Experiment set1IT036 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07660 -6.1 -8.4 carbonic anhydrase compare
MMJJ_RS08855 -5.9 -5.4 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07670 -5.7 -19.8 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS08005 -5.7 -17.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS07665 -5.6 -28.6 formate dehydrogenase subunit alpha compare
MMJJ_RS06600 -5.2 -3.4 DUF555 domain-containing protein compare
MMJJ_RS02055 -5.2 -13.0 GTP 3',8-cyclase MoaA compare
MMJJ_RS03065 -5.2 -16.0 CBS domain-containing protein compare
MMJJ_RS05155 -5.1 -6.0 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS07995 -5.0 -9.0 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00645 -5.0 -6.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS07655 -5.0 -14.8 hypothetical protein compare
MMJJ_RS06860 -5.0 -3.4 hypothetical protein compare
MMJJ_RS00050 -5.0 -11.9 AAA family ATPase compare
MMJJ_RS07650 -4.9 -23.0 formate/nitrite transporter family protein compare
MMJJ_RS04475 -4.8 -5.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS04485 -4.7 -10.8 riboflavin synthase compare
MMJJ_RS00580 -4.7 -2.3 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS01810 -4.6 -2.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06725 -4.6 -8.9 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06155 -4.6 -3.1 phosphatidylglycerophosphatase A compare
MMJJ_RS00055 -4.6 -12.7 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS00040 -4.6 -12.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS07635 -4.5 -16.3 response regulator transcription factor compare
MMJJ_RS05535 -4.5 -13.5 hypothetical protein compare
MMJJ_RS04595 -4.5 -7.4 hypothetical protein compare
MMJJ_RS06270 -4.5 -6.8 dethiobiotin synthase compare
MMJJ_RS02935 -4.5 -3.8 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS03115 -4.5 -7.8 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS06510 -4.4 -3.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS03620 -4.4 -3.0 DUF2097 domain-containing protein compare
MMJJ_RS04200 -4.4 -5.2 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS00275 -4.4 -2.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00450 -4.4 -2.5 DUF126 domain-containing protein compare
MMJJ_RS00060 -4.3 -19.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS08080 -4.3 -8.7 TIGR00300 family protein compare
MMJJ_RS00045 -4.3 -18.2 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS02920 -4.3 -2.5 30S ribosomal protein S27ae compare
MMJJ_RS07975 -4.3 -13.4 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS08020 -4.2 -9.6 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07640 -4.2 -24.0 cache domain-containing protein compare
MMJJ_RS03920 -4.2 -16.2 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS05575 -4.2 -4.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06915 -4.2 -18.1 helix-turn-helix domain-containing protein compare
MMJJ_RS06260 -4.2 -10.3 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS00035 -4.2 -19.6 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00065 -4.2 -11.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06240 -4.1 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS08065 -4.1 -3.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS01935 -4.1 -2.8 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS02045 -4.1 -2.8 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06930 -4.1 -2.8 type II methionyl aminopeptidase compare
MMJJ_RS07350 -4.1 -2.8 4Fe-4S binding protein compare
MMJJ_RS06855 -4.0 -2.0 DUF2104 domain-containing protein compare
MMJJ_RS08035 -4.0 -8.8 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04685 -4.0 -6.6 carbamoyltransferase HypF compare
MMJJ_RS07160 -4.0 -20.6 M20 family metallo-hydrolase compare
MMJJ_RS07720 -4.0 -2.2 UPF0058 family protein compare
MMJJ_RS08625 -4.0 -2.7 magnesium/cobalt transporter CorA compare
MMJJ_RS06220 -4.0 -2.7 polyamine aminopropyltransferase compare
MMJJ_RS01750 -3.9 -2.7 ferrous iron transport protein A compare
MMJJ_RS04155 -3.9 -2.7 hypothetical protein compare
MMJJ_RS06265 -3.9 -15.2 8-amino-7-oxononanoate synthase compare
MMJJ_RS05190 -3.8 -11.7 gamma carbonic anhydrase family protein compare
MMJJ_RS06490 -3.8 -2.6 methanogenesis marker 2 protein compare
