Experiment set1IT038 for Pseudomonas fluorescens FW300-N1B4

Compare to:

LB with Cobalt chloride hexahydrate 0.3125 mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2208 -2.7 -6.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_731 -2.6 -3.8 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_1403 -2.2 -6.7 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_2386 -2.2 -5.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein conserved
Pf1N1B4_888 -2.1 -4.5 Transglycosylase, Slt family compare
Pf1N1B4_4765 -2.1 -3.0 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_2711 -2.0 -3.0 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf1N1B4_2105 -1.9 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3325 -1.9 -2.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_58 -1.9 -5.9 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_72 -1.9 -2.2 Transcriptional regulator, LysR family compare
Pf1N1B4_2493 -1.8 -3.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_1554 -1.8 -6.6 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_4262 -1.8 -4.5 Mg(2+) transport ATPase, P-type (EC 3.6.3.2) compare
Pf1N1B4_3506 -1.8 -6.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4470 -1.7 -2.9 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_3447 -1.7 -5.1 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf1N1B4_2144 -1.7 -6.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_1463 -1.6 -7.4 hypothetical protein compare
Pf1N1B4_4612 -1.6 -3.2 FIG00954117: hypothetical protein compare
Pf1N1B4_4446 -1.6 -2.6 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_4980 -1.6 -2.4 putative lipoprotein compare
Pf1N1B4_2026 -1.5 -2.8 Transcriptional regulator compare
Pf1N1B4_4560 -1.5 -2.7 Transcriptional regulator, MerR family compare
Pf1N1B4_2856 -1.5 -3.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3777 -1.5 -4.2 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_262 -1.5 -10.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_412 -1.5 -2.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_5834 -1.4 -2.7 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_4957 -1.4 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_4810 -1.4 -2.1 Polymyxin resistance protein PmrM compare
Pf1N1B4_2850 -1.3 -5.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_6037 -1.3 -2.6 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_2421 -1.3 -2.2 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_823 -1.3 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2090 -1.2 -2.7 FIG00959590: hypothetical protein compare
Pf1N1B4_1 -1.2 -2.2 Colicin V production protein compare
Pf1N1B4_2112 -1.2 -8.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_3483 -1.2 -3.5 Transcriptional regulatory protein PhoP compare
Pf1N1B4_1014 -1.2 -3.9 Serine transporter compare
Pf1N1B4_3241 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_2484 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_627 -1.2 -2.5 hypothetical protein compare
Pf1N1B4_2154 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_4729 -1.2 -1.9 Hemolysin-type calcium-binding region compare
Pf1N1B4_1845 -1.2 -2.5 FIG00954395: hypothetical protein compare
Pf1N1B4_4558 -1.2 -2.5 Outer membrane lipoprotein-sorting protein compare
Pf1N1B4_1462 -1.1 -7.4 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_5224 -1.1 -1.4 tRNA-Arg-CCT compare
Pf1N1B4_3685 -1.1 -3.2 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_5814 -1.1 -2.8 putative membrane protein compare
Pf1N1B4_1993 -1.1 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_5266 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_2352 -1.1 -4.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_5682 -1.1 -2.3 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_578 -1.1 -1.8 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_4106 -1.1 -2.2 Mesenchymal stem cell protein DSCD75 compare
Pf1N1B4_1332 -1.1 -1.9 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_5146 -1.1 -1.6 Chromosome initiation inhibitor compare
Pf1N1B4_1059 -1.1 -1.9 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1975 -1.0 -2.1 Transcriptional regulator, AsnC family compare
Pf1N1B4_5827 -1.0 -3.0 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_5772 -1.0 -3.9 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_769 -1.0 -4.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4257 -1.0 -1.3 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4549 -1.0 -1.6 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
