Experiment set1IT036 for Burkholderia phytofirmans PsJN

Compare to:

LB with Thallium(I) acetate 0.01 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS00965 +7.3 41.7 ArsR family transcriptional regulator compare
BPHYT_RS01795 +1.4 9.3 histidine kinase compare
BPHYT_RS01790 +1.3 9.0 LuxR family transcriptional regulator compare
BPHYT_RS03090 +1.3 2.1 hypothetical protein compare
BPHYT_RS18825 +1.3 4.0 flagellar biosynthesis protein FliP compare
BPHYT_RS36150 +1.2 1.6 hypothetical protein compare
BPHYT_RS19025 +1.2 7.0 transcriptional regulator compare
BPHYT_RS13320 +1.1 1.8 allantoate amidohydrolase compare
BPHYT_RS05395 +1.1 2.0 hypothetical protein compare
BPHYT_RS30610 +1.1 2.6 major facilitator transporter compare
BPHYT_RS27655 +1.0 2.3 potassium transporter compare
BPHYT_RS18945 +1.0 5.5 flagellar biosynthesis protein FlhB compare
BPHYT_RS02560 +1.0 6.1 glutathione synthetase compare
BPHYT_RS11705 +1.0 1.9 hypothetical protein compare
BPHYT_RS25500 +0.9 1.8 hypothetical protein compare
BPHYT_RS33515 +0.9 7.5 porin compare
BPHYT_RS36220 +0.9 1.5 hypothetical protein compare
BPHYT_RS00815 +0.9 1.6 hypothetical protein compare
BPHYT_RS35800 +0.9 3.0 TetR family transcriptional regulator compare
BPHYT_RS09480 +0.9 1.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS11215 +0.9 6.2 ribose ABC transporter ATPase compare
BPHYT_RS30210 +0.9 4.0 GCN5 family acetyltransferase compare
BPHYT_RS07705 +0.9 2.3 arginine succinyltransferase compare
BPHYT_RS20905 +0.9 2.5 hypothetical protein compare
BPHYT_RS18785 +0.9 2.1 flagellar assembly protein FliH compare
BPHYT_RS06080 +0.9 1.9 endonuclease IV compare
BPHYT_RS35100 +0.9 2.3 ABC transporter substrate-binding protein compare
BPHYT_RS10540 +0.8 1.8 secretion protein compare
BPHYT_RS08905 +0.8 2.2 peroxiredoxin compare
BPHYT_RS35750 +0.8 1.0 hypothetical protein compare
BPHYT_RS23270 +0.8 1.9 enoyl-CoA hydratase compare
BPHYT_RS18935 +0.8 4.6 flagellar biosynthesis regulator FlhF compare
BPHYT_RS03470 +0.8 4.4 LysR family transcriptional regulator compare
BPHYT_RS07325 +0.8 1.3 GntR family transcriptional regulator compare
BPHYT_RS02365 +0.8 1.4 hypothetical protein compare
BPHYT_RS17100 +0.8 4.4 RNA pyrophosphohydrolase compare
BPHYT_RS00885 +0.8 2.4 chemotaxis protein CheY compare
BPHYT_RS04455 +0.8 0.8 glycosyl transferase compare
BPHYT_RS25815 +0.8 1.4 deoxyribose-phosphate aldolase compare
BPHYT_RS17095 +0.8 3.4 proline--tRNA ligase compare
BPHYT_RS05610 +0.8 6.3 DNA-cytosine methyltransferase compare
BPHYT_RS19945 +0.8 2.2 hypothetical protein compare
BPHYT_RS30230 +0.8 1.7 LysR family transcriptional regulator compare
BPHYT_RS15075 +0.8 2.4 dihydrokaempferol 4-reductase compare
BPHYT_RS22640 +0.8 1.4 hydroxyproline-2-epimerase compare
BPHYT_RS18940 +0.8 5.3 flagellar biosynthesis protein FlhA compare
BPHYT_RS18880 +0.8 5.8 flagellar hook protein FlgE compare
BPHYT_RS11970 +0.8 1.4 cupin compare
BPHYT_RS02300 +0.8 1.5 acid shock protein compare
