Experiment set1IT036 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Manganese (II) chloride tetrahydrate 2.5 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS05350 -4.1 -6.7 manganese efflux pump MntP family protein compare
LRK54_RS10170 -3.8 -27.4 YbaY family lipoprotein compare
LRK54_RS11170 -3.2 -3.8 NADP-dependent malic enzyme compare
LRK54_RS02895 -2.9 -11.1 rhomboid family intramembrane serine protease compare
LRK54_RS01280 -2.9 -2.0 MBL fold metallo-hydrolase compare
LRK54_RS13835 -2.8 -13.8 YhgN family NAAT transporter compare
LRK54_RS00680 -2.7 -12.1 TerC family protein compare
LRK54_RS04585 -2.7 -5.5 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS16940 -2.7 -5.7 RNA polymerase sigma factor RpoE compare
LRK54_RS05655 -2.6 -2.5 ABC transporter permease compare
LRK54_RS03125 -2.6 -2.5 preprotein translocase subunit YajC compare
LRK54_RS17270 -2.6 -3.5 DNA translocase FtsK compare
LRK54_RS05770 -2.5 -17.3 energy transducer TonB compare
LRK54_RS05415 -2.5 -9.0 TetR/AcrR family transcriptional regulator compare
LRK54_RS10150 -2.5 -2.9 DNA topoisomerase I compare
LRK54_RS14825 -2.4 -6.5 protease HtpX compare
LRK54_RS16730 -2.2 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS17505 -2.2 -4.5 preprotein translocase subunit SecG compare
LRK54_RS03290 -2.2 -2.2 RIP metalloprotease RseP compare
LRK54_RS03710 -2.2 -8.9 tetratricopeptide repeat protein compare
LRK54_RS06685 -2.2 -13.4 TolC family outer membrane protein compare
LRK54_RS02090 -2.0 -15.2 NAD-glutamate dehydrogenase compare
LRK54_RS05650 -2.0 -5.2 ABC transporter ATP-binding protein compare
LRK54_RS12670 -2.0 -10.6 glycosyltransferase compare
LRK54_RS04350 -2.0 -6.1 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS16755 -1.9 -3.9 SurA N-terminal domain-containing protein compare
LRK54_RS00670 -1.9 -5.3 OmpA family protein compare
LRK54_RS04720 -1.8 -8.3 phosphoribosylformylglycinamidine synthase compare
LRK54_RS08585 -1.8 -15.7 RimK family alpha-L-glutamate ligase compare
LRK54_RS06470 -1.8 -10.8 carboxy terminal-processing peptidase compare
LRK54_RS13760 -1.7 -8.3 trypsin-like peptidase domain-containing protein compare
LRK54_RS00690 -1.7 -11.0 2-methylcitrate synthase compare
LRK54_RS00815 -1.7 -5.9 pseudouridine synthase compare
LRK54_RS00085 -1.7 -2.0 tetratricopeptide repeat protein compare
LRK54_RS12055 -1.6 -2.7 dipeptide epimerase compare
LRK54_RS11975 -1.6 -6.2 SLC13 family permease compare
LRK54_RS05985 -1.6 -1.6 response regulator transcription factor compare
LRK54_RS10355 -1.6 -3.2 threonine synthase compare
LRK54_RS15035 -1.6 -6.3 M48 family metalloprotease compare
LRK54_RS10950 -1.6 -10.5 S41 family peptidase compare
LRK54_RS08750 -1.5 -4.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS02445 -1.5 -3.7 membrane protein insertion efficiency factor YidD compare
LRK54_RS06885 -1.5 -6.0 rhodanese-like domain-containing protein compare
LRK54_RS14560 -1.5 -10.0 hypothetical protein compare
LRK54_RS00695 -1.5 -4.9 methylisocitrate lyase compare
LRK54_RS00805 -1.5 -3.9 segregation/condensation protein A compare
LRK54_RS12595 -1.4 -3.7 (2Fe-2S)-binding protein compare
LRK54_RS01700 -1.4 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS14695 -1.4 -9.7 rhomboid family intramembrane serine protease compare