MMJJ_RS08095 -3.8 -2.6 cobyric acid synthase CobQ compare
MMJJ_RS08000 -3.8 -10.0 HesA/MoeB/ThiF family protein compare
MMJJ_RS00075 -3.8 -14.5 AAA family ATPase compare
MMJJ_RS04800 -3.8 -4.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05445 -3.8 -2.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS00935 -3.8 -16.4 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS07980 -3.8 -12.4 biotin synthase BioB compare
MMJJ_RS00205 -3.7 -4.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS05065 -3.7 -5.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS03865 -3.7 -1.8 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS06050 -3.7 -11.5 molybdopterin molybdotransferase MoeA compare
MMJJ_RS08155 -3.7 -3.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS03670 -3.7 -2.5 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS00125 -3.7 -2.5 KEOPS complex subunit Cgi121 compare
MMJJ_RS02200 -3.6 -7.7 chorismate pyruvate-lyase family protein compare
MMJJ_RS03200 -3.6 -2.3 uroporphyrinogen-III synthase compare
MMJJ_RS06875 -3.6 -2.4 hypothetical protein compare
MMJJ_RS08535 -3.6 -3.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS09375 -3.6 -1.8 hypothetical protein compare
MMJJ_RS07725 -3.6 -5.4 DNA primase DnaG compare
MMJJ_RS03270 -3.6 -2.1 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00355 -3.6 -2.4 ribonuclease P protein component 4 compare
MMJJ_RS05995 -3.6 -2.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS03110 -3.5 -2.4 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03490 -3.5 -3.3 ribonuclease VapC compare
MMJJ_RS04145 -3.5 -10.4 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS01350 -3.5 -6.2 sodium:proton antiporter compare
MMJJ_RS06700 -3.5 -6.1 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04700 -3.5 -6.2 deoxyhypusine synthase compare
MMJJ_RS03500 -3.5 -10.1 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS03580 -3.5 -3.3 TIGR00303 family protein compare
MMJJ_RS08870 -3.5 -1.4 2-isopropylmalate synthase compare
MMJJ_RS07430 -3.5 -3.7 ribonuclease VapC compare
MMJJ_RS00080 -3.5 -17.1 DUF166 domain-containing protein compare
MMJJ_RS06485 -3.4 -2.3 phosphoglycerate kinase compare
MMJJ_RS07950 -3.4 -2.3 4Fe-4S binding protein compare
MMJJ_RS09135 -3.4 -11.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06015 -3.4 -12.3 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS03965 -3.4 -1.9 DNA-directed RNA polymerase subunit L compare
MMJJ_RS07355 -3.4 -6.6 MoaD/ThiS family protein compare
MMJJ_RS05935 -3.3 -2.1 Era-like GTP-binding protein compare
MMJJ_RS06375 -3.3 -4.9 UbiX family flavin prenyltransferase compare
MMJJ_RS06180 -3.3 -2.3 tryptophan--tRNA ligase compare
MMJJ_RS05540 -3.3 -20.5 LysR family transcriptional regulator compare
MMJJ_RS04520 -3.3 -4.9 coenzyme F430 synthase compare
MMJJ_RS03150 -3.3 -6.4 2-phospho-L-lactate transferase compare
MMJJ_RS06000 -3.3 -6.4 cation:proton antiporter subunit C compare
MMJJ_RS06715 -3.3 -9.7 lactaldehyde dehydrogenase compare
MMJJ_RS05070 -3.3 -2.1 DNA primase catalytic subunit PriS compare
MMJJ_RS04970 -3.2 -1.9 DUF655 domain-containing protein compare
MMJJ_RS07245 -3.2 -6.0 amidohydrolase family protein compare
MMJJ_RS06010 -3.2 -7.2 hypothetical protein compare
MMJJ_RS03295 -3.2 -14.0 PHP domain-containing protein compare
MMJJ_RS04650 -3.2 -5.9 nitrogenase iron protein compare
MMJJ_RS08250 -3.2 -5.6 hydrogenase maturation peptidase HycI compare
MMJJ_RS06695 -3.2 -2.2 amidohydrolase compare
MMJJ_RS00070 -3.2 -2.4 CooT family nickel-binding protein compare
MMJJ_RS05370 -3.2 -10.1 LysR family transcriptional regulator compare
MMJJ_RS01600 -3.1 -2.1 radical SAM protein compare
MMJJ_RS03310 -3.1 -3.0 hypothetical protein compare
MMJJ_RS00370 -3.1 -2.3 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03060 -3.1 -4.0 methanogenesis marker 7 protein compare
MMJJ_RS07785 -3.1 -2.1 fumarate reductase subunit A compare
MMJJ_RS03170 -3.1 -8.5 DUF5612 domain-containing protein compare
MMJJ_RS08850 -3.1 -2.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06040 -3.1 -2.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06020 -3.1 -6.9 hypothetical protein compare
MMJJ_RS04050 -3.1 -2.1 dihydroneopterin aldolase family protein compare