BPHYT_RS18890 +0.8 5.8 flagellar basal body rod protein FlgC compare
BPHYT_RS22030 +0.8 2.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS11265 +0.7 1.9 hypothetical protein compare
BPHYT_RS18775 +0.7 5.4 flagellar M-ring protein FliF compare
BPHYT_RS00980 +0.7 1.0 GCN5 family acetyltransferase compare
BPHYT_RS05420 +0.7 2.4 glutathione S-transferase compare
BPHYT_RS21505 +0.7 1.9 amidohydrolase compare
BPHYT_RS18835 +0.7 1.4 flagellar biosynthesis protein FliR compare
BPHYT_RS20515 +0.7 2.3 alpha/beta hydrolase compare
BPHYT_RS28025 +0.7 1.5 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS18810 +0.7 5.2 flagellar motor switch protein FliM compare
BPHYT_RS02555 +0.7 4.8 glutamate--cysteine ligase compare
BPHYT_RS36340 +0.7 1.7 hypothetical protein compare
BPHYT_RS05520 +0.7 3.1 transcriptional regulator compare
BPHYT_RS33805 +0.7 1.1 hypothetical protein compare
BPHYT_RS19680 +0.7 6.1 glutamate--cysteine ligase compare
BPHYT_RS09310 +0.7 3.3 sensor histidine kinase compare
BPHYT_RS18415 +0.7 3.4 hypothetical protein compare
BPHYT_RS34745 +0.7 0.9 hypothetical protein compare
BPHYT_RS27195 +0.7 2.1 LacI family transcriptional regulator compare
BPHYT_RS31225 +0.7 2.8 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS23250 +0.7 1.3 hypothetical protein compare
BPHYT_RS30485 +0.7 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS26135 +0.7 2.0 ABC transporter permease compare
BPHYT_RS04865 +0.7 2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS10240 +0.7 1.0 translation initiation inhibitor compare
BPHYT_RS13325 +0.7 2.0 TetR family transcriptional regulator compare
BPHYT_RS23690 +0.7 4.3 hypothetical protein compare
BPHYT_RS06320 +0.7 2.4 chemotaxis protein CheY compare
BPHYT_RS18865 +0.7 3.4 flagellar L-ring protein FlgH compare
BPHYT_RS12535 +0.7 1.0 membrane protein compare
BPHYT_RS14845 +0.7 1.8 cysteine synthase compare
BPHYT_RS02035 +0.7 1.7 hypothetical protein compare
BPHYT_RS06065 +0.7 4.6 cytochrome C compare
BPHYT_RS32730 +0.7 0.9 histidine phosphatase compare
BPHYT_RS20790 +0.7 1.9 TetR family transcriptional regulator compare
BPHYT_RS18780 +0.7 2.8 flagellar motor switch protein FliG compare
BPHYT_RS14395 +0.6 3.3 sugar dehydratase compare
BPHYT_RS34185 +0.6 3.0 cold-shock protein compare
BPHYT_RS18885 +0.6 3.3 flagellar basal body rod modification protein FlgD compare
BPHYT_RS11795 +0.6 1.1 membrane protein compare
BPHYT_RS13315 +0.6 1.3 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS15545 +0.6 1.7 isoaspartyl peptidase compare
BPHYT_RS18830 +0.6 3.9 flagellar biosynthesis protein FliQ compare
BPHYT_RS05870 +0.6 1.7 hypothetical protein compare
BPHYT_RS18870 +0.6 3.6 flagellar basal body rod protein FlgG compare
BPHYT_RS18895 +0.6 3.4 flagellar basal body rod protein FlgB compare
BPHYT_RS10645 +0.6 1.2 cyanate hydratase compare
BPHYT_RS32870 +0.6 1.6 hypothetical protein compare
BPHYT_RS08000 +0.6 1.5 antibiotic biosynthesis monooxygenase compare
BPHYT_RS07840 +0.6 2.2 muconate cycloisomerase compare