LRK54_RS05980 -1.4 -1.6 ATP-binding protein compare
LRK54_RS05200 -1.4 -3.1 hypothetical protein compare
LRK54_RS12590 -1.3 -9.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS12460 -1.3 -2.7 hypothetical protein compare
LRK54_RS12865 -1.3 -6.6 HPr(Ser) kinase/phosphatase compare
LRK54_RS01720 -1.3 -1.4 hydroxyacid dehydrogenase compare
LRK54_RS02855 -1.3 -5.2 type I restriction-modification system subunit M compare
LRK54_RS12625 -1.3 -7.6 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS15105 -1.3 -5.0 polynucleotide adenylyltransferase PcnB compare
LRK54_RS05495 -1.3 -3.8 met regulon transcriptional regulator MetJ compare
LRK54_RS14590 -1.3 -5.8 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02380 -1.3 -5.2 argininosuccinate lyase compare
LRK54_RS12305 -1.3 -7.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS00345 -1.3 -3.6 TraB/GumN family protein compare
LRK54_RS01585 -1.3 -5.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS05635 -1.3 -7.9 dehydrogenase compare
LRK54_RS12855 -1.3 -4.4 PTS fructose transporter subunit IIA compare
LRK54_RS14485 -1.2 -10.0 polyketide cyclase compare
LRK54_RS05630 -1.2 -5.8 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS03895 -1.2 -8.9 lipopolysaccharide biosynthesis protein compare
LRK54_RS05535 -1.2 -5.2 glycosyltransferase family 2 protein compare
LRK54_RS00435 -1.2 -8.9 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS02475 -1.2 -8.1 TRZ/ATZ family hydrolase compare
LRK54_RS05640 -1.2 -6.8 GDP-mannose 4,6-dehydratase compare
LRK54_RS06415 -1.2 -1.5 hypothetical protein compare
LRK54_RS05110 -1.2 -1.0 glycosyltransferase family 4 protein compare
LRK54_RS02260 -1.1 -5.8 hypothetical protein compare
LRK54_RS10865 -1.1 -8.5 DEAD/DEAH box helicase compare
LRK54_RS04025 -1.1 -1.2 diacylglycerol kinase compare
LRK54_RS04920 -1.1 -6.2 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS04240 -1.1 -9.3 TonB-dependent siderophore receptor compare
LRK54_RS10855 -1.1 -3.3 protein-export chaperone SecB compare
LRK54_RS05670 -1.1 -4.5 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS04340 -1.1 -5.2 ribosomal protein S18-alanine N-acetyltransferase compare
LRK54_RS16660 -1.1 -6.5 VTT domain-containing protein compare
LRK54_RS00490 -1.1 -1.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK54_RS04710 -1.1 -3.0 glycosyltransferase family 2 protein compare
LRK54_RS00405 -1.0 -4.3 FHA domain-containing protein compare
LRK54_RS09110 -1.0 -9.2 phospholipase D family protein compare
LRK54_RS02335 -1.0 -5.2 FUSC family protein compare
LRK54_RS03925 -1.0 -7.1 glycosyltransferase family 4 protein compare
LRK54_RS16970 -1.0 -3.4 ribonuclease III compare
LRK54_RS14470 -1.0 -7.7 GNAT family N-acetyltransferase compare
LRK54_RS04230 -1.0 -7.0 HAMP domain-containing histidine kinase compare
LRK54_RS08760 -1.0 -3.3 transaldolase compare
LRK54_RS05645 -1.0 -8.1 glycosyltransferase compare
LRK54_RS10065 -1.0 -2.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS05540 -1.0 -3.3 glycosyltransferase family 2 protein compare
LRK54_RS00080 -1.0 -5.5 helix-turn-helix domain-containing protein compare
LRK54_RS06675 -1.0 -5.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS04235 -1.0 -7.9 response regulator transcription factor compare
