Experiment set1IT037 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium fluoride 12.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.7 -5.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_300 -3.8 -5.8 CrcB protein conserved
Pf6N2E2_4369 -3.3 -3.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3460 -2.6 -2.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4352 -2.5 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4072 -1.8 -5.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4162 -1.8 -3.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4077 -1.8 -2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1315 -1.7 -3.0 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5086 -1.6 -2.2 hypothetical protein compare
Pf6N2E2_1246 -1.5 -2.4 FIG00961372: hypothetical protein compare
Pf6N2E2_3351 -1.5 -5.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4638 -1.4 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4353 -1.3 -4.6 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2217 -1.3 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5660 -1.3 -6.1 L-Arginine ABC transporter, periplasmic substrate-binding component (from data) compare
Pf6N2E2_4074 -1.3 -9.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2473 -1.2 -1.8 Major outer membrane lipoprotein I compare
Pf6N2E2_5527 -1.2 -2.0 Cold shock protein CspC compare
Pf6N2E2_4075 -1.1 -4.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2756 -1.1 -6.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5662 -1.1 -7.4 L-Arginine ABC transporter, permease protein AotM (from data) compare
Pf6N2E2_2794 -1.1 -2.2 putative membrane protein compare
Pf6N2E2_3349 -1.1 -2.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5663 -1.1 -4.3 L-Arginine ABC transporter, ATPase component (from data) compare
Pf6N2E2_3461 -1.0 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_156 -1.0 -2.6 Carbon storage regulator compare
Pf6N2E2_3062 -1.0 -3.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2753 -1.0 -2.9 HtrA protease/chaperone protein compare
Pf6N2E2_3271 -1.0 -2.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_4206 -1.0 -2.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4159 -1.0 -4.2 Cytochrome c4 compare
Pf6N2E2_623 -1.0 -1.4 FIG00954674: hypothetical protein compare
Pf6N2E2_241 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3607 -0.9 -5.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4071 -0.9 -3.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3770 -0.9 -2.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4597 -0.9 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_546 -0.9 -2.1 FIG00966904: hypothetical protein compare
Pf6N2E2_5761 -0.9 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_5661 -0.9 -3.9 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_302 -0.9 -3.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3611 -0.9 -1.7 HflC protein compare
Pf6N2E2_2313 -0.9 -2.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1705 -0.9 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_621 -0.8 -4.6 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5967 -0.8 -2.6 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4591 -0.8 -3.3 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_5508 -0.8 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4971 -0.8 -5.5 Transcriptional regulator compare
Pf6N2E2_5766 -0.8 -1.4 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_613 -0.8 -1.5 lipoprotein, putative compare
Pf6N2E2_1821 -0.8 -1.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4025 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_2310 -0.8 -4.9 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2285 -0.7 -1.3 FIG00954079: hypothetical protein compare
Pf6N2E2_2062 -0.7 -2.2 FIG00955561: hypothetical protein compare
Pf6N2E2_5567 -0.7 -2.4 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_2320 -0.7 -1.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5902 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_6164 -0.7 -1.1 tRNA-Val-TAC compare
Pf6N2E2_1435 -0.7 -2.2 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_28 -0.7 -1.5 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_77 -0.7 -3.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_2927 -0.7 -1.7 Putative signal peptide protein compare
Pf6N2E2_3786 -0.7 -1.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_3533 -0.7 -2.8 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_2059 -0.7 -1.9 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1917 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_2309 -0.7 -2.7 hypothetical protein compare
Pf6N2E2_127 -0.7 -1.4 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_4204 -0.7 -1.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5319 -0.7 -4.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_319 -0.7 -3.1 DUF1850 domain-containing protein compare
Pf6N2E2_4197 -0.7 -5.1 DNA recombination and repair protein RecF compare
Pf6N2E2_3277 -0.7 -2.2 FagA protein compare
Pf6N2E2_1281 -0.7 -1.5 ATPase involved in DNA repair compare
Pf6N2E2_5255 -0.7 -4.4 Outer membrane stress sensor protease DegS compare
Pf6N2E2_178 -0.7 -0.9 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3255 -0.7 -1.8 YrbA protein compare
Pf6N2E2_5536 -0.7 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5320 -0.7 -4.6 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2999 -0.7 -1.6 probable tail fiber assembly protein compare
Pf6N2E2_4596 -0.7 -4.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_2068 -0.6 -3.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_1506 -0.6 -2.0 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2640 -0.6 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_4886 -0.6 -5.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2413 -0.6 -1.5 FIG074102: hypothetical protein compare
Pf6N2E2_1817 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_1749 -0.6 -2.3 Cyn operon transcriptional activator compare
Pf6N2E2_622 -0.6 -2.6 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2852 -0.6 -3.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_4416 -0.6 -1.8 Tyrosine recombinase XerC compare
Pf6N2E2_4092 -0.6 -2.2 FIG00954395: hypothetical protein compare
Pf6N2E2_3872 -0.6 -1.6 hypothetical protein compare
Pf6N2E2_5321 -0.6 -4.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2428 -0.6 -2.0 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5756 -0.6 -2.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4163 -0.6 -2.5 FIG00953549: hypothetical protein compare