Pf1N1B4_1334 -1.0 -1.5 FIG00955840: hypothetical protein compare
Pf1N1B4_476 -1.0 -2.3 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_2021 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_2433 -1.0 -2.3 FIG00953108: hypothetical protein compare
Pf1N1B4_4264 -1.0 -2.7 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) compare
Pf1N1B4_5829 -1.0 -1.6 FIG005107: hypothetical protein compare
Pf1N1B4_5720 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_4004 -1.0 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_131 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_3491 -1.0 -3.1 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf1N1B4_6024 -1.0 -2.8 FIG00953292: hypothetical protein compare
Pf1N1B4_1469 -1.0 -7.5 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_4208 -0.9 -2.0 organophosphate pesticide hydrolase compare
Pf1N1B4_2001 -0.9 -2.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf1N1B4_3305 -0.9 -2.1 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_2912 -0.9 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_3638 -0.9 -2.7 FIG00955434: hypothetical protein compare
Pf1N1B4_1340 -0.9 -1.7 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_2102 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4331 -0.9 -1.4 Transporter, LysE family compare
Pf1N1B4_3368 -0.9 -1.5 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_3578 -0.9 -2.5 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_2792 -0.9 -2.5 FIG00953454: hypothetical protein compare
Pf1N1B4_63 -0.9 -1.0 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_2894 -0.9 -2.3 FIG00956317: hypothetical protein compare
Pf1N1B4_3006 -0.9 -3.5 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_1611 -0.9 -3.2 Nitrogen regulation protein NR(I) compare
Pf1N1B4_4103 -0.9 -1.4 Flagellar synthesis regulator FleN compare
Pf1N1B4_3153 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_5768 -0.9 -1.8 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_1837 -0.9 -1.2 Osmotically inducible protein C compare
Pf1N1B4_835 -0.9 -1.7 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_5583 -0.8 -1.1 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf1N1B4_4494 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_574 -0.8 -1.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_3546 -0.8 -1.2 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_2891 -0.8 -2.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf1N1B4_2447 -0.8 -3.2 GbcA Glycine betaine demethylase subunit A compare
Pf1N1B4_722 -0.8 -1.4 SAM-dependent methyltransferases compare
Pf1N1B4_2874 -0.8 -1.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3965 -0.8 -1.7 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4636 -0.8 -1.4 TPR domain protein in aerotolerance operon compare
Pf1N1B4_2256 -0.8 -4.4 glutamine synthetase family protein compare
Pf1N1B4_2857 -0.8 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3849 -0.8 -2.6 Transcriptional regulator, GntR family compare
Pf1N1B4_239 -0.8 -2.0 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_3001 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_5972 -0.8 -1.8 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf1N1B4_3656 -0.8 -1.4 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3722 -0.8 -1.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3594 -0.8 -1.8 Flagellin protein FlaA compare
Pf1N1B4_625 -0.8 -2.6 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_2612 -0.8 -2.3 Putative transport protein compare
Pf1N1B4_2479 -0.8 -1.5 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_1781 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_2297 -0.8 -2.2 FIG00954147: hypothetical protein compare
Pf1N1B4_5376 -0.8 -1.9 hypothetical protein compare
Pf1N1B4_493 -0.8 -2.0 hypothetical protein compare
Pf1N1B4_1897 -0.8 -2.5 Integral membrane protein TerC compare
Pf1N1B4_5329 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_5851 -0.8 -1.9 Transcriptional regulator, RpiR family compare
Pf1N1B4_4853 -0.8 -2.0 Glycosyltransferase compare
Pf1N1B4_3044 -0.8 -2.2 Putative lipoprotein, specific for Pseudomonas, in cluster with COG2110 compare
Pf1N1B4_2568 -0.8 -1.6 Translation elongation factor Tu compare
Pf1N1B4_3246 -0.8 -2.3 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_4448 -0.8 -1.5 COGs COG2343 compare
