Experiment set1IT035 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Nickel (II) chloride hexahydrate 0.3 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS19030 +3.4 27.1 hypothetical protein compare
CA265_RS23525 +2.8 23.0 hypothetical protein compare
CA265_RS01975 +2.7 10.0 cell division protein compare
CA265_RS22690 +2.7 20.8 hypothetical protein compare
CA265_RS09480 +2.5 21.0 magnesium transporter compare
CA265_RS15215 +2.5 20.3 two-component sensor histidine kinase compare
CA265_RS17555 +2.5 21.6 hypothetical protein compare
CA265_RS15210 +2.4 13.2 DNA-binding response regulator compare
CA265_RS07515 +2.4 17.6 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS08855 +2.4 18.7 MFS transporter compare
CA265_RS06875 +2.3 20.0 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS23505 +2.3 10.1 biopolymer transporter ExbD compare
CA265_RS06880 +2.2 17.0 RND transporter compare
CA265_RS06870 +2.2 17.2 efflux transporter periplasmic adaptor subunit compare
CA265_RS04990 +2.2 12.2 short chain dehydrogenase compare
CA265_RS02760 +2.1 5.2 hypothetical protein compare
CA265_RS12890 +2.1 15.8 hypothetical protein compare
CA265_RS23510 +2.0 12.7 energy transducer TonB compare
CA265_RS09140 +2.0 10.8 MerR family transcriptional regulator compare
CA265_RS05160 +2.0 18.2 hypothetical protein compare
CA265_RS18770 +1.9 5.3 hypothetical protein compare
CA265_RS18225 +1.9 13.9 DNA-binding response regulator compare
CA265_RS23960 +1.9 2.9 glycine cleavage system protein T compare
CA265_RS15070 +1.8 11.0 hypothetical protein compare
CA265_RS21785 +1.8 12.8 L-serine ammonia-lyase compare
CA265_RS15615 +1.8 7.5 malate dehydrogenase compare
CA265_RS18115 +1.8 13.1 gliding motility protein GldN compare
CA265_RS16005 +1.7 7.7 hypothetical protein compare
CA265_RS23615 +1.7 13.0 hemolysin conserved
CA265_RS18120 +1.7 14.5 gliding motility protein GldM compare
CA265_RS23520 +1.7 12.9 phosphate ABC transporter substrate-binding protein compare
CA265_RS19940 +1.7 14.1 hypothetical protein compare
CA265_RS06585 +1.7 10.3 hypothetical protein compare
CA265_RS23635 +1.7 14.2 gliding motility lipoprotein GldJ compare
CA265_RS23515 +1.6 5.8 hypothetical protein compare
CA265_RS14825 +1.6 4.2 outer membrane protein assembly factor BamD compare
CA265_RS03260 +1.6 11.0 multidrug ABC transporter ATP-binding protein compare
CA265_RS20350 +1.6 8.3 gliding motility lipoprotein GldH compare
CA265_RS18125 +1.6 10.3 gliding motility protein GldL compare
CA265_RS18990 +1.6 14.8 cell surface protein SprA compare
CA265_RS02765 +1.6 7.8 cell division protein ZapA compare
CA265_RS19740 +1.6 7.0 gliding motility lipoprotein GldD compare
CA265_RS17455 +1.5 6.4 hypothetical protein compare
CA265_RS17560 +1.5 7.7 peptidylprolyl isomerase compare
CA265_RS24790 +1.5 11.3 peptidylprolyl isomerase compare
CA265_RS01200 +1.5 5.8 hypothetical protein compare
CA265_RS18130 +1.5 12.4 gliding motility-associated lipoprotein compare
CA265_RS01205 +1.4 5.6 import component protein compare
CA265_RS22800 +1.4 10.5 glycosyl transferase compare
CA265_RS15085 +1.4 8.7 hypothetical protein compare
CA265_RS03295 +1.4 10.8 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS23640 +1.4 11.2 hypothetical protein compare
CA265_RS03290 +1.3 9.7 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS23985 +1.3 9.2 gliding motility lipoprotein GldB compare
CA265_RS19945 +1.3 5.7 hypothetical protein compare
CA265_RS15200 +1.2 6.3 hypothetical protein compare
CA265_RS00210 +1.2 2.3 potassium-transporting ATPase subunit F compare
CA265_RS18540 +1.2 4.0 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS05720 +1.2 5.9 hypothetical protein compare
CA265_RS15115 +1.2 7.1 porin compare
CA265_RS21060 +1.2 3.6 hypothetical protein compare
CA265_RS00655 +1.2 6.6 RNA polymerase subunit sigma-24 compare
CA265_RS00270 +1.1 2.4 hypothetical protein compare
CA265_RS08880 +1.1 8.1 chromate transporter compare
