Experiment set1IT038 for Paraburkholderia graminis OAS925

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_003158 -5.2 -5.1 phosphoserine aminotransferase compare
ABIE53_003017 -5.1 -10.8 trehalose 6-phosphate phosphatase compare
ABIE53_000423 -4.8 -4.7 DnaK suppressor protein compare
ABIE53_000838 -4.3 -9.2 starvation-inducible DNA-binding protein compare
ABIE53_004811 -4.3 -5.9 tryptophan synthase alpha chain compare
ABIE53_000414 -4.3 -17.4 homoserine O-acetyltransferase compare
ABIE53_001588 -4.1 -3.9 triosephosphate isomerase compare
ABIE53_003157 -4.0 -8.6 chorismate mutase/prephenate dehydratase compare
ABIE53_000768 -4.0 -10.4 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_000663 -3.9 -13.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_001230 -3.9 -10.7 sulfate adenylyltransferase subunit 1 compare
ABIE53_004804 -3.8 -7.8 3-isopropylmalate dehydrogenase compare
ABIE53_004803 -3.8 -6.8 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003536 -3.8 -5.8 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_000061 -3.8 -5.8 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_004801 -3.8 -8.0 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_001232 -3.7 -2.5 sirohydrochlorin cobaltochelatase compare
ABIE53_002117 -3.6 -5.9 ATP-dependent Lon protease compare
ABIE53_003588 -3.6 -4.2 glutamate 5-kinase compare
ABIE53_000667 -3.6 -10.5 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001228 -3.5 -5.3 phosphoadenosine phosphosulfate reductase compare
ABIE53_004817 -3.5 -11.1 O-succinylhomoserine sulfhydrylase compare
ABIE53_003749 -3.5 -7.4 diaminopimelate decarboxylase compare
ABIE53_005782 -3.4 -2.4 hypothetical protein compare
ABIE53_003734 -3.4 -10.3 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_002857 -3.4 -15.2 phosphomethylpyrimidine synthase compare
ABIE53_003735 -3.3 -5.1 hypothetical protein compare
ABIE53_000646 -3.3 -9.8 aerobic C4-dicarboxylate transport protein conserved
ABIE53_003305 -3.3 -9.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003543 -3.3 -17.9 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
ABIE53_001226 -3.2 -9.1 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_003428 -3.2 -4.8 phosphoglycerate kinase compare
ABIE53_000840 -3.1 -5.6 pyrroline-5-carboxylate reductase compare
ABIE53_003640 -3.1 -8.8 anthranilate synthase component 1 compare
ABIE53_002528 -3.1 -2.1 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_002485 -3.0 -13.5 pyruvate,water dikinase compare
ABIE53_002762 -3.0 -4.6 enolase compare
ABIE53_003261 -3.0 -12.8 undecaprenyl-diphosphatase compare
ABIE53_003159 -2.9 -8.0 phosphoserine aminotransferase compare
ABIE53_003306 -2.9 -10.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_006141 -2.9 -2.8 aerobic-type carbon monoxide dehydrogenase small subunit (CoxS/CutS family) compare
ABIE53_000262 -2.9 -2.7 chromosome partitioning protein compare
ABIE53_002116 -2.9 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_000648 -2.8 -3.8 two-component system C4-dicarboxylate transport response regulator DctD compare
ABIE53_001229 -2.8 -8.9 sulfate adenylyltransferase subunit 2 compare
ABIE53_001644 -2.7 -4.1 aromatic-amino-acid transaminase compare
ABIE53_000718 -2.6 -16.0 RNA polymerase sigma-54 factor compare
ABIE53_003162 -2.5 -3.0 OOP family OmpA-OmpF porin compare
ABIE53_003043 -2.4 -16.6 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_003531 -2.4 -2.3 Fur family ferric uptake transcriptional regulator compare
