Experiment set1IT038 for Burkholderia phytofirmans PsJN

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
BPHYT_RS09515 -4.7 -6.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16245 -4.4 -8.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03640 -3.5 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS23840 -3.1 -3.4 methyltransferase compare
BPHYT_RS16255 -3.0 -7.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS12465 -2.8 -6.5 inositol monophosphatase compare
BPHYT_RS02865 -2.8 -4.3 hypothetical protein compare
BPHYT_RS14855 -2.7 -3.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06405 -2.5 -10.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS08960 -2.4 -1.9 threonine synthase compare
BPHYT_RS33840 -2.3 -8.6 amidophosphoribosyltransferase compare
BPHYT_RS17920 -2.3 -2.1 protein CyaY compare
BPHYT_RS33920 -2.1 -7.3 type II citrate synthase compare
BPHYT_RS02610 -2.1 -5.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS01485 -2.1 -1.6 histidine kinase compare
BPHYT_RS06975 -2.0 -3.3 glutamate racemase compare
BPHYT_RS08850 -2.0 -3.2 transcriptional regulator compare
BPHYT_RS16840 -1.9 -4.1 transketolase compare
BPHYT_RS15620 -1.9 -5.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS16270 -1.9 -6.3 phosphoglycerate kinase compare
BPHYT_RS05650 -1.9 -2.1 hypothetical protein compare
BPHYT_RS15415 -1.8 -11.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02860 -1.7 -1.4 membrane protein compare
BPHYT_RS04335 -1.7 -2.2 membrane protein compare
BPHYT_RS07540 -1.6 -1.4 hypothetical protein compare
BPHYT_RS06175 -1.6 -4.2 LPS biosynthesis compare
BPHYT_RS06530 -1.6 -1.9 membrane protein compare
BPHYT_RS30490 -1.6 -1.2 2-haloalkanoic acid dehalogenase compare
BPHYT_RS04370 -1.6 -2.4 glycosyl transferase compare
BPHYT_RS02590 -1.6 -6.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS03725 -1.6 -1.8 serine hydroxymethyltransferase compare
BPHYT_RS27175 -1.6 -1.3 DNA-binding protein compare
BPHYT_RS08565 -1.6 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS18590 -1.5 -1.2 hypothetical protein compare
BPHYT_RS03480 -1.5 -5.0 ferritin compare
BPHYT_RS17520 -1.5 -4.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS04290 -1.5 -2.5 glycosyl transferase family 2 compare
BPHYT_RS16835 -1.5 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14865 -1.4 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06685 -1.4 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS21130 -1.4 -3.6 F420-dependent oxidoreductase compare
BPHYT_RS14140 -1.4 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS06610 -1.4 -2.4 triosephosphate isomerase compare
BPHYT_RS28830 -1.4 -1.5 LysR family transcriptional regulator compare
BPHYT_RS06990 -1.4 -1.8 membrane protein compare
BPHYT_RS14845 -1.3 -1.9 cysteine synthase compare
BPHYT_RS12845 -1.3 -10.1 ATPase compare
BPHYT_RS19675 -1.3 -1.8 hypothetical protein compare
BPHYT_RS17530 -1.3 -5.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17525 -1.2 -2.3 glutaredoxin compare
BPHYT_RS25335 -1.2 -1.1 hypothetical protein compare
BPHYT_RS11635 -1.2 -1.1 RNA polymerase subunit sigma-24 compare
BPHYT_RS02965 -1.2 -2.7 membrane protein compare
BPHYT_RS18765 -1.2 -5.0 flagellar biosynthesis protein FliS compare
BPHYT_RS05905 -1.2 -1.0 hypothetical protein compare
BPHYT_RS12840 -1.2 -3.0 pyruvate dehydrogenase compare
BPHYT_RS36275 -1.2 -1.8 hypothetical protein compare
BPHYT_RS30465 -1.2 -1.3 short-chain dehydrogenase compare
BPHYT_RS23270 -1.1 -1.4 enoyl-CoA hydratase compare
BPHYT_RS11745 -1.1 -1.5 (2Fe-2S)-binding protein compare
BPHYT_RS30995 -1.1 -1.0 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS04965 -1.1 -4.8 ATP-binding protein compare
BPHYT_RS10305 -1.1 -1.9 hypothetical protein compare
BPHYT_RS24925 -1.1 -1.5 cytochrome O ubiquinol oxidase compare
BPHYT_RS06105 -1.1 -1.4 hypothetical protein compare
BPHYT_RS14245 -1.1 -1.5 membrane protein compare