LRK54_RS12005 -0.9 -4.6 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS10570 -0.9 -3.2 accessory factor UbiK family protein compare
LRK54_RS05610 -0.9 -5.6 GtrA family protein compare
LRK54_RS02185 -0.9 -2.9 exodeoxyribonuclease V subunit alpha compare
LRK54_RS02265 -0.9 -8.0 ferrous iron transporter B compare
LRK54_RS04190 -0.9 -3.1 response regulator compare
LRK54_RS13800 -0.9 -6.9 DUF1631 domain-containing protein compare
LRK54_RS02470 -0.9 -4.0 YciI family protein compare
LRK54_RS11995 -0.9 -6.2 tRNA-Gly compare
LRK54_RS08520 -0.9 -7.3 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS06610 -0.9 -6.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS11385 -0.9 -3.2 co-chaperone DjlA compare
LRK54_RS08895 -0.9 -2.5 hypothetical protein compare
LRK54_RS14465 -0.8 -3.7 septum site-determining protein MinC compare
LRK54_RS12870 -0.8 -7.3 ribosome-associated translation inhibitor RaiA compare
LRK54_RS16150 -0.8 -1.5 cell wall hydrolase compare
LRK54_RS01395 -0.8 -1.6 arsenate reductase ArsC compare
LRK54_RS16110 -0.8 -5.3 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS18060 -0.8 -3.4 polysaccharide biosynthesis protein compare
LRK54_RS01410 -0.8 -6.2 ABC transporter ATP-binding protein/permease compare
LRK54_RS16770 -0.8 -4.4 methyltransferase domain-containing protein compare
LRK54_RS15200 -0.8 -2.1 AraC family transcriptional regulator compare
LRK54_RS03200 -0.8 -3.7 integration host factor subunit alpha compare
LRK54_RS04450 -0.8 -4.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS16865 -0.7 -4.2 protein phosphatase 2C domain-containing protein compare
LRK54_RS05615 -0.7 -5.8 hypothetical protein compare
LRK54_RS16950 -0.7 -6.2 Do family serine endopeptidase compare
LRK54_RS00630 -0.7 -4.8 RNA chaperone Hfq compare
LRK54_RS10925 -0.7 -1.1 cell division ATP-binding protein FtsE compare
LRK54_RS04370 -0.7 -3.1 threonine/serine exporter family protein compare
LRK54_RS15265 -0.7 -4.7 acetyl-CoA C-acyltransferase compare
LRK54_RS05580 -0.7 -1.5 hypothetical protein compare
LRK54_RS12860 -0.7 -2.3 RNase adapter RapZ compare
LRK54_RS13805 -0.7 -2.7 hypothetical protein compare
LRK54_RS01800 -0.7 -1.5 dCTP deaminase compare
LRK54_RS02110 -0.7 -4.0 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS02175 -0.7 -4.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS09725 -0.7 -0.9 phosphopantetheine-binding protein compare
LRK54_RS03915 -0.7 -4.8 glycosyltransferase family 2 protein compare
LRK54_RS12065 -0.7 -4.1 MurR/RpiR family transcriptional regulator compare
LRK54_RS09155 -0.7 -2.4 SPOR domain-containing protein compare
LRK54_RS04820 -0.7 -1.1 GspH/FimT family pseudopilin compare
LRK54_RS09945 -0.7 -2.7 class I SAM-dependent methyltransferase compare
LRK54_RS03920 -0.7 -1.4 hypothetical protein compare
LRK54_RS04090 -0.7 -5.2 response regulator transcription factor compare
LRK54_RS06720 -0.6 -4.7 glycosyltransferase compare
LRK54_RS03055 -0.6 -3.8 non-heme iron oxygenase ferredoxin subunit compare
LRK54_RS04545 -0.6 -3.4 hemin uptake protein HemP compare
LRK54_RS00495 -0.6 -4.7 ribonuclease R compare
LRK54_RS01235 -0.6 -5.6 Slp family lipoprotein compare
LRK54_RS16735 -0.6 -5.1 endopeptidase La compare
LRK54_RS05455 -0.6 -5.2 monofunctional biosynthetic peptidoglycan transglycosylase compare
