Experiment set1IT036 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_12020 -5.2 -9.3 pyruvate carboxylase subunit A compare
AO356_16075 -4.6 -3.1 Fis family transcriptional regulator compare
AO356_08635 -4.1 -10.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_12025 -4.1 -15.6 pyruvate carboxylase subunit B compare
AO356_12780 -3.7 -7.1 argininosuccinate lyase compare
AO356_21400 -3.6 -8.2 isopropylmalate isomerase compare
AO356_21405 -3.6 -5.9 3-isopropylmalate dehydratase compare
AO356_12520 -3.6 -2.5 orotate phosphoribosyltransferase compare
AO356_12525 -3.6 -10.8 acetylglutamate kinase compare
AO356_09810 -3.6 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_19795 -3.6 -3.4 glycerol-3-phosphate dehydrogenase compare
AO356_16175 -3.6 -9.6 acetolactate synthase 3 regulatory subunit compare
AO356_21440 -3.6 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_10300 -3.6 -6.6 3-phosphoglycerate dehydrogenase compare
AO356_13405 -3.6 -11.2 methionine biosynthesis protein MetW compare
AO356_06965 -3.4 -9.9 histidinol dehydrogenase compare
AO356_09815 -3.3 -7.4 imidazoleglycerol-phosphate dehydratase compare
AO356_14435 -3.3 -8.2 anthranilate phosphoribosyltransferase compare
AO356_09800 -3.3 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_13605 -3.2 -11.2 5,10-methylenetetrahydrofolate reductase compare
AO356_21415 -3.2 -10.7 3-isopropylmalate dehydrogenase compare
AO356_18275 -3.1 -13.8 ornithine carbamoyltransferase compare
AO356_13085 -3.1 -11.3 N-acetylglutamate synthase compare
AO356_19090 -3.1 -2.9 phosphoribosylaminoimidazole synthetase compare
AO356_13410 -3.1 -13.1 homoserine O-acetyltransferase compare
AO356_09375 -3.0 -18.7 glutamate synthase compare
AO356_09520 -3.0 -6.3 phosphoribosyl-AMP cyclohydrolase compare
AO356_09370 -3.0 -11.9 glutamate synthase compare
AO356_16170 -3.0 -12.1 acetolactate synthase 3 catalytic subunit compare
AO356_22795 -3.0 -2.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_14420 -2.9 -15.2 anthranilate synthase compare
AO356_08905 -2.9 -2.8 glycosyl transferase compare
AO356_09525 -2.8 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_12015 -2.8 -10.2 LysR family transcriptional regulator compare
AO356_16180 -2.8 -13.2 ketol-acid reductoisomerase compare
AO356_18325 -2.7 -11.0 argininosuccinate synthase compare
AO356_08735 -2.7 -11.6 phosphoserine phosphatase compare
AO356_06970 -2.7 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_00560 -2.7 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_10915 -2.7 -9.4 tryptophan synthase subunit beta compare
AO356_01750 -2.7 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO356_14440 -2.6 -5.1 indole-3-glycerol-phosphate synthase compare
AO356_21465 -2.5 -5.2 amidophosphoribosyltransferase compare
AO356_17520 -2.5 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_13250 -2.5 -8.5 dihydroxy-acid dehydratase compare
AO356_14430 -2.4 -7.7 anthranilate synthase compare
AO356_00355 -2.4 -9.4 chemotaxis protein CheY compare
AO356_06550 -2.4 -8.5 2-isopropylmalate synthase compare
AO356_21470 -2.3 -9.0 O-succinylhomoserine sulfhydrylase compare
AO356_19045 -2.3 -10.8 chemotaxis protein CheY compare
AO356_11610 -2.3 -2.1 glycerol acyltransferase compare
AO356_10910 -2.2 -8.2 tryptophan synthase subunit alpha compare
AO356_11315 -2.2 -1.5 shikimate dehydrogenase compare
AO356_19050 -2.2 -3.2 cysteine synthase compare
AO356_00555 -2.1 -10.2 sulfite reductase compare
AO356_18805 -2.0 -1.8 magnesium transporter compare
AO356_10340 -1.9 -10.1 phosphoserine phosphatase compare
AO356_03405 -1.9 -4.4 serine acetyltransferase compare
AO356_11025 -1.9 -5.3 transcriptional regulator PhoU compare
AO356_06575 -1.7 -3.3 outer membrane protein assembly factor BamB compare
AO356_15165 -1.7 -2.5 protein cII compare
AO356_22200 -1.7 -7.4 sirohydrochlorin ferrochelatase compare