CA265_RS12665 +1.1 2.3 cold-shock protein compare
CA265_RS00230 +1.1 6.0 hypothetical protein compare
CA265_RS18530 +1.1 2.5 aspartate aminotransferase family protein compare
CA265_RS02965 +1.1 5.7 hypothetical protein compare
CA265_RS18090 +1.1 9.0 gliding motility protein compare
CA265_RS21905 +1.1 4.4 hypothetical protein compare
CA265_RS20375 +1.1 7.3 methyltransferase compare
CA265_RS13020 +1.1 6.2 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS15605 +1.0 3.7 alpha-L-fucosidase compare
CA265_RS24255 +1.0 4.3 sugar kinase compare
CA265_RS01095 +1.0 4.1 transcriptional regulator compare
CA265_RS04980 +1.0 3.7 recombination protein RecR compare
CA265_RS20320 +1.0 9.3 hypothetical protein compare
CA265_RS16155 +1.0 5.1 tRNA pseudouridine(55) synthase TruB compare
CA265_RS09335 +1.0 6.6 DUF4442 domain-containing protein compare
CA265_RS19535 +1.0 6.2 hypothetical protein compare
CA265_RS01195 +1.0 2.6 hypothetical protein compare
CA265_RS23090 +1.0 4.4 transcriptional regulator compare
CA265_RS14410 +1.0 6.1 4-amino-4-deoxychorismate lyase compare
CA265_RS21255 +1.0 7.1 hypothetical protein compare
CA265_RS23710 +1.0 4.3 esterase compare
CA265_RS20315 +0.9 8.0 hypothetical protein compare
CA265_RS13225 +0.9 6.5 exonuclease compare
CA265_RS21690 +0.9 4.3 hypothetical protein compare
CA265_RS15195 +0.9 5.3 hypothetical protein compare
CA265_RS19345 +0.9 6.7 hypothetical protein compare
CA265_RS17115 +0.9 2.6 arsenate reductase compare
CA265_RS04110 +0.9 6.1 phosphoadenosine phosphosulfate reductase compare
CA265_RS18230 +0.9 3.4 two-component sensor histidine kinase compare
CA265_RS18500 +0.9 5.1 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS04120 +0.9 5.5 sulfate adenylyltransferase compare
CA265_RS09650 +0.9 2.7 diaminopimelate decarboxylase compare
CA265_RS21865 +0.9 4.4 two-component sensor histidine kinase compare
CA265_RS23840 +0.9 5.9 S1/P1 Nuclease compare
CA265_RS09035 +0.9 4.6 anti-anti-sigma factor compare
CA265_RS14640 +0.8 2.1 UDP-glucose 4-epimerase compare
CA265_RS12745 +0.8 3.5 NUDIX hydrolase compare
CA265_RS14765 +0.8 7.2 alkaline phosphatase family protein compare
CA265_RS17440 +0.8 6.3 Fis family transcriptional regulator compare
CA265_RS18550 +0.8 0.8 N-acetyltransferase compare
CA265_RS21715 +0.8 4.3 hypothetical protein compare
CA265_RS19380 +0.8 6.1 beta-carotene 15,15'-monooxygenase compare
CA265_RS04105 +0.8 6.5 siroheme synthase compare
CA265_RS03275 +0.8 3.1 hypothetical protein compare
CA265_RS04115 +0.8 4.3 sulfate adenylyltransferase compare
CA265_RS24980 +0.8 2.6 hypothetical protein compare
CA265_RS02145 +0.8 6.5 1,4-alpha-glucan branching enzyme compare
CA265_RS10740 +0.8 5.0 DNA-binding response regulator compare
CA265_RS23675 +0.8 1.1 hypothetical protein compare
CA265_RS21130 +0.8 4.6 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS08180 +0.8 3.7 O-acetylhomoserine aminocarboxypropyltransferase compare
CA265_RS12945 +0.8 5.3 hypothetical protein compare
CA265_RS21260 +0.8 4.8 hypothetical protein compare
CA265_RS24195 +0.8 3.8 TetR family transcriptional regulator compare
CA265_RS04330 +0.7 4.0 transcriptional regulator compare
CA265_RS08445 +0.7 1.3 endonuclease compare
CA265_RS09830 +0.7 5.9 polyphosphate kinase 1 compare
CA265_RS18485 +0.7 3.7 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS14020 +0.7 5.6 ABC transporter ATP-binding protein compare
CA265_RS05070 +0.7 3.6 Na+/H+ antiporter NhaA compare
CA265_RS19140 +0.7 1.9 tRNA-Ile compare
CA265_RS17565 +0.7 3.2 hypothetical protein compare
CA265_RS21330 +0.7 5.4 TetR family transcriptional regulator compare
CA265_RS09485 +0.7 2.6 plasmid stabilization protein compare
CA265_RS22850 +0.7 4.7 MFS transporter compare
CA265_RS14535 +0.7 1.8 DUF4783 domain-containing protein compare
CA265_RS22475 +0.7 3.2 hypothetical protein compare
CA265_RS20305 +0.7 5.6 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS14705 +0.7 5.8 hypothetical protein compare