LRK54_RS09250 -0.6 -5.7 rhomboid family intramembrane serine protease compare
LRK54_RS05490 -0.6 -4.0 energy transducer TonB compare
LRK54_RS07460 -0.6 -1.4 hypothetical protein compare
LRK54_RS18015 -0.6 -4.6 LysR family transcriptional regulator compare
LRK54_RS15090 -0.6 -3.1 hypothetical protein compare
LRK54_RS16665 -0.6 -4.2 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS18055 -0.6 -2.6 glycosyltransferase family 4 protein compare
LRK54_RS16360 -0.6 -1.1 NAD(+)--rifampin ADP-ribosyltransferase compare
LRK54_RS05045 -0.6 -4.6 ATP-binding protein compare
LRK54_RS01415 -0.6 -4.3 DUF3772 domain-containing protein compare
LRK54_RS15165 -0.6 -2.0 enoyl-CoA hydratase-related protein compare
LRK54_RS00615 -0.6 -3.0 protease modulator HflC compare
LRK54_RS01295 -0.6 -0.8 DUF6165 family protein compare
LRK54_RS02180 -0.6 -3.2 UvrD-helicase domain-containing protein compare
LRK54_RS02435 -0.6 -5.0 TonB-dependent siderophore receptor compare
LRK54_RS06475 -0.6 -3.2 lipoyl synthase compare
LRK54_RS15080 -0.6 -2.7 glycine cleavage system protein R compare
LRK54_RS16015 -0.6 -4.5 formylglycine-generating enzyme family protein compare
LRK54_RS15240 -0.6 -3.7 FTR1 family protein compare
LRK54_RS10920 -0.5 -4.8 DEAD/DEAH box helicase compare
LRK54_RS06960 -0.5 -1.8 hypothetical protein compare
LRK54_RS02700 -0.5 -2.0 ribosome silencing factor compare
LRK54_RS03375 -0.5 -4.1 metalloprotease PmbA compare
LRK54_RS03395 -0.5 -4.9 metalloprotease TldD compare
LRK54_RS03910 -0.5 -3.8 glycosyltransferase compare
LRK54_RS07715 -0.5 -3.3 LacI family DNA-binding transcriptional regulator compare
LRK54_RS02415 -0.5 -3.5 N-acetylornithine carbamoyltransferase compare
LRK54_RS11805 -0.5 -3.6 ATP-dependent DNA helicase RecG compare
LRK54_RS01780 -0.5 -3.6 30S ribosomal protein S12 methylthiotransferase RimO compare
LRK54_RS03035 -0.5 -3.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS01595 -0.5 -2.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK54_RS14100 -0.5 -4.1 cytochrome b conserved
LRK54_RS09615 -0.5 -2.1 MerR family transcriptional regulator compare
LRK54_RS17935 -0.5 -3.1 RnfH family protein compare
LRK54_RS07285 -0.5 -4.6 sulfatase-like hydrolase/transferase compare
LRK54_RS11450 -0.5 -3.6 transcriptional repressor AgaR compare
LRK54_RS09735 -0.5 -1.3 hydroxymyristoyl-ACP dehydratase compare
LRK54_RS11055 -0.5 -3.8 lipid-binding SYLF domain-containing protein compare
LRK54_RS05275 -0.5 -1.2 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS14670 -0.5 -0.8 NrsF family protein compare
LRK54_RS04995 -0.5 -1.5 LacI family DNA-binding transcriptional regulator compare
LRK54_RS09845 -0.5 -4.3 efflux RND transporter permease subunit compare
LRK54_RS10565 -0.5 -2.5 P-II family nitrogen regulator compare
LRK54_RS15285 -0.5 -4.3 Glu/Leu/Phe/Val dehydrogenase compare
LRK54_RS09805 -0.5 -2.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS05775 -0.5 -3.0 pyruvate kinase compare
LRK54_RS06810 -0.5 -2.8 50S ribosomal protein L11 methyltransferase compare
LRK54_RS10120 -0.5 -4.3 glycosyltransferase family 39 protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Manganese (II) chloride tetrahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Manganese (II) chloride tetrahydrate across organisms