Pf1N1B4_139 -0.8 -1.6 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_5054 -0.8 -2.5 Two-component system regulatory protein compare
Pf1N1B4_6036 -0.8 -1.8 FIG00953132: hypothetical protein compare
Pf1N1B4_3098 -0.8 -1.8 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_4238 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_5036 -0.8 -2.5 hypothetical protein compare
Pf1N1B4_5904 -0.8 -1.4 FIG00955320: hypothetical protein compare
Pf1N1B4_4521 -0.8 -2.3 Probable transmembrane protein compare
Pf1N1B4_4027 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_980 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_3802 -0.8 -1.4 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_3498 -0.8 -1.5 FIG00953240: hypothetical protein compare
Pf1N1B4_4887 -0.8 -1.7 Pirin compare
Pf1N1B4_4640 -0.7 -2.1 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_535 -0.7 -2.0 FIG00953341: hypothetical protein compare
Pf1N1B4_2807 -0.7 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_4806 -0.7 -1.8 Argininosuccinate lyase (EC 4.3.2.1) compare
Pf1N1B4_4648 -0.7 -1.6 transcriptional regulator, MerR family compare
Pf1N1B4_1486 -0.7 -2.4 VgrG protein compare
Pf1N1B4_5383 -0.7 -4.2 hypothetical protein compare
Pf1N1B4_5452 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_4857 -0.7 -2.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3711 -0.7 -3.1 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_3825 -0.7 -2.1 FIG00959101: hypothetical protein compare
Pf1N1B4_2674 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_3184 -0.7 -1.8 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_4632 -0.7 -2.1 Exonuclease SbcC compare
Pf1N1B4_1679 -0.7 -1.1 Membrane-fusion protein compare
Pf1N1B4_1619 -0.7 -4.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2145 -0.7 -0.8 Translation initiation inhibitor compare
Pf1N1B4_3074 -0.7 -1.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_2534 -0.7 -1.5 DnaJ-like protein DjlA compare
Pf1N1B4_2067 -0.7 -2.1 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_137 -0.7 -1.5 Pyoverdine biosynthesis related protein PvdP compare
Pf1N1B4_2143 -0.7 -4.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_906 -0.7 -1.7 Glutaredoxin NrdH compare
Pf1N1B4_1458 -0.7 -3.5 Probable transcription regulator Mig-14 compare
Pf1N1B4_1661 -0.7 -2.4 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_5446 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_3905 -0.7 -2.1 FIG00953423: hypothetical protein compare
Pf1N1B4_2833 -0.7 -1.7 Benzoate transport protein compare
Pf1N1B4_4100 -0.7 -1.6 probable transmembrane protein compare
Pf1N1B4_2283 -0.7 -1.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4916 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_3927 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_4187 -0.7 -2.4 Probable signal peptide protein compare
Pf1N1B4_5322 -0.7 -2.5 hypothetical protein compare
Pf1N1B4_4715 -0.7 -1.4 Transcriptional regulator compare
Pf1N1B4_4835 -0.7 -0.9 Carbon starvation protein A compare
Pf1N1B4_525 -0.7 -1.6 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_1055 -0.7 -1.7 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_2284 -0.7 -2.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_4659 -0.7 -1.5 Putative outer membrane lipoprotein compare
Pf1N1B4_135 -0.6 -1.5 Pyoverdine efflux carrier and ATP binding protein compare
Pf1N1B4_5813 -0.6 -1.2 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
Pf1N1B4_336 -0.6 -5.0 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_458 -0.6 -2.3 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C compare
Pf1N1B4_2368 -0.6 -1.7 Malonate transporter, MadL subunit compare
Pf1N1B4_4307 -0.6 -1.9 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Pf1N1B4_5511 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_2456 -0.6 -1.3 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_5976 -0.6 -1.0 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_4568 -0.6 -1.1 FIG00793915: hypothetical protein compare
Pf1N1B4_4402 -0.6 -1.6 SoxH protein, homolog compare
Pf1N1B4_910 -0.6 -1.9 Cyanate transport protein CynX compare
Pf1N1B4_996 -0.6 -1.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_885 -0.6 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3473 -0.6 -1.9 Flagellar basal-body rod protein FlgC compare


Specific Phenotypes

For 3 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N1B4

For stress Cobalt chloride hexahydrate across organisms