Experiment set1IT038 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Paraquat dichloride 0.03 mg/ml

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.5 -6.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4369 -3.9 -3.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2574 -3.6 -4.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_4384 -3.0 -7.3 Major facilitator family transporter conserved
Pf6N2E2_5160 -2.7 -2.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3847 -2.4 -5.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3611 -2.2 -2.6 HflC protein compare
Pf6N2E2_3460 -2.1 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4974 -2.1 -11.2 DedA protein compare
Pf6N2E2_2217 -2.0 -7.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4353 -2.0 -5.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1162 -2.0 -2.9 Transmembrane amino acid efflux protein compare
Pf6N2E2_4352 -1.9 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2010 -1.9 -3.0 hypothetical protein compare
Pf6N2E2_5014 -1.8 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3876 -1.8 -5.0 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4072 -1.8 -5.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5430 -1.6 -9.9 Transglycosylase, Slt family compare
Pf6N2E2_3251 -1.6 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2218 -1.5 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4416 -1.5 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_3908 -1.4 -6.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5508 -1.4 -2.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3504 -1.4 -9.4 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_4599 -1.4 -3.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1545 -1.4 -3.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5794 -1.3 -3.3 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3770 -1.3 -2.6 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3612 -1.3 -2.0 HflK protein compare
Pf6N2E2_2753 -1.2 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_5640 -1.2 -2.8 FIG00955597: hypothetical protein compare
Pf6N2E2_2503 -1.2 -2.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5316 -1.2 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1056 -1.2 -0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4162 -1.2 -3.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2510 -1.2 -3.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2074 -1.2 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4451 -1.2 -5.9 FIG139438: lipoprotein B compare
Pf6N2E2_451 -1.2 -1.7 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_5111 -1.2 -3.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5671 -1.2 -3.8 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2513 -1.1 -1.8 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2707 -1.1 -3.4 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4351 -1.1 -7.2 Predicted signal transduction protein compare
Pf6N2E2_623 -1.1 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_3252 -1.1 -6.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4963 -1.1 -2.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_4074 -1.1 -8.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3607 -1.0 -5.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3198 -1.0 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4743 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_5884 -1.0 -5.4 Sensor histidine kinase compare
Pf6N2E2_3641 -1.0 -2.4 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_3192 -1.0 -4.2 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3940 -1.0 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3947 -1.0 -1.8 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3240 -1.0 -1.8 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_4159 -1.0 -4.3 Cytochrome c4 compare
Pf6N2E2_3505 -1.0 -2.1 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4073 -0.9 -4.2 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf6N2E2_4092 -0.9 -3.7 FIG00954395: hypothetical protein compare
Pf6N2E2_4071 -0.9 -4.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3782 -0.9 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3839 -0.9 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2984 -0.9 -1.3 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3261 -0.9 -3.7 hypothetical protein compare
Pf6N2E2_4673 -0.9 -3.4 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_2312 -0.9 -2.0 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_1783 -0.9 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4454 -0.9 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3885 -0.9 -2.7 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_955 -0.9 -2.0 FIG00953508: hypothetical protein compare
Pf6N2E2_84 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4075 -0.8 -3.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1140 -0.8 -2.4 Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-) compare
Pf6N2E2_350 -0.8 -1.8 Gfa-like protein compare
Pf6N2E2_2912 -0.8 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_2285 -0.8 -1.4 FIG00954079: hypothetical protein compare
Pf6N2E2_2264 -0.8 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_178 -0.8 -1.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_622 -0.8 -2.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3625 -0.8 -5.5 Flagellar motor rotation protein MotA compare
Pf6N2E2_3841 -0.8 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3397 -0.8 -2.5 Phage protein compare
Pf6N2E2_5902 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_5705 -0.8 -1.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3762 -0.8 -4.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_237 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_4206 -0.8 -1.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2438 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_3270 -0.8 -3.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1090 -0.8 -3.4 Transcriptional regulator for ferulate or vanillate catabolism compare
Pf6N2E2_1081 -0.7 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_4928 -0.7 -1.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_441 -0.7 -1.9 FIG00958773: hypothetical protein compare
Pf6N2E2_1043 -0.7 -2.7 Transcriptional regulator, IclR family compare
Pf6N2E2_563 -0.7 -3.7 Serine transporter compare
Pf6N2E2_2508 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_1792 -0.7 -2.4 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_5300 -0.7 -5.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5428 -0.7 -3.7 DNA recombination and repair protein RecO compare