ABIE53_000647 -2.4 -13.3 two-component system C4-dicarboxylate transport sensor histidine kinase DctB conserved
ABIE53_000850 -2.4 -7.8 3-deoxy-7-phosphoheptulonate synthase compare
ABIE53_000403 -2.4 -3.9 rod shape-determining protein MreD compare
ABIE53_002546 -2.4 -3.3 cell wall-associated NlpC family hydrolase compare
ABIE53_001227 -2.3 -1.9 uncharacterized protein (DUF934 family) compare
ABIE53_002077 -2.3 -2.1 phosphoserine phosphatase compare
ABIE53_005596 -2.2 -8.2 DNA-binding IclR family transcriptional regulator compare
ABIE53_002138 -2.2 -7.3 glucose-6-phosphate isomerase compare
ABIE53_000944 -2.1 -2.2 hypothetical protein compare
ABIE53_003494 -2.1 -3.3 Holliday junction DNA helicase RuvA compare
ABIE53_003426 -2.1 -3.4 fructose-bisphosphate aldolase class II compare
ABIE53_000883 -2.1 -2.0 colicin import membrane protein compare
ABIE53_001225 -2.1 -6.9 LysR family cys regulon transcriptional activator compare
ABIE53_002496 -2.0 -10.9 regulator of sigma E protease compare
ABIE53_000666 -2.0 -4.1 preprotein translocase subunit SecB compare
ABIE53_000830 -2.0 -3.1 preprotein translocase subunit YajC compare
ABIE53_001991 -1.9 -5.8 sulfate transport system permease protein compare
ABIE53_000063 -1.9 -4.5 adenosylhomocysteinase compare
ABIE53_003586 -1.9 -8.5 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_003565 -1.9 -4.6 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000884 -1.9 -4.0 biopolymer transport protein TolR compare
ABIE53_003495 -1.9 -3.5 Holliday junction DNA helicase RuvB compare
ABIE53_003298 -1.9 -5.8 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_006508 -1.8 -5.2 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_000885 -1.8 -7.6 biopolymer transport protein TolQ compare
ABIE53_004227 -1.8 -6.2 signal transduction histidine kinase compare
ABIE53_001140 -1.8 -2.6 dTDP-4-dehydrorhamnose reductase compare
ABIE53_000731 -1.8 -11.0 putative PurR-regulated permease PerM compare
ABIE53_001757 -1.8 -2.7 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_003752 -1.8 -1.3 cytochrome c-type biogenesis protein CcsB compare
ABIE53_004255 -1.8 -2.0 hypothetical protein compare
ABIE53_004602 -1.8 -1.9 hypothetical protein compare
ABIE53_002004 -1.7 -7.9 anti-sigma factor RsiW compare
ABIE53_003815 -1.7 -3.0 tRNA-Arg compare
ABIE53_003733 -1.7 -2.8 glutamate synthase domain-containing protein 3 compare
ABIE53_001575 -1.7 -1.8 acetolactate synthase-1/3 small subunit compare
ABIE53_003638 -1.7 -3.7 ribulose-phosphate 3-epimerase compare
ABIE53_001869 -1.6 -1.6 ABC-type sugar transport system substrate-binding protein compare
ABIE53_005703 -1.6 -2.6 two-component system copper resistance phosphate regulon response regulator CusR compare
ABIE53_005566 -1.6 -5.4 FMN reductase compare
ABIE53_004834 -1.6 -1.7 DNA-binding transcriptional LysR family regulator compare
ABIE53_001853 -1.5 -1.1 hypothetical protein compare
ABIE53_002587 -1.5 -2.6 DHA2 family multidrug resistance protein compare
ABIE53_003535 -1.5 -10.9 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_006476 -1.5 -1.4 hypothetical protein compare
ABIE53_005236 -1.5 -1.4 DNA-binding MarR family transcriptional regulator compare
ABIE53_003231 -1.5 -1.2 DNA-directed RNA polymerase subunit omega compare
ABIE53_000678 -1.4 -6.5 cytochrome c oxidase subunit 3 compare
ABIE53_005390 -1.4 -1.9 hypothetical protein compare
ABIE53_000833 -1.4 -4.6 ATP-dependent DNA helicase RecG compare
ABIE53_006559 -1.4 -1.6 monosaccharide-transporting ATPase compare
