Experiment set1IT037 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08855 -6.5 -3.5 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07665 -5.8 -29.5 formate dehydrogenase subunit alpha compare
MMJJ_RS07670 -5.6 -20.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06600 -5.4 -3.0 DUF555 domain-containing protein compare
MMJJ_RS02055 -5.4 -13.9 GTP 3',8-cyclase MoaA compare
MMJJ_RS08005 -5.4 -21.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07655 -5.3 -15.3 hypothetical protein compare
MMJJ_RS03065 -5.2 -15.0 CBS domain-containing protein compare
MMJJ_RS05155 -5.2 -6.1 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS06860 -5.1 -3.5 hypothetical protein compare
MMJJ_RS07660 -4.9 -12.5 carbonic anhydrase compare
MMJJ_RS00580 -4.9 -2.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00055 -4.9 -13.5 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00050 -4.8 -14.1 AAA family ATPase compare
MMJJ_RS06725 -4.8 -10.3 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05445 -4.8 -2.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS07995 -4.8 -8.1 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00645 -4.7 -10.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06260 -4.7 -9.4 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00275 -4.6 -2.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00450 -4.6 -2.2 DUF126 domain-containing protein compare
MMJJ_RS06265 -4.6 -15.4 8-amino-7-oxononanoate synthase compare
MMJJ_RS04050 -4.5 -1.9 dihydroneopterin aldolase family protein compare
MMJJ_RS00070 -4.5 -3.7 CooT family nickel-binding protein compare
MMJJ_RS05575 -4.5 -4.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS04485 -4.5 -12.1 riboflavin synthase compare
MMJJ_RS08080 -4.5 -8.0 TIGR00300 family protein compare
MMJJ_RS05535 -4.4 -14.8 hypothetical protein compare
MMJJ_RS02920 -4.4 -2.1 30S ribosomal protein S27ae compare
MMJJ_RS06155 -4.4 -4.3 phosphatidylglycerophosphatase A compare
MMJJ_RS00040 -4.4 -10.5 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS00060 -4.4 -21.4 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS06375 -4.4 -3.0 UbiX family flavin prenyltransferase compare
MMJJ_RS00935 -4.3 -18.6 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS06240 -4.3 -2.6 dihydropteroate synthase-like protein compare
MMJJ_RS06855 -4.2 -1.8 DUF2104 domain-containing protein compare
MMJJ_RS00045 -4.2 -20.3 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03920 -4.2 -17.4 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00075 -4.2 -15.9 AAA family ATPase compare
MMJJ_RS00370 -4.2 -2.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS06915 -4.2 -17.7 helix-turn-helix domain-containing protein compare
MMJJ_RS08035 -4.2 -9.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS07980 -4.1 -15.1 biotin synthase BioB compare
MMJJ_RS03620 -4.1 -4.8 DUF2097 domain-containing protein compare
MMJJ_RS00035 -4.1 -20.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS08625 -4.1 -2.8 magnesium/cobalt transporter CorA compare
MMJJ_RS01750 -4.1 -2.4 ferrous iron transport protein A compare
MMJJ_RS07975 -4.1 -12.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS07720 -4.1 -1.9 UPF0058 family protein compare
MMJJ_RS06270 -4.1 -8.6 dethiobiotin synthase compare
MMJJ_RS03115 -4.1 -8.0 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS04595 -4.1 -5.9 hypothetical protein compare
MMJJ_RS03580 -4.1 -2.8 TIGR00303 family protein compare
MMJJ_RS04685 -4.1 -7.7 carbamoyltransferase HypF compare
MMJJ_RS07160 -4.0 -21.8 M20 family metallo-hydrolase compare
MMJJ_RS04475 -4.0 -6.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03895 -4.0 -3.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS04200 -4.0 -7.0 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06490 -4.0 -2.6 methanogenesis marker 2 protein compare
MMJJ_RS00065 -4.0 -10.6 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS02200 -3.9 -7.9 chorismate pyruvate-lyase family protein compare
MMJJ_RS04800 -3.9 -4.6 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS07650 -3.9 -23.8 formate/nitrite transporter family protein compare
MMJJ_RS06930 -3.9 -3.2 type II methionyl aminopeptidase compare
MMJJ_RS03500 -3.9 -12.4 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS04155 -3.9 -4.6 hypothetical protein compare