Pf6N2E2_5520 -0.7 -3.0 Sensory box histidine kinase compare
Pf6N2E2_2320 -0.7 -2.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3325 -0.7 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_1917 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_3842 -0.7 -2.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5723 -0.7 -4.6 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_2706 -0.7 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1083 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2850 -0.7 -3.3 Transporter, LysE family compare
Pf6N2E2_3179 -0.7 -1.6 FIG021952: putative membrane protein compare
Pf6N2E2_939 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_170 -0.7 -1.8 lipoprotein, putative compare
Pf6N2E2_2373 -0.7 -1.6 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_5758 -0.7 -2.0 FIG00957314: hypothetical protein compare
Pf6N2E2_5178 -0.7 -1.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_906 -0.7 -2.2 ISPpu14, transposase Orf2 compare
Pf6N2E2_2552 -0.7 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5406 -0.7 -2.0 FIG00958224: hypothetical protein compare
Pf6N2E2_3516 -0.7 -1.4 Probable transmembrane protein compare
Pf6N2E2_689 -0.7 -2.2 FIG00956189: hypothetical protein compare
Pf6N2E2_4987 -0.6 -1.0 MaoC-like domain protein compare
Pf6N2E2_4187 -0.6 -2.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4197 -0.6 -4.2 DNA recombination and repair protein RecF compare
Pf6N2E2_3271 -0.6 -2.0 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_420 -0.6 -1.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_122 -0.6 -1.7 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_1249 -0.6 -2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_1044 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_4570 -0.6 -1.7 Cation/multidrug efflux pump compare
Pf6N2E2_5956 -0.6 -3.1 FIG004453: protein YceG like compare
Pf6N2E2_1440 -0.6 -2.6 Putative tRNA-m1A22 methylase compare
Pf6N2E2_238 -0.6 -1.1 hypothetical protein compare
Pf6N2E2_2549 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_4272 -0.6 -2.2 putative membrane protein compare
Pf6N2E2_2022 -0.6 -3.2 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4372 -0.6 -2.1 FIG00460773: hypothetical protein compare
Pf6N2E2_2325 -0.6 -2.7 Recombination protein RecR compare
Pf6N2E2_4273 -0.6 -3.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_778 -0.6 -2.0 Probable lipoprotein signal peptide compare
Pf6N2E2_1514 -0.6 -2.1 lipoprotein OprI, putative compare
Pf6N2E2_2465 -0.6 -2.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4418 -0.6 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3021 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_4120 -0.6 -4.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_4364 -0.6 -1.5 Protein YicC compare
Pf6N2E2_3661 -0.6 -2.4 hypothetical protein compare
Pf6N2E2_5536 -0.6 -1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4585 -0.6 -4.5 Cell division protein FtsX compare
Pf6N2E2_4694 -0.6 -2.6 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3603 -0.6 -2.6 FIG003573: hypothetical protein compare
Pf6N2E2_4535 -0.6 -3.2 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_3199 -0.6 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1343 -0.6 -2.0 Transcriptional regulator compare
Pf6N2E2_5554 -0.6 -2.1 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_895 -0.6 -2.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_3351 -0.6 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_384 -0.6 -1.6 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5531 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_2201 -0.6 -1.8 Transmembrane regulator protein PrtR compare
Pf6N2E2_4438 -0.6 -2.9 hypothetical protein compare
Pf6N2E2_3624 -0.6 -3.9 Flagellar motor rotation protein MotB compare
Pf6N2E2_2156 -0.6 -1.0 Putative polyketide synthase (Fragment) compare
Pf6N2E2_2507 -0.6 -3.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2444 -0.6 -2.6 Glutathione peroxidase family protein compare
Pf6N2E2_5945 -0.6 -1.5 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf6N2E2_6001 -0.6 -3.4 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_855 -0.5 -1.7 Transcriptional regulator, IclR family compare
Pf6N2E2_2857 -0.5 -2.3 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_5967 -0.5 -1.7 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_302 -0.5 -2.4 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_1446 -0.5 -1.9 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_3634 -0.5 -0.9 Transporter compare
Pf6N2E2_446 -0.5 -3.3 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_3588 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_1894 -0.5 -2.7 hypothetical protein compare
Pf6N2E2_5820 -0.5 -2.1 FIG00957914: hypothetical protein compare
Pf6N2E2_4551 -0.5 -2.2 hypothetical protein compare
Pf6N2E2_3616 -0.5 -3.6 DNA mismatch repair protein MutL compare
Pf6N2E2_2981 -0.5 -1.6 FIG00956655: hypothetical protein compare
Pf6N2E2_64 -0.5 -1.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_2634 -0.5 -3.7 Potassium uptake protein TrkH compare
Pf6N2E2_601 -0.5 -2.0 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_5714 -0.5 -1.4 Flavoprotein WrbA compare
Pf6N2E2_282 -0.5 -0.8 GNAT family acetyltransferase YjcF compare
Pf6N2E2_1870 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_882 -0.5 -1.8 FIG00961517: hypothetical protein compare
Pf6N2E2_1805 -0.5 -2.0 Multidrug resistance protein B compare
Pf6N2E2_4485 -0.5 -3.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_5664 -0.5 -2.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_2309 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_3461 -0.5 -0.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_693 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_1810 -0.5 -1.5 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_3264 -0.5 -1.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3844 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_5943 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_3840 -0.5 -2.2 FIG00956267: hypothetical protein compare
Pf6N2E2_4545 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_1884 -0.5 -1.6 oxidoreductase, short-chain dehydrogenase/reductase family compare


Specific Phenotypes

For 3 genes in this experiment

For stress Paraquat dichloride in Pseudomonas fluorescens FW300-N2E2

For stress Paraquat dichloride across organisms