ABIE53_001992 -1.4 -6.4 sulfate transport system permease protein compare
ABIE53_000614 -1.4 -3.4 rubrerythrin compare
ABIE53_002404 -1.4 -2.2 hypothetical protein compare
ABIE53_000674 -1.4 -6.8 cytochrome c oxidase subunit 1 compare
ABIE53_005529 -1.4 -3.7 putative transcriptional regulator YheO compare
ABIE53_000237 -1.4 -2.9 glycine cleavage system H protein compare
ABIE53_005214 -1.3 -1.5 polyisoprenoid-binding protein YceI compare
ABIE53_003674 -1.3 -4.1 AcrR family transcriptional regulator compare
ABIE53_005283 -1.3 -2.1 hypothetical protein compare
ABIE53_001971 -1.3 -2.8 hypothetical protein compare
ABIE53_003541 -1.3 -6.6 RNAse (barnase) inhibitor barstar compare
ABIE53_002947 -1.3 -1.3 simple sugar transport system ATP-binding protein compare
ABIE53_004307 -1.3 -2.5 hypothetical protein compare
ABIE53_004065 -1.3 -1.3 fructose transport system substrate-binding protein compare
ABIE53_005395 -1.3 -2.6 hypothetical protein compare
ABIE53_005808 -1.3 -3.1 AraC-like DNA-binding protein compare
ABIE53_000683 -1.3 -7.4 protoheme IX farnesyltransferase compare
ABIE53_001477 -1.3 -2.0 hypothetical protein compare
ABIE53_001607 -1.3 -2.4 putative DNA-binding transcriptional regulator AlpA compare
ABIE53_004852 -1.3 -8.8 DNA polymerase-1 compare
ABIE53_003044 -1.3 -2.7 hypothetical protein compare
ABIE53_001197 -1.2 -1.7 urease subunit beta compare
ABIE53_001312 -1.2 -5.5 transcriptional regulator with XRE-family HTH domain compare
ABIE53_002101 -1.2 -5.2 two-component system phosphate regulon response regulator OmpR compare
ABIE53_005752 -1.2 -4.7 DNA-binding PadR family transcriptional regulator compare
ABIE53_002794 -1.2 -3.1 PAS domain S-box-containing protein compare
ABIE53_000288 -1.2 -6.1 carboxylate-amine ligase compare
ABIE53_004402 -1.2 -2.6 multiple sugar transport system permease protein compare
ABIE53_001135 -1.2 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
ABIE53_001503 -1.2 -3.4 FixJ family two-component response regulator compare
ABIE53_003337 -1.2 -4.8 EAL domain-containing protein (putative c-di-GMP-specific phosphodiesterase class I) compare
ABIE53_006300 -1.2 -1.6 hypothetical protein compare
ABIE53_006363 -1.2 -2.4 uncharacterized protein YciI compare
ABIE53_003936 -1.2 -1.1 type VI secretion system protein ImpF compare
ABIE53_001994 -1.2 -5.3 LysR family cys regulon transcriptional activator compare
ABIE53_001421 -1.2 -1.5 cytochrome c553 compare
ABIE53_000236 -1.2 -5.1 aminomethyltransferase compare
ABIE53_001686 -1.2 -2.7 putative ATP-binding cassette transporter compare
ABIE53_002832 -1.1 -2.1 hypothetical protein compare
ABIE53_006133 -1.1 -3.1 electron transfer flavoprotein alpha subunit compare
ABIE53_002242 -1.1 -1.7 hypothetical protein compare
ABIE53_003687 -1.1 -8.4 serine protease DegQ compare
ABIE53_000413 -1.1 -3.5 methionine biosynthesis protein MetW compare
ABIE53_001846 -1.1 -3.1 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_000153 -1.1 -8.1 O-antigen ligase compare
ABIE53_005821 -1.1 -1.0 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_003689 -1.1 -5.6 sec-independent protein translocase protein TatB compare
ABIE53_003186 -1.1 -4.7 disulfide bond formation protein DsbB compare
ABIE53_000608 -1.1 -3.8 DNA-binding IclR family transcriptional regulator compare
ABIE53_002729 -1.1 -3.9 KUP system potassium uptake protein compare
ABIE53_003361 -1.0 -4.8 integrase/recombinase XerD compare