MMJJ_RS05490 -3.1 -2.1 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08840 -3.1 -4.1 calcium/sodium antiporter compare
MMJJ_RS03760 -3.1 -2.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06625 -3.1 -1.7 pyruvate synthase subunit PorB compare
MMJJ_RS06255 -3.0 -5.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS02190 -3.0 -15.3 molybdopterin biosynthesis protein compare
MMJJ_RS04995 -3.0 -5.3 Tfx family DNA-binding protein compare
MMJJ_RS04975 -3.0 -1.9 glycosyltransferase family 4 protein compare
MMJJ_RS03125 -3.0 -4.8 GMC oxidoreductase compare
MMJJ_RS03190 -3.0 -2.0 phosphopyruvate hydratase compare
MMJJ_RS07155 -3.0 -10.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS06905 -3.0 -2.7 hypothetical protein compare
MMJJ_RS05260 -3.0 -6.3 ATP-grasp domain-containing protein compare
MMJJ_RS06390 -3.0 -1.7 NADPH-dependent F420 reductase compare
MMJJ_RS03895 -3.0 -4.3 hydrogenase expression/formation protein HypE compare
MMJJ_RS07190 -3.0 -2.0 RtcB family protein compare
MMJJ_RS08010 -2.9 -8.0 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06030 -2.9 -6.5 4Fe-4S binding protein compare
MMJJ_RS01360 -2.9 -2.0 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06295 -2.9 -9.9 DUF2096 family protein compare
MMJJ_RS05930 -2.9 -1.8 cell division protein SepF compare
MMJJ_RS04790 -2.9 -4.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS03055 -2.9 -3.2 hypothetical protein compare
MMJJ_RS08320 -2.9 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03875 -2.9 -4.2 CBS domain-containing protein compare
MMJJ_RS03005 -2.8 -3.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS06760 -2.8 -3.8 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08330 -2.8 -3.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS05810 -2.8 -4.9 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS03095 -2.8 -1.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS05720 -2.8 -2.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS04150 -2.8 -2.9 DUF5379 domain-containing protein compare
MMJJ_RS06840 -2.8 -2.6 nickel-dependent hydrogenase large subunit compare
MMJJ_RS02090 -2.7 -4.7 tyramine--L-glutamate ligase compare
MMJJ_RS08405 -2.7 -13.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS00215 -2.7 -1.8 CCA tRNA nucleotidyltransferase compare
MMJJ_RS06025 -2.7 -16.6 4Fe-4S binding protein compare
MMJJ_RS00270 -2.7 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05330 -2.7 -1.8 DNA polymerase II large subunit compare
MMJJ_RS03660 -2.7 -3.8 DUF447 family protein compare
MMJJ_RS06005 -2.7 -8.3 energy conserving hydrogenase EhbF compare
MMJJ_RS08055 -2.6 -8.0 methanogenesis marker 14 protein compare
MMJJ_RS06225 -2.6 -1.7 adenosylmethionine decarboxylase compare
MMJJ_RS02275 -2.6 -3.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00360 -2.6 -2.4 adenosylhomocysteinase compare
MMJJ_RS08430 -2.6 -7.0 small nuclear ribonucleoprotein compare
MMJJ_RS06250 -2.6 -1.7 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS08340 -2.6 -5.4 archaeoflavoprotein AfpA compare
MMJJ_RS05950 -2.6 -3.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS04505 -2.6 -7.8 CDC48 family AAA ATPase compare
MMJJ_RS02040 -2.6 -2.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04730 -2.6 -1.7 tyrosine decarboxylase MfnA compare
MMJJ_RS06200 -2.6 -2.7 phosphoglycerate dehydrogenase compare
MMJJ_RS00560 -2.6 -3.7 homoisocitrate dehydrogenase compare
MMJJ_RS07705 -2.6 -1.7 GTP-binding protein EngB compare
MMJJ_RS07265 -2.5 -11.8 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS08500 -2.5 -8.1 L-sulfolactate dehydrogenase compare
MMJJ_RS00550 -2.5 -7.7 AIR synthase-related protein compare
MMJJ_RS05620 -2.5 -2.4 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS09175 -2.5 -1.0 anthranilate synthase component I compare
MMJJ_RS06835 -2.5 -11.0 4Fe-4S binding protein compare
MMJJ_RS03615 -2.5 -2.8 cobalt-precorrin-8 methylmutase compare
MMJJ_RS01860 -2.5 -14.0 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS07470 -2.5 -2.7 50S ribosome-binding GTPase compare
MMJJ_RS06110 -2.5 -2.3 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06215 -2.5 -5.0 agmatinase compare
MMJJ_RS03540 -2.5 -9.6 TIGR00289 family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t2 experiments