MMJJ_RS07245 -3.8 -5.8 amidohydrolase family protein compare
MMJJ_RS01810 -3.8 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS02045 -3.8 -3.0 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03865 -3.8 -1.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06220 -3.8 -4.5 polyamine aminopropyltransferase compare
MMJJ_RS08000 -3.8 -8.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS08065 -3.8 -3.7 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS09135 -3.8 -12.4 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS03670 -3.8 -2.6 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06875 -3.8 -2.1 hypothetical protein compare
MMJJ_RS08095 -3.8 -3.6 cobyric acid synthase CobQ compare
MMJJ_RS04145 -3.8 -11.8 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS03200 -3.8 -2.0 uroporphyrinogen-III synthase compare
MMJJ_RS03170 -3.8 -9.0 DUF5612 domain-containing protein compare
MMJJ_RS00355 -3.8 -2.4 ribonuclease P protein component 4 compare
MMJJ_RS07640 -3.7 -23.6 cache domain-containing protein compare
MMJJ_RS06700 -3.7 -6.9 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS03110 -3.7 -2.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08020 -3.7 -10.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06510 -3.7 -3.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS05995 -3.7 -2.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS07350 -3.7 -3.4 4Fe-4S binding protein compare
MMJJ_RS08155 -3.6 -4.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03005 -3.6 -2.5 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07635 -3.6 -13.9 response regulator transcription factor compare
MMJJ_RS08840 -3.6 -4.8 calcium/sodium antiporter compare
MMJJ_RS03055 -3.6 -3.1 hypothetical protein compare
MMJJ_RS06485 -3.6 -2.4 phosphoglycerate kinase compare
MMJJ_RS07950 -3.6 -2.3 4Fe-4S binding protein compare
MMJJ_RS01935 -3.6 -4.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS00570 -3.5 -1.4 ribonuclease P compare
MMJJ_RS04995 -3.5 -4.7 Tfx family DNA-binding protein compare
MMJJ_RS07725 -3.5 -7.8 DNA primase DnaG compare
MMJJ_RS07470 -3.5 -2.3 50S ribosome-binding GTPase compare
MMJJ_RS06010 -3.5 -8.3 hypothetical protein compare
MMJJ_RS06180 -3.4 -2.4 tryptophan--tRNA ligase compare
MMJJ_RS06040 -3.4 -3.3 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08535 -3.4 -3.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS05190 -3.4 -8.6 gamma carbonic anhydrase family protein compare
MMJJ_RS05070 -3.4 -1.8 DNA primase catalytic subunit PriS compare
MMJJ_RS09190 -3.4 -1.9 tryptophan synthase subunit beta compare
MMJJ_RS03490 -3.4 -3.0 ribonuclease VapC compare
MMJJ_RS06695 -3.4 -2.1 amidohydrolase compare
MMJJ_RS00125 -3.4 -2.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS04970 -3.3 -1.6 DUF655 domain-containing protein compare
MMJJ_RS00080 -3.3 -14.3 DUF166 domain-containing protein compare
MMJJ_RS04700 -3.3 -6.8 deoxyhypusine synthase compare
MMJJ_RS01600 -3.3 -2.1 radical SAM protein compare
MMJJ_RS08330 -3.3 -3.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00560 -3.3 -3.8 homoisocitrate dehydrogenase compare
MMJJ_RS06715 -3.3 -10.9 lactaldehyde dehydrogenase compare
MMJJ_RS03150 -3.3 -7.0 2-phospho-L-lactate transferase compare
MMJJ_RS03270 -3.3 -2.2 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07785 -3.2 -2.1 fumarate reductase subunit A compare
MMJJ_RS06625 -3.2 -1.5 pyruvate synthase subunit PorB compare
MMJJ_RS08850 -3.2 -1.9 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05490 -3.2 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00205 -3.1 -6.5 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06110 -3.1 -1.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS03965 -3.1 -2.1 DNA-directed RNA polymerase subunit L compare
MMJJ_RS08010 -3.1 -8.2 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS05810 -3.1 -3.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04975 -3.1 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS03190 -3.1 -2.1 phosphopyruvate hydratase compare
MMJJ_RS06390 -3.1 -1.5 NADPH-dependent F420 reductase compare
MMJJ_RS06840 -3.1 -2.1 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01360 -3.1 -1.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03295 -3.1 -14.5 PHP domain-containing protein compare