BPHYT_RS11765 +0.6 0.9 polyamine ABC transporter permease compare
BPHYT_RS36470 +0.6 1.4 hypothetical protein compare
BPHYT_RS11480 +0.6 2.2 heme ABC transporter ATP-binding protein compare
BPHYT_RS22860 +0.6 1.0 chemotaxis protein CheY compare
BPHYT_RS33370 +0.6 1.5 LysR family transcriptional regulator compare
BPHYT_RS32860 +0.6 0.9 hypothetical protein compare
BPHYT_RS10695 +0.6 1.3 aromatic-ring-hydroxylating dioxygenase subunit beta compare
BPHYT_RS29945 +0.6 1.4 histidine kinase compare
BPHYT_RS13815 +0.6 2.2 hypothetical protein compare
BPHYT_RS36245 +0.6 3.0 hypothetical protein compare
BPHYT_RS20115 +0.6 2.2 transcriptional regulator compare
BPHYT_RS24135 +0.6 1.5 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS03015 +0.6 0.8 aldolase compare
BPHYT_RS34370 +0.6 2.2 ATPase compare
BPHYT_RS18855 +0.6 3.9 flagellar rod assembly protein FlgJ compare
BPHYT_RS14275 +0.6 1.5 hypothetical protein compare
BPHYT_RS21215 +0.6 4.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS34780 +0.6 2.7 phytoene synthase compare
BPHYT_RS11955 +0.6 1.7 hemolysin D compare
BPHYT_RS17945 +0.6 1.4 cytochrome C biogenesis protein compare
BPHYT_RS20025 +0.6 1.7 crotonase compare
BPHYT_RS29485 +0.6 0.9 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS22530 +0.6 1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS31840 +0.6 1.7 anhydrase compare
BPHYT_RS18900 +0.6 4.6 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS08385 +0.6 1.1 secretion protein compare
BPHYT_RS26285 +0.6 1.5 glycogen debranching protein compare
BPHYT_RS20055 +0.6 2.0 hypothetical protein compare
BPHYT_RS13705 +0.6 1.5 chorismate synthase compare
BPHYT_RS31515 +0.6 1.3 agmatinase compare
BPHYT_RS10740 +0.6 1.2 LuxR family transcriptional regulator compare
BPHYT_RS24975 +0.6 1.6 RNA polymerase sigma24 factor compare
BPHYT_RS18875 +0.6 2.7 flagellar basal body rod protein FlgF compare
BPHYT_RS15390 +0.6 3.4 3,4-Dihydroxy-2-butanone 4-phosphate synthase compare
BPHYT_RS07085 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS08340 +0.6 0.9 chemotaxis protein CheY compare
BPHYT_RS10850 +0.5 1.3 LysR family transcriptional regulator compare
BPHYT_RS05095 +0.5 1.9 hydroxymethylpyrimidine transporter compare
BPHYT_RS10685 +0.5 3.1 LysR family transcriptional regulator compare
BPHYT_RS11130 +0.5 2.8 chemotaxis protein compare
BPHYT_RS18925 +0.5 3.2 RNA polymerase sigma70 compare
BPHYT_RS23215 +0.5 2.4 transcriptional regulator compare
BPHYT_RS11640 +0.5 1.2 hypothetical protein compare
BPHYT_RS31245 +0.5 1.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS36185 +0.5 1.9 hypothetical protein compare
BPHYT_RS22290 +0.5 2.5 membrane protein compare
BPHYT_RS18820 +0.5 1.8 flagellar biosynthesis protein FliO compare
BPHYT_RS01170 +0.5 1.3 hypothetical protein compare
BPHYT_RS04040 +0.5 1.7 hypothetical protein compare
BPHYT_RS32365 +0.5 2.3 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS06310 +0.5 2.4 heme oxygenase compare