BPHYT_RS35955 -1.0 -1.7 hypothetical protein compare
BPHYT_RS06075 -1.0 -4.9 hypothetical protein compare
BPHYT_RS17095 -1.0 -3.1 proline--tRNA ligase compare
BPHYT_RS29085 -1.0 -1.5 LysR family transcriptional regulator compare
BPHYT_RS22910 -1.0 -1.3 hypothetical protein compare
BPHYT_RS06335 -1.0 -1.2 CopG family transcriptional regulator compare
BPHYT_RS33245 -1.0 -3.5 hypothetical protein compare
BPHYT_RS23230 -1.0 -1.4 histidine kinase compare
BPHYT_RS04385 -1.0 -2.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06375 -1.0 -4.2 ribonuclease compare
BPHYT_RS26080 -1.0 -1.4 ABC transporter ATPase compare
BPHYT_RS04890 -1.0 -1.3 cobalamin biosynthesis protein CobD compare
BPHYT_RS35120 -1.0 -1.8 hypothetical protein compare
BPHYT_RS05155 -0.9 -2.9 acetyltransferase GCN5 compare
BPHYT_RS31400 -0.9 -1.0 methyl-accepting chemotaxis protein compare
BPHYT_RS15615 -0.9 -3.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS16065 -0.9 -1.0 LacI family transcriptional regulator compare
BPHYT_RS09330 -0.9 -5.8 phytoene synthase compare
BPHYT_RS33580 -0.9 -3.2 geranyltranstransferase compare
BPHYT_RS27720 -0.9 -1.3 hypothetical protein compare
BPHYT_RS29695 -0.9 -1.6 hypothetical protein compare
BPHYT_RS12990 -0.9 -2.3 iron transporter compare
BPHYT_RS04140 -0.9 -1.9 polysaccharide biosynthesis protein compare
BPHYT_RS10690 -0.9 -1.4 Rieske (2Fe-2S) protein compare
BPHYT_RS08945 -0.9 -4.2 hypothetical protein compare
BPHYT_RS19610 -0.9 -1.4 general secretion pathway protein GspC compare
BPHYT_RS31785 -0.9 -2.4 hypothetical protein compare
BPHYT_RS07925 -0.9 -2.0 glutamine amidotransferase compare
BPHYT_RS23910 -0.9 -1.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS18760 -0.9 -2.1 flagellar biosynthesis protein FliT compare
BPHYT_RS14735 -0.9 -1.0 hypothetical protein compare
BPHYT_RS07570 -0.9 -1.2 hypothetical protein compare
BPHYT_RS02595 -0.9 -1.3 sulfurtransferase compare
BPHYT_RS21925 -0.9 -2.1 formimidoylglutamase compare
BPHYT_RS17265 -0.9 -1.3 cell division protein compare
BPHYT_RS28305 -0.9 -1.5 protein tyrosine phosphatase compare
BPHYT_RS21770 -0.9 -1.6 aldehyde dehydrogenase compare
BPHYT_RS08825 -0.8 -1.3 tartronate semialdehyde reductase compare
BPHYT_RS21725 -0.8 -1.2 taurine ABC transporter substrate-binding protein compare
BPHYT_RS16345 -0.8 -2.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16675 -0.8 -1.2 dihydroorotase compare
BPHYT_RS27370 -0.8 -1.4 CoA transferase compare
BPHYT_RS17240 -0.8 -1.0 cell division protein FtsW compare
BPHYT_RS34810 -0.8 -2.1 RND transporter compare
BPHYT_RS12725 -0.8 -5.5 regulator compare
BPHYT_RS20695 -0.8 -2.2 ribokinase compare
BPHYT_RS24315 -0.8 -1.2 phosphoribosyltransferase compare
BPHYT_RS18910 -0.8 -1.0 FlgN compare
BPHYT_RS09145 -0.8 -5.4 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS25270 -0.8 -2.1 multidrug MFS transporter compare
BPHYT_RS27920 -0.8 -1.1 tricarballylate utilization protein B compare
BPHYT_RS12985 -0.8 -2.1 amino acid acetyltransferase compare
BPHYT_RS23225 -0.8 -1.6 hypothetical protein compare
BPHYT_RS10095 -0.8 -1.4 integrase compare
BPHYT_RS14755 -0.8 -2.2 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS08995 -0.8 -0.9 hypothetical protein compare
BPHYT_RS14195 -0.8 -2.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS34430 -0.8 -0.8 2-keto-4-pentenoate hydratase compare
BPHYT_RS14125 -0.8 -1.3 transcriptional regulator compare
BPHYT_RS20905 -0.8 -1.1 hypothetical protein compare
BPHYT_RS11540 -0.8 -1.7 ureidoglycolate hydrolase compare
BPHYT_RS14135 -0.8 -2.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS09860 -0.8 -0.9 pilus assembly protein PilP compare
BPHYT_RS25870 -0.8 -0.8 type III secretion system ATPase compare
BPHYT_RS13645 -0.8 -6.0 threonine--tRNA ligase compare
BPHYT_RS22815 -0.8 -1.3 TonB-denpendent receptor compare
BPHYT_RS20725 -0.8 -0.9 histidine kinase compare
