RR42_RS11395 +0.5 2.2 LysR family transcriptional regulator compare
RR42_RS14550 +0.5 1.7 DNA glycosylase compare
RR42_RS10165 +0.5 1.5 hypothetical protein compare
RR42_RS35695 +0.5 1.6 flagellar L-ring protein FlgH compare
RR42_RS28085 +0.5 1.0 alkylphosphonate utilization protein PhnG compare
RR42_RS04545 +0.5 3.7 deacetylase compare
RR42_RS15060 +0.5 1.1 membrane protein compare
RR42_RS26540 +0.5 0.7 3-phosphoglycerate dehydrogenase compare
RR42_RS14580 +0.5 2.3 multidrug DMT transporter permease compare
RR42_RS01475 +0.5 3.4 hypothetical protein compare
RR42_RS22990 +0.5 1.9 23S ribosomal RNA compare
RR42_RS17635 +0.5 1.8 magnesium transporter CorA compare
RR42_RS33375 +0.5 1.7 cupin compare
RR42_RS23845 +0.5 1.2 hypothetical protein compare
RR42_RS06870 +0.5 2.0 hypothetical protein compare
RR42_RS00525 +0.5 1.7 MarR family transcriptional regulator compare
RR42_RS29610 +0.5 0.5 cytochrome C2 compare
RR42_RS31505 +0.5 1.1 hypothetical protein compare
RR42_RS13940 +0.5 2.6 hypothetical protein compare
RR42_RS15145 +0.5 1.4 membrane protein compare
RR42_RS07525 +0.5 2.0 alpha/beta hydrolase compare
RR42_RS31575 +0.5 1.7 GntR family transcriptional regulator compare
RR42_RS24850 +0.5 2.3 alpha/beta hydrolase compare
RR42_RS24190 +0.5 1.7 LysR family transcriptional regulator compare
RR42_RS35975 +0.5 1.7 pilus assembly protein TadC compare
RR42_RS23220 +0.5 1.2 MarR family transcriptional regulator compare
RR42_RS07425 +0.5 2.1 IclR family transcriptional regulator compare
RR42_RS35725 +0.5 1.3 flagellar biosynthesis protein FlgB compare
RR42_RS33600 +0.5 0.8 oxidoreductase compare
RR42_RS33975 +0.5 1.5 hypothetical protein compare
RR42_RS34905 +0.5 1.6 enoyl-CoA hydratase compare
RR42_RS23955 +0.5 1.8 hypothetical protein compare
RR42_RS13945 +0.5 2.1 hypothetical protein compare
RR42_RS00755 +0.5 2.3 3-oxoadipate enol-lactonase compare
RR42_RS27160 +0.5 1.1 acetyl-CoA acetyltransferase compare
RR42_RS08240 +0.5 1.8 DNA-binding protein compare
RR42_RS18995 +0.5 2.8 transposase compare
RR42_RS06250 +0.5 1.2 dihydrodipicolinate synthase compare
RR42_RS17590 +0.5 0.8 16S rRNA methyltransferase compare
RR42_RS28385 +0.5 2.1 ABC transporter substrate-binding protein compare
RR42_RS02350 +0.5 2.0 VWA domain-containing protein compare
RR42_RS26085 +0.5 1.3 acetoacetyl-CoA reductase compare
RR42_RS21850 +0.5 1.3 3-oxoadipate enol-lactonase compare
RR42_RS09240 +0.5 1.0 MFS transporter compare
RR42_RS34140 +0.5 2.3 hypothetical protein compare
RR42_RS28300 +0.5 2.7 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) compare
RR42_RS17970 +0.5 1.0 hypothetical protein compare
RR42_RS14520 +0.5 1.2 mobilization protein compare
RR42_RS18730 +0.5 0.8 hypothetical protein compare
RR42_RS21925 +0.5 1.7 membrane protein compare
RR42_RS00600 +0.5 1.0 DeoR family transcriptional regulator compare
RR42_RS31240 +0.5 1.7 AMP-dependent synthetase compare
RR42_RS05930 +0.5 1.1 RNA-binding protein S4 compare
RR42_RS28550 +0.5 1.1 enoyl-CoA hydratase compare
RR42_RS16350 +0.5 1.7 hypothetical protein compare
RR42_RS32685 +0.5 1.9 phenol hydroxylase compare
RR42_RS11415 +0.5 1.4 hypothetical protein compare
RR42_RS15960 +0.5 2.2 hypothetical protein compare
RR42_RS14785 +0.5 1.8 hypothetical protein compare
RR42_RS27705 +0.5 1.1 NAD-dependent deacetylase compare
RR42_RS34690 +0.5 1.3 permease compare
RR42_RS11425 +0.5 1.1 MFS transporter compare
RR42_RS23305 +0.5 0.7 hypothetical protein compare
RR42_RS26130 +0.5 1.5 C4-dicarboxylate ABC transporter compare
RR42_RS06460 +0.5 2.0 alpha/beta hydrolase compare
RR42_RS19890 +0.5 1.5 hypothetical protein compare
RR42_RS27095 +0.5 1.1 hypothetical protein compare
RR42_RS03395 +0.5 2.2 membrane protein compare
RR42_RS21180 +0.5 1.3 GNAT family acetyltransferase compare
RR42_RS15030 +0.5 1.5 3-mercaptopyruvate sulfurtransferase compare
RR42_RS32965 +0.5 1.8 salicylaldehyde dehydrogenase compare
RR42_RS13640 +0.5 1.3 MarR family transcriptional regulator compare
RR42_RS11480 +0.5 1.5 cytochrome C compare
RR42_RS12860 +0.4 1.0 pseudouridine synthase compare
RR42_RS22400 +0.4 2.2 FMN reductase compare
RR42_RS25730 +0.4 1.5 hypothetical protein compare
RR42_RS32385 +0.4 1.3 citrate synthase compare
RR42_RS03280 +0.4 1.7 LysR family transcriptional regulator compare
RR42_RS32435 +0.4 2.2 hypothetical protein compare
RR42_RS27035 +0.4 1.2 hypothetical protein compare
RR42_RS32865 +0.4 2.2 4-coumarate--CoA ligase compare
RR42_RS14950 +0.4 1.3 membrane protein compare
RR42_RS13805 +0.4 1.9 NTP pyrophosphohydrolase compare
RR42_RS14355 +0.4 1.7 DNA methylase N-4 compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium propionate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium propionate across organisms