BPHYT_RS13105 +0.5 2.3 LacI family transcription regulator compare
BPHYT_RS14255 +0.5 4.7 ABC transporter compare
BPHYT_RS11810 +0.5 1.1 LysR family transcriptional regulator compare
BPHYT_RS21585 +0.5 1.1 short-chain dehydrogenase compare
BPHYT_RS04885 +0.5 1.7 threonine-phosphate decarboxylase compare
BPHYT_RS34030 +0.5 2.0 pilus assembly protein CpaB compare
BPHYT_RS21235 +0.5 1.7 hypothetical protein compare
BPHYT_RS05920 +0.5 1.6 rod shape-determining protein RodA compare
BPHYT_RS33610 +0.5 0.8 DNA polymerase I compare
BPHYT_RS18805 +0.5 2.2 flagellar basal body protein FliL compare
BPHYT_RS23600 +0.5 1.8 hypothetical protein compare
BPHYT_RS10980 +0.5 1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS28360 +0.5 0.4 carboxymuconolactone decarboxylase compare
BPHYT_RS06075 +0.5 3.4 hypothetical protein compare
BPHYT_RS30780 +0.5 1.6 GMC family oxidoreductase compare
BPHYT_RS13200 +0.5 1.0 molybdopterin binding oxidoreductase compare
BPHYT_RS05940 +0.5 2.6 membrane protein compare
BPHYT_RS15775 +0.5 1.2 peptide ABC transporter permease compare
BPHYT_RS23705 +0.5 3.6 hypothetical protein compare
BPHYT_RS15800 +0.5 1.8 GntR family transcriptional regulator compare
BPHYT_RS05155 +0.5 2.4 acetyltransferase GCN5 compare
BPHYT_RS03945 +0.5 1.0 hypothetical protein compare
BPHYT_RS13745 +0.5 2.0 membrane protein compare
BPHYT_RS07835 +0.5 1.2 muconolactone delta-isomerase compare
BPHYT_RS07290 +0.5 1.7 hypothetical protein compare
BPHYT_RS26525 +0.5 1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS34665 +0.5 0.9 hypothetical protein compare
BPHYT_RS11220 +0.5 2.2 LacI family transcriptional regulator compare
BPHYT_RS07920 +0.5 1.3 hypothetical protein compare
BPHYT_RS00855 +0.5 1.4 hypothetical protein compare
BPHYT_RS07515 +0.5 0.8 photosystem reaction center subunit H compare
BPHYT_RS15010 +0.5 1.9 cation transporter compare
BPHYT_RS28300 +0.5 1.0 histone nucleoid-structuring protein H-NS compare
BPHYT_RS18790 +0.5 3.0 ATP synthase compare
BPHYT_RS02665 +0.5 3.9 MFS transporter compare
BPHYT_RS24565 +0.5 1.1 membrane protein compare
BPHYT_RS15990 +0.5 2.0 heme biosynthesis protein HemY compare
BPHYT_RS02765 +0.5 1.9 cytochrome BD oxidase subunit I compare
BPHYT_RS21495 +0.5 0.7 ABC transporter compare
BPHYT_RS25180 +0.5 1.6 serine hydroxymethyltransferase compare
BPHYT_RS01825 +0.5 1.9 sugar ABC transporter substrate-binding protein compare
BPHYT_RS04860 +0.5 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS02675 +0.5 2.7 hypothetical protein compare
BPHYT_RS32750 +0.5 1.0 lipoprotein compare
BPHYT_RS07335 +0.5 1.9 nitrate ABC transporter permease compare
BPHYT_RS20095 +0.5 0.6 transcriptional regulator compare
BPHYT_RS27155 +0.5 1.0 peroxiredoxin compare
BPHYT_RS35005 +0.5 2.2 molecular chaperone DnaJ compare
BPHYT_RS29840 +0.5 1.1 polysaccharide biosynthesis protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Thallium(I) acetate in Burkholderia phytofirmans PsJN

For stress Thallium(I) acetate across organisms