Pf6N2E2_1606 -0.6 -3.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2318 -0.6 -3.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_624 -0.6 -3.3 hypothetical protein PA3071 compare
Pf6N2E2_476 -0.6 -1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2527 -0.6 -2.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5430 -0.6 -3.6 Transglycosylase, Slt family compare
Pf6N2E2_6065 -0.6 -1.1 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5531 -0.6 -2.7 hypothetical protein compare
Pf6N2E2_4609 -0.6 -2.1 UPF0301 protein YqgE compare
Pf6N2E2_4372 -0.6 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_5758 -0.6 -1.7 FIG00957314: hypothetical protein compare
Pf6N2E2_43 -0.6 -2.4 Histidine permease YuiF compare
Pf6N2E2_5560 -0.6 -2.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_642 -0.6 -1.9 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_3213 -0.6 -3.5 DNA-binding response regulator, AraC family compare
Pf6N2E2_4987 -0.6 -0.9 MaoC-like domain protein compare
Pf6N2E2_4273 -0.6 -3.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2534 -0.6 -1.9 Cell division protein BolA compare
Pf6N2E2_2896 -0.6 -2.2 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_2716 -0.6 -1.6 FIG00954793: hypothetical protein compare
Pf6N2E2_3095 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_4305 -0.6 -1.1 FIG00959590: hypothetical protein compare
Pf6N2E2_138 -0.6 -2.2 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Pf6N2E2_3632 -0.6 -3.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5605 -0.6 -1.5 FxsA protein compare
Pf6N2E2_447 -0.6 -2.8 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_2930 -0.5 -2.6 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf6N2E2_6070 -0.5 -1.4 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_3984 -0.5 -4.3 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3283 -0.5 -2.6 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_660 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_3537 -0.5 -2.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_799 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_6140 -0.5 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1714 -0.5 -1.6 FIG01218476: hypothetical protein compare
Pf6N2E2_2311 -0.5 -3.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2155 -0.5 -2.7 hypothetical protein compare
Pf6N2E2_3876 -0.5 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2373 -0.5 -1.9 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_1099 -0.5 -1.3 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5510 -0.5 -1.0 FIG00955324: hypothetical protein compare
Pf6N2E2_5242 -0.5 -0.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_1037 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_3517 -0.5 -3.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_3532 -0.5 -3.2 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_4765 -0.5 -3.0 FIG00954771: hypothetical protein compare
Pf6N2E2_775 -0.5 -2.1 FIG00955061: hypothetical protein compare
Pf6N2E2_3504 -0.5 -3.8 Biosynthetic arginine decarboxylase (EC 4.1.1.19) compare
Pf6N2E2_5272 -0.5 -1.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_4276 -0.5 -2.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2065 -0.5 -2.0 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5331 -0.5 -3.0 ATPase, AFG1 family compare
Pf6N2E2_3370 -0.5 -3.8 DNA repair protein RecN compare
Pf6N2E2_2992 -0.5 -1.8 Regulatory protein RecX compare
Pf6N2E2_1182 -0.5 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_155 -0.5 -2.0 Probable transmembrane protein compare
Pf6N2E2_906 -0.5 -1.9 ISPpu14, transposase Orf2 compare
Pf6N2E2_2777 -0.5 -3.2 Urea carboxylase-related ABC transporter, ATPase protein compare
Pf6N2E2_3589 -0.5 -1.7 Lysine decarboxylase family compare
Pf6N2E2_1276 -0.5 -2.8 FIG00958406: hypothetical protein compare
Pf6N2E2_5318 -0.5 -4.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_841 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_5723 -0.5 -3.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_1434 -0.5 -1.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_33 -0.5 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1989 -0.5 -1.5 hypothetical protein compare
Pf6N2E2_5428 -0.5 -2.6 DNA recombination and repair protein RecO compare
Pf6N2E2_4427 -0.5 -1.6 FIG00954215: hypothetical protein compare
Pf6N2E2_189 -0.5 -1.3 regulatory protein, putative compare
Pf6N2E2_5339 -0.5 -2.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2121 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_5329 -0.5 -1.8 Alpha/beta hydrolase compare
Pf6N2E2_723 -0.5 -1.9 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_719 -0.5 -1.0 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_4545 -0.5 -1.2 hypothetical protein compare
Pf6N2E2_5452 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_1288 -0.5 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_423 -0.5 -1.1 Putative phosphatase YfbT compare
Pf6N2E2_3568 -0.5 -1.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_1870 -0.5 -1.3 hypothetical protein compare
Pf6N2E2_504 -0.5 -1.3 DNA-binding response regulator compare
Pf6N2E2_639 -0.5 -2.0 FIG01285020: hypothetical protein compare
Pf6N2E2_4439 -0.5 -3.3 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Pf6N2E2_3192 -0.5 -1.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4636 -0.5 -3.0 periplasmic binding protein, putative compare
Pf6N2E2_1699 -0.5 -1.2 FIG00955832: hypothetical protein compare
Pf6N2E2_70 -0.5 -1.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1512 -0.4 -1.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_5337 -0.4 -2.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2064 -0.4 -1.9 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_2041 -0.4 -1.1 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf6N2E2_2363 -0.4 -1.6 Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components) compare
Pf6N2E2_335 -0.4 -2.3 Aldo-keto reductase compare
Pf6N2E2_1141 -0.4 -1.4 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_487 -0.4 -2.2 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
Pf6N2E2_2128 -0.4 -1.5 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1450 -0.4 -1.2 FIG00960438: hypothetical protein compare
Pf6N2E2_3828 -0.4 -1.3 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_5317 -0.4 -3.4 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_1330 -0.4 -1.6 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare


Specific Phenotypes

For 2 genes in this experiment

For stress sodium fluoride in Pseudomonas fluorescens FW300-N2E2

For stress sodium fluoride across organisms