CA265_RS23035 +0.7 2.4 four-helix bundle copper-binding protein compare
CA265_RS23905 +0.7 4.4 hypothetical protein compare
CA265_RS23620 +0.7 3.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS06315 +0.7 4.2 uridine kinase compare
CA265_RS09740 +0.7 0.8 transcriptional regulator compare
CA265_RS07520 +0.7 5.0 cation diffusion facilitator family transporter compare
CA265_RS15250 +0.7 4.1 ABC transporter permease compare
CA265_RS21900 +0.7 5.6 two-component sensor histidine kinase compare
CA265_RS24355 +0.7 1.6 transcriptional regulator compare
CA265_RS04360 +0.7 5.6 hypothetical protein compare
CA265_RS19530 +0.6 3.3 asparaginase compare
CA265_RS22805 +0.6 2.9 glycosyl transferase compare
CA265_RS17570 +0.6 3.2 peptidylprolyl isomerase compare
CA265_RS20895 +0.6 4.8 penicillin-binding protein compare
CA265_RS08850 +0.6 3.1 hypothetical protein compare
CA265_RS21565 +0.6 1.0 cold-shock protein compare
CA265_RS24385 +0.6 1.5 GNAT family N-acetyltransferase compare
CA265_RS00220 +0.6 3.4 potassium-transporting ATPase subunit B compare
CA265_RS23755 +0.6 3.9 lauroyl acyltransferase compare
CA265_RS10530 +0.6 4.5 ribonuclease R compare
CA265_RS17720 +0.6 4.9 hypothetical protein compare
CA265_RS01910 +0.6 4.9 hypothetical protein compare
CA265_RS17785 +0.6 2.6 hypothetical protein compare
CA265_RS21290 +0.6 2.0 hypothetical protein compare
CA265_RS21265 +0.6 3.6 hypothetical protein compare
CA265_RS21470 +0.6 2.6 elongation factor P compare
CA265_RS24720 +0.6 4.9 multidrug transporter compare
CA265_RS00215 +0.6 3.3 potassium-transporting ATPase subunit KdpA compare
CA265_RS19040 +0.6 2.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
CA265_RS21250 +0.6 4.0 thioredoxin compare
CA265_RS01320 +0.6 1.2 hypothetical protein compare
CA265_RS12780 +0.6 1.1 hypothetical protein compare
CA265_RS00225 +0.6 2.2 potassium-transporting ATPase subunit C compare
CA265_RS23140 +0.6 2.6 hypothetical protein compare
CA265_RS23430 +0.6 2.7 hypothetical protein compare
CA265_RS23355 +0.6 2.5 hypothetical protein compare
CA265_RS18240 +0.6 3.1 hypothetical protein compare
CA265_RS00165 +0.6 2.8 hypothetical protein compare
CA265_RS23045 +0.6 2.2 cold-shock protein compare
CA265_RS04245 +0.6 2.8 hypothetical protein compare
CA265_RS24680 +0.6 3.3 hypothetical protein compare
CA265_RS13255 +0.6 3.6 leucine dehydrogenase compare
CA265_RS03255 +0.6 3.8 glycerophosphodiester phosphodiesterase compare
CA265_RS15165 +0.6 3.6 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS08085 +0.6 3.7 aminodeoxychorismate lyase compare
CA265_RS04790 +0.6 2.5 hypothetical protein compare
CA265_RS05185 +0.6 3.8 hypothetical protein compare
CA265_RS17145 +0.6 2.2 malate:quinone oxidoreductase compare
CA265_RS01960 +0.5 0.8 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS04010 +0.5 3.9 hypothetical protein compare
CA265_RS13740 +0.5 3.4 cysteine synthase compare
CA265_RS14615 +0.5 1.8 hypothetical protein compare
CA265_RS18775 +0.5 1.9 hypothetical protein compare
CA265_RS21030 +0.5 3.5 hypothetical protein compare
CA265_RS19405 +0.5 2.8 transcriptional regulator compare
CA265_RS20975 +0.5 2.3 hypothetical protein compare
CA265_RS19465 +0.5 1.7 protein tyrosine phosphatase compare
CA265_RS15865 +0.5 1.4 cupin compare
CA265_RS16105 +0.5 0.9 hypothetical protein compare
CA265_RS16470 +0.5 3.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
CA265_RS00395 +0.5 2.4 hypothetical protein compare
CA265_RS20845 +0.5 3.4 MBL fold hydrolase compare
CA265_RS21620 +0.5 3.6 hybrid sensor histidine kinase/response regulator compare
CA265_RS16515 +0.5 1.0 hypothetical protein compare
CA265_RS21395 +0.5 1.5 hypothetical protein compare
CA265_RS03235 +0.5 2.3 hypothetical protein compare
CA265_RS17765 +0.5 4.7 SusC/RagA family protein compare


Specific Phenotypes

For 15 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress Nickel (II) chloride hexahydrate across organisms