AO356_01745 -1.7 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_16095 -1.7 -7.8 molecular chaperone DnaK compare
AO356_28695 -1.7 -2.9 IclR family transcriptional regulator compare
AO356_04560 -1.7 -2.8 serine peptidase compare
AO356_14295 -1.7 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_02265 -1.7 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_20830 -1.6 -3.2 phosphoadenosine phosphosulfate reductase compare
AO356_07480 -1.6 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_12640 -1.6 -2.7 cytochrome C compare
AO356_15815 -1.6 -2.5 gamma-glutamyl kinase compare
AO356_27215 -1.6 -3.7 hypothetical protein compare
AO356_18730 -1.5 -7.1 arginine N-succinyltransferase compare
AO356_19085 -1.5 -6.5 phosphoribosylglycinamide formyltransferase compare
AO356_19520 -1.5 -3.9 isochorismatase compare
AO356_08895 -1.4 -1.6 GlcNAc-PI de-N-acetylase compare
AO356_07005 -1.4 -2.3 ABC transporter ATP-binding protein compare
AO356_11465 -1.4 -7.3 DNA polymerase I compare
AO356_00880 -1.4 -2.7 integration host factor subunit alpha compare
AO356_18855 -1.4 -2.0 hypothetical protein compare
AO356_06385 -1.4 -3.2 recombinase XerD compare
AO356_06960 -1.4 -5.7 histidinol-phosphate aminotransferase compare
AO356_07390 -1.3 -1.4 polyribonucleotide nucleotidyltransferase compare
AO356_12375 -1.3 -8.0 histidine kinase compare
AO356_05640 -1.3 -3.9 LuxR family transcriptional regulator compare
AO356_07910 -1.3 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_25670 -1.3 -6.2 regulator conserved
AO356_07915 -1.3 -2.4 exodeoxyribonuclease V subunit beta compare
AO356_07385 -1.2 -1.6 tRNA-Thr compare
AO356_10350 -1.2 -8.0 phosphoenolpyruvate-protein phosphotransferase compare
AO356_20880 -1.2 -2.2 3-methylitaconate isomerase compare
AO356_06325 -1.2 -1.3 plasmid stabilization protein ParE compare
AO356_27210 -1.2 -6.3 hypothetical protein compare
AO356_19420 -1.2 -1.8 septum formation inhibitor compare
AO356_17890 -1.2 -2.2 H-NS histone compare
AO356_10170 -1.2 -1.7 chemotaxis protein CheY compare
AO356_03400 -1.1 -4.5 aminotransferase DegT compare
AO356_17985 -1.1 -4.7 cold-shock protein compare
AO356_12735 -1.1 -1.5 diaminopimelate epimerase compare
AO356_27360 -1.1 -3.3 nitrile hydratase subunit alpha compare
AO356_04275 -1.1 -1.6 3-oxoacyl-ACP synthase compare
AO356_17070 -1.1 -1.4 cytochrome B compare
AO356_19425 -1.1 -1.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03435 -1.1 -2.8 integration host factor subunit beta compare
AO356_15325 -1.1 -1.7 hypothetical protein compare
AO356_27180 -1.1 -2.7 hypothetical protein compare
AO356_27250 -1.1 -4.9 hypothetical protein compare
AO356_14540 -1.1 -1.3 biotin--protein ligase compare
AO356_07055 -1.1 -2.2 phosphocarrier protein HPr compare
AO356_12725 -1.1 -3.2 recombinase XerC compare
AO356_16870 -1.0 -6.4 benzoate transporter compare
AO356_10330 -1.0 -8.0 threonine dehydratase compare
AO356_10585 -1.0 -7.2 hypothetical protein compare
AO356_03810 -1.0 -3.7 anti-anti-sigma factor compare
AO356_20630 -1.0 -2.2 Presumed portal vertex protein compare
AO356_16080 -1.0 -6.3 ATPase compare
AO356_18025 -1.0 -1.9 ATP-dependent DNA helicase RuvB compare
AO356_26285 -1.0 -2.7 sugar ABC transporter substrate-binding protein compare
AO356_15140 -1.0 -1.9 homoserine dehydrogenase compare
AO356_27840 -1.0 -5.6 sodium:proton antiporter compare
AO356_03180 -1.0 -3.4 CysB family transcriptional regulator compare
AO356_27205 -1.0 -4.9 hypothetical protein compare
AO356_18020 -1.0 -2.6 ATP-dependent DNA helicase RuvA compare
AO356_03415 -1.0 -5.4 oxidoreductase compare
AO356_05250 -0.9 -0.9 hypothetical protein compare
AO356_02190 -0.9 -4.4 hypothetical protein compare
AO356_18735 -0.9 -3.4 arginine N-succinyltransferase compare
AO356_03345 -0.9 -5.1 hypothetical protein compare
AO356_05670 -0.9 -1.9 recombinase RecA compare
AO356_09185 -0.9 -1.5 hypothetical protein compare
AO356_07920 -0.9 -3.3 exodeoxyribonuclease V subunit gamma compare