MMJJ_RS03875 -3.1 -4.2 CBS domain-containing protein compare
MMJJ_RS04790 -3.1 -4.7 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS03060 -3.0 -3.9 methanogenesis marker 7 protein compare
MMJJ_RS08320 -3.0 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS05720 -3.0 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00270 -3.0 -2.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS00475 -3.0 -1.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04650 -3.0 -6.9 nitrogenase iron protein compare
MMJJ_RS02935 -3.0 -3.1 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS03760 -3.0 -3.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS05930 -3.0 -1.6 cell division protein SepF compare
MMJJ_RS03310 -3.0 -3.9 hypothetical protein compare
MMJJ_RS07430 -2.9 -3.7 ribonuclease VapC compare
MMJJ_RS02090 -2.9 -4.7 tyramine--L-glutamate ligase compare
MMJJ_RS07155 -2.9 -11.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06050 -2.9 -9.3 molybdopterin molybdotransferase MoeA compare
MMJJ_RS03095 -2.9 -1.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS06255 -2.9 -6.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05415 -2.9 -1.6 hypothetical protein compare
MMJJ_RS04150 -2.9 -2.7 DUF5379 domain-containing protein compare
MMJJ_RS05260 -2.9 -6.1 ATP-grasp domain-containing protein compare
MMJJ_RS05540 -2.9 -19.1 LysR family transcriptional regulator compare
MMJJ_RS00215 -2.9 -1.7 CCA tRNA nucleotidyltransferase compare
MMJJ_RS01860 -2.8 -14.8 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS00360 -2.8 -2.5 adenosylhomocysteinase compare
MMJJ_RS01415 -2.8 -2.3 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS03615 -2.8 -2.3 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06805 -2.8 -2.5 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS03125 -2.7 -5.1 GMC oxidoreductase compare
MMJJ_RS08250 -2.7 -6.7 hydrogenase maturation peptidase HycI compare
MMJJ_RS01880 -2.7 -2.9 RlmE family RNA methyltransferase compare
MMJJ_RS04980 -2.7 -5.2 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07265 -2.7 -13.2 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS06250 -2.7 -1.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS06015 -2.7 -12.9 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS09375 -2.7 -1.4 hypothetical protein compare
MMJJ_RS02190 -2.7 -12.3 molybdopterin biosynthesis protein compare
MMJJ_RS08055 -2.7 -7.2 methanogenesis marker 14 protein compare
MMJJ_RS06030 -2.6 -5.6 4Fe-4S binding protein compare
MMJJ_RS06175 -2.6 -2.2 DUF1743 domain-containing protein compare
MMJJ_RS04730 -2.6 -1.7 tyrosine decarboxylase MfnA compare
MMJJ_RS09175 -2.6 -0.9 anthranilate synthase component I compare
MMJJ_RS00425 -2.6 -4.6 hypothetical protein compare
MMJJ_RS06215 -2.6 -5.5 agmatinase compare
MMJJ_RS05375 -2.6 -14.0 radical SAM protein compare
MMJJ_RS05380 -2.6 -1.2 hypothetical protein compare
MMJJ_RS06910 -2.6 -1.5 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS04125 -2.6 -12.1 tRNA (guanine(10)-N(2))-dimethyltransferase compare
MMJJ_RS06000 -2.6 -5.4 cation:proton antiporter subunit C compare
MMJJ_RS06025 -2.6 -15.9 4Fe-4S binding protein compare
MMJJ_RS03660 -2.6 -3.6 DUF447 family protein compare
MMJJ_RS07355 -2.5 -4.2 MoaD/ThiS family protein compare
MMJJ_RS08405 -2.5 -13.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06905 -2.5 -2.3 hypothetical protein compare
MMJJ_RS06020 -2.5 -6.1 hypothetical protein compare
MMJJ_RS04520 -2.5 -6.1 coenzyme F430 synthase compare
MMJJ_RS06035 -2.5 -8.4 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS05330 -2.5 -2.1 DNA polymerase II large subunit compare
MMJJ_RS05950 -2.5 -3.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS05590 -2.5 -1.2 homoserine dehydrogenase compare
MMJJ_RS07415 -2.5 -2.4 polyprenyl diphosphate synthase compare
MMJJ_RS04675 -2.5 -7.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS06750 -2.5 -1.3 homoaconitase large subunit compare
MMJJ_RS00550 -2.5 -8.0 AIR synthase-related protein compare
MMJJ_RS00385 -2.5 -10.2 TIGR00454 family protein compare
MMJJ_RS07410 -2.5 -3.7 methanogenesis marker protein Mmp4/MtxX compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t2 experiments