ABIE53_000682 -1.0 -6.5 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_002805 -1.0 -5.9 two-component system nitrogen regulation sensor histidine kinase GlnL compare
ABIE53_004858 -1.0 -2.9 farnesyl diphosphate synthase compare
ABIE53_003688 -1.0 -8.1 sec-independent protein translocase protein TatC compare
ABIE53_004408 -1.0 -1.2 hypothetical protein compare
ABIE53_000598 -1.0 -3.6 thiol:disulfide interchange protein DsbA compare
ABIE53_002233 -1.0 -2.3 LysR family transcriptional activator of nhaA compare
ABIE53_005978 -1.0 -1.9 sporulation protein YlmC with PRC-barrel domain compare
ABIE53_000680 -1.0 -5.2 surfeit locus 1 family protein compare
ABIE53_001990 -1.0 -5.9 sulfate/thiosulfate-binding protein compare
ABIE53_002804 -1.0 -4.6 two-component system nitrogen regulation response regulator GlnG compare
ABIE53_000650 -1.0 -4.9 thiol-disulfide isomerase/thioredoxin compare
ABIE53_003571 -1.0 -1.2 thiol peroxidase compare
ABIE53_000681 -0.9 -7.1 cytochrome oxidase Cu insertion factor (SCO1/SenC/PrrC family) compare
ABIE53_000238 -0.9 -8.1 glycine dehydrogenase compare
ABIE53_004304 -0.9 -4.4 putative membrane protein compare
ABIE53_006252 -0.9 -2.0 fumarylacetoacetate (FAA) hydrolase family protein compare
ABIE53_002788 -0.9 -4.8 IclR family KDG regulon transcriptional repressor compare
ABIE53_000858 -0.9 -5.5 heat-inducible transcriptional repressor compare
ABIE53_002588 -0.9 -2.6 membrane fusion protein (multidrug efflux system) compare
ABIE53_000290 -0.9 -6.8 Kef-type K+ transport system membrane component KefB compare
ABIE53_000289 -0.9 -2.6 hypothetical protein compare
ABIE53_001161 -0.9 -3.3 nucleoside-diphosphate-sugar epimerase compare
ABIE53_000045 -0.9 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_001667 -0.9 -2.9 hypothetical protein compare
ABIE53_003465 -0.9 -4.0 DeoR family glycerol-3-phosphate regulon repressor compare
ABIE53_004068 -0.9 -1.8 putative NBD/HSP70 family sugar kinase compare
ABIE53_004658 -0.9 -1.4 hypothetical protein compare
ABIE53_003287 -0.9 -4.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_005141 -0.9 -1.4 putative spermidine/putrescine transport system permease protein compare
ABIE53_002600 -0.9 -2.5 simple sugar transport system ATP-binding protein compare
ABIE53_004461 -0.9 -2.4 CheY-like chemotaxis protein compare
ABIE53_001854 -0.8 -1.7 nitrite reductase (NADH) small subunit compare
ABIE53_002633 -0.8 -1.7 microcystin degradation protein MlrC compare
ABIE53_006376 -0.8 -0.9 protein TonB compare
ABIE53_002740 -0.8 -2.2 putative negative regulator of RcsB-dependent stress response compare
ABIE53_004701 -0.8 -6.1 membrane protein DedA with SNARE-associated domain/rhodanese-related sulfurtransferase compare
ABIE53_000282 -0.8 -5.1 two-component system OmpR family response regulator compare
ABIE53_001902 -0.8 -2.8 ribose transport system ATP-binding protein compare
ABIE53_001420 -0.8 -2.7 cytochrome c553 compare
ABIE53_000701 -0.8 -2.7 16S rRNA (guanine966-N2)-methyltransferase compare
ABIE53_006241 -0.8 -1.5 sulfonate transport system ATP-binding protein compare
ABIE53_005959 -0.8 -1.6 hypothetical protein compare
ABIE53_003957 -0.8 -2.0 putative deacylase compare
ABIE53_005242 -0.8 -3.1 putative membrane protein YqjE compare
ABIE53_002698 -0.8 -3.0 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_002801 -0.8 -1.9 hypothetical protein compare
ABIE53_006219 -0.8 -1.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Paraburkholderia graminis OAS925

For carbon source L-Malic acid disodium salt monohydrate across organisms