AO356_30345 -0.9 -3.2 IclR family transcriptional regulator compare
AO356_01410 -0.9 -1.9 hypothetical protein compare
AO356_03500 -0.8 -2.5 3-oxoacyl-ACP reductase compare
AO356_05630 -0.8 -2.7 LysR family transcriptional regulator compare
AO356_06615 -0.8 -1.1 FeS assembly protein IscX compare
AO356_17035 -0.8 -3.4 ATPase compare
AO356_09795 -0.8 -0.6 imidazole glycerol phosphate synthase subunit HisF compare
AO356_26755 -0.8 -1.7 DNA-directed RNA polymerase subunit alpha compare
AO356_27170 -0.8 -2.5 XRE family transcriptional regulator compare
AO356_05995 -0.8 -1.9 hypothetical protein compare
AO356_12380 -0.8 -4.0 ATP-dependent DNA helicase RecG compare
AO356_17950 -0.8 -4.5 histidine kinase compare
AO356_10140 -0.8 -4.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_27235 -0.8 -3.6 hypothetical protein compare
AO356_02175 -0.8 -4.4 transaldolase compare
AO356_25675 -0.8 -4.4 histidine kinase compare
AO356_18590 -0.8 -2.2 hypothetical protein compare
AO356_08585 -0.8 -2.2 50S ribosomal protein L9 compare
AO356_14145 -0.8 -3.4 transporter compare
AO356_27230 -0.8 -3.8 hypothetical protein compare
AO356_28580 -0.7 -1.7 sugar ABC transporter permease compare
AO356_18725 -0.7 -2.9 acetylornithine aminotransferase compare
AO356_08880 -0.7 -3.3 glycosyl transferase compare
AO356_09730 -0.7 -2.6 nitrogen regulation protein NR(I) compare
AO356_17065 -0.7 -0.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_02315 -0.7 -2.1 DNA topoisomerase I compare
AO356_25225 -0.7 -1.2 peptidylprolyl isomerase compare
AO356_30430 -0.7 -2.3 hypothetical protein compare
AO356_06980 -0.7 -2.4 BolA family transcriptional regulator compare
AO356_08235 -0.7 -4.2 histidine kinase compare
AO356_16050 -0.7 -1.8 glucose-6-phosphate isomerase compare
AO356_03095 -0.7 -3.5 protease HtpX compare
AO356_08875 -0.7 -1.7 toluene tolerance protein compare
AO356_13475 -0.7 -3.3 glutathione synthetase compare
AO356_10485 -0.7 -1.2 hypothetical protein compare
AO356_30375 -0.7 -1.9 hypothetical protein compare
AO356_16665 -0.7 -4.8 sulfate adenylyltransferase compare
AO356_16670 -0.7 -5.0 adenylylsulfate kinase compare
AO356_01840 -0.7 -1.5 uracil permease compare
AO356_06990 -0.7 -2.6 toluene tolerance protein compare
AO356_07000 -0.7 -1.6 ABC transporter permease compare
AO356_14135 -0.7 -5.0 biotin synthase compare
AO356_27240 -0.7 -2.4 hypothetical protein compare
AO356_01555 -0.7 -3.8 acyl-CoA dehydrogenase compare
AO356_10695 -0.7 -3.9 diguanylate cyclase compare
AO356_29355 -0.7 -1.2 hypothetical protein compare
AO356_01940 -0.7 -1.2 hypothetical protein compare
AO356_16600 -0.7 -1.3 malate:quinone oxidoreductase compare
AO356_25750 -0.7 -1.4 GntR family transcriptional regulator compare
AO356_14050 -0.7 -0.9 glutathione S-transferase compare
AO356_22450 -0.7 -3.2 hypothetical protein compare
AO356_12900 -0.6 -1.9 exopolyphosphatase compare
AO356_02825 -0.6 -4.9 phosphoenolpyruvate synthase compare
AO356_18850 -0.6 -2.0 hypothetical protein compare
AO356_24325 -0.6 -2.3 type VI secretion protein compare
AO356_10005 -0.6 -3.8 branched-chain amino acid permease (azaleucine resistance) compare
AO356_28520 -0.6 -1.8 multidrug MFS transporter compare
AO356_10000 -0.6 -1.7 hypothetical protein compare
AO356_11680 -0.6 -0.9 chromosome partitioning protein ParB compare
AO356_13455 -0.6 -2.3 uracil phosphoribosyltransferase compare
AO356_19225 -0.6 -4.4 histidine kinase compare
AO356_21330 -0.6 -4.0 aromatic amino acid aminotransferase compare
AO356_08870 -0.6 -3.5 polymerase compare
AO356_12650 -0.6 -2.4 xanthine phosphoribosyltransferase compare
AO356_04970 -0.6 -2.3 aspartate-semialdehyde dehydrogenase compare
AO356_27995 -0.6 -0.9 thioredoxin reductase compare
AO356_10245 -0.6 -2.5 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA compare
AO356_21275 -0.6 -1.2 peptidase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium pyruvate across organisms