BPHYT_RS31615 -0.8 -2.0 thiamine pyrophosphate protein compare
BPHYT_RS25065 -0.8 -1.1 glycine/betaine ABC transporter ATPase compare
BPHYT_RS06350 -0.8 -1.1 chemotaxis protein CheY compare
BPHYT_RS16290 -0.7 -0.9 hypothetical protein compare
BPHYT_RS36525 -0.7 -2.6 hypothetical protein compare
BPHYT_RS12825 -0.7 -1.5 phasin family protein compare
BPHYT_RS25955 -0.7 -1.7 transcriptional regulator compare
BPHYT_RS20085 -0.7 -0.9 mannosyltransferase compare
BPHYT_RS24630 -0.7 -2.0 (2Fe-2S)-binding protein compare
BPHYT_RS06600 -0.7 -1.3 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS28680 -0.7 -1.8 porin compare
BPHYT_RS08125 -0.7 -4.2 ATPase compare
BPHYT_RS06410 -0.7 -1.7 transcriptional regulator compare
BPHYT_RS16340 -0.7 -3.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS11705 -0.7 -1.2 hypothetical protein compare
BPHYT_RS22420 -0.7 -0.9 membrane protein compare
BPHYT_RS14585 -0.7 -1.6 hypothetical protein compare
BPHYT_RS26975 -0.7 -1.6 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS12550 -0.7 -0.8 GTP-binding protein HflX compare
BPHYT_RS28595 -0.7 -1.0 glyoxalase compare
BPHYT_RS08765 -0.7 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS28535 -0.7 -0.9 response regulator receiver compare
BPHYT_RS23100 -0.7 -1.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS16215 -0.7 -2.0 sensor histidine kinase compare
BPHYT_RS33150 -0.7 -0.8 beta-lactamase compare
BPHYT_RS28365 -0.7 -1.1 Germin subfamily 1 member 15 compare
BPHYT_RS07960 -0.7 -1.3 hypothetical protein compare
BPHYT_RS09620 -0.7 -1.3 aminodeoxychorismate lyase compare
BPHYT_RS33885 -0.7 -4.9 tRNA pseudouridine synthase A compare
BPHYT_RS08245 -0.7 -2.5 anti-sigma factor compare
BPHYT_RS18255 -0.7 -1.1 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS30990 -0.7 -1.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS14380 -0.7 -2.8 elongation factor 4 compare
BPHYT_RS03025 -0.7 -2.0 methyl-accepting chemotaxis protein compare
BPHYT_RS24510 -0.7 -1.5 alkylphosphonate utilization protein compare
BPHYT_RS17890 -0.7 -1.5 shikimate kinase compare
BPHYT_RS11360 -0.7 -1.2 hypothetical protein compare
BPHYT_RS04675 -0.7 -3.5 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS16475 -0.7 -2.0 hypothetical protein compare
BPHYT_RS06510 -0.7 -1.8 DeoR faimly transcriptional regulator compare
BPHYT_RS04015 -0.7 -1.2 glycosyl transferase compare
BPHYT_RS28370 -0.7 -0.9 peroxidase compare
BPHYT_RS28930 -0.7 -0.7 chromosome partitioning protein ParA compare
BPHYT_RS02525 -0.7 -3.9 membrane protein compare
BPHYT_RS26685 -0.7 -0.9 precorrin-8X methylmutase compare
BPHYT_RS09385 -0.7 -0.8 FAD-dependent oxidoreductase compare
BPHYT_RS28470 -0.7 -1.2 hypothetical protein compare
BPHYT_RS14450 -0.7 -1.8 hypothetical protein compare
BPHYT_RS29035 -0.7 -1.1 arsenic transporter compare
BPHYT_RS06250 -0.7 -2.9 pilus assembly protein PapD compare
BPHYT_RS10135 -0.7 -0.8 hypothetical protein compare
BPHYT_RS23435 -0.7 -1.2 MFS transporter compare
BPHYT_RS04955 -0.6 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS22135 -0.6 -1.3 3-ketoacyl-ACP reductase compare
BPHYT_RS21485 -0.6 -0.8 hypothetical protein compare
BPHYT_RS26305 -0.6 -1.3 exonuclease compare
BPHYT_RS22465 -0.6 -1.3 zinc carboxypeptidase-like protein compare
BPHYT_RS06985 -0.6 -2.6 fumarate hydratase compare
BPHYT_RS13200 -0.6 -1.0 molybdopterin binding oxidoreductase compare
BPHYT_RS29805 -0.6 -1.3 lysine transporter LysE compare
BPHYT_RS17445 -0.6 -1.8 GTP-binding protein YchF compare
BPHYT_RS26880 -0.6 -1.7 ketosteroid isomerase compare
BPHYT_RS33645 -0.6 -3.1 homoserine kinase compare
BPHYT_RS32435 -0.6 -1.3 formate dehydrogenase-N subunit beta compare
BPHYT_RS03730 -0.6 -1.2 transcriptional repressor NrdR compare
BPHYT_RS36360 -0.6 -1.7 hypothetical protein compare
BPHYT_RS27270 -0.6 -1.7 photosystem reaction center subunit H compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in lb experiments