Experiment set1IT035 for Methanococcus maripaludis JJ

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08855 -6.3 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS07665 -5.6 -29.9 formate dehydrogenase subunit alpha compare
MMJJ_RS06260 -5.5 -6.5 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS07670 -5.4 -19.7 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS05155 -5.4 -3.7 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS08005 -5.3 -18.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS03115 -5.1 -6.9 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS03065 -5.1 -15.3 CBS domain-containing protein compare
MMJJ_RS07655 -5.1 -14.4 hypothetical protein compare
MMJJ_RS04595 -5.0 -6.0 hypothetical protein compare
MMJJ_RS02055 -5.0 -13.5 GTP 3',8-cyclase MoaA compare
MMJJ_RS06860 -4.9 -3.3 hypothetical protein compare
MMJJ_RS04485 -4.7 -10.0 riboflavin synthase compare
MMJJ_RS05535 -4.7 -11.7 hypothetical protein compare
MMJJ_RS00580 -4.6 -2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS08080 -4.6 -6.2 TIGR00300 family protein compare
MMJJ_RS07660 -4.5 -9.8 carbonic anhydrase compare
MMJJ_RS06725 -4.5 -9.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06915 -4.4 -17.9 helix-turn-helix domain-containing protein compare
MMJJ_RS00075 -4.3 -12.9 AAA family ATPase compare
MMJJ_RS00040 -4.3 -10.4 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS06510 -4.3 -3.0 LL-diaminopimelate aminotransferase compare
MMJJ_RS00450 -4.3 -2.4 DUF126 domain-containing protein compare
MMJJ_RS03055 -4.3 -2.7 hypothetical protein compare
MMJJ_RS07650 -4.2 -22.2 formate/nitrite transporter family protein compare
MMJJ_RS03920 -4.2 -18.3 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS07245 -4.2 -4.0 amidohydrolase family protein compare
MMJJ_RS00035 -4.2 -19.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS04200 -4.2 -5.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS08020 -4.1 -9.4 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00645 -4.1 -11.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS04800 -4.1 -2.8 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS05575 -4.1 -3.9 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07640 -4.1 -24.4 cache domain-containing protein compare
MMJJ_RS06600 -4.1 -4.0 DUF555 domain-containing protein compare
MMJJ_RS00055 -4.0 -12.6 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS01935 -4.0 -2.8 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07975 -4.0 -12.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS03895 -4.0 -3.8 hydrogenase expression/formation protein HypE compare
MMJJ_RS02045 -4.0 -2.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS06855 -4.0 -1.9 DUF2104 domain-containing protein compare
MMJJ_RS00050 -4.0 -9.9 AAA family ATPase compare
MMJJ_RS05445 -4.0 -2.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08535 -4.0 -2.7 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS06155 -4.0 -5.3 phosphatidylglycerophosphatase A compare
MMJJ_RS00060 -4.0 -17.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS00065 -4.0 -9.9 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS00370 -3.9 -2.2 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07720 -3.9 -2.1 UPF0058 family protein compare
MMJJ_RS08065 -3.9 -3.5 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS04145 -3.9 -11.0 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS07980 -3.9 -13.9 biotin synthase BioB compare
MMJJ_RS08000 -3.9 -10.9 HesA/MoeB/ThiF family protein compare
MMJJ_RS08625 -3.9 -2.7 magnesium/cobalt transporter CorA compare
MMJJ_RS01750 -3.9 -2.6 ferrous iron transport protein A compare
MMJJ_RS00045 -3.9 -17.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS06375 -3.8 -3.7 UbiX family flavin prenyltransferase compare
MMJJ_RS03500 -3.8 -11.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMJJ_RS03620 -3.8 -4.4 DUF2097 domain-containing protein compare
MMJJ_RS00935 -3.8 -13.5 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS07160 -3.8 -20.8 M20 family metallo-hydrolase compare
MMJJ_RS06490 -3.7 -2.5 methanogenesis marker 2 protein compare
MMJJ_RS04155 -3.7 -3.6 hypothetical protein compare
MMJJ_RS07995 -3.7 -6.9 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS02200 -3.7 -7.4 chorismate pyruvate-lyase family protein compare
MMJJ_RS04685 -3.7 -7.3 carbamoyltransferase HypF compare
MMJJ_RS06240 -3.7 -3.4 dihydropteroate synthase-like protein compare
MMJJ_RS06270 -3.7 -9.0 dethiobiotin synthase compare
MMJJ_RS02090 -3.6 -2.5 tyramine--L-glutamate ligase compare
MMJJ_RS06265 -3.6 -14.9 8-amino-7-oxononanoate synthase compare
MMJJ_RS03150 -3.6 -4.3 2-phospho-L-lactate transferase compare
MMJJ_RS07635 -3.6 -13.5 response regulator transcription factor compare
MMJJ_RS00125 -3.6 -2.5 KEOPS complex subunit Cgi121 compare
MMJJ_RS03865 -3.6 -1.6 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08095 -3.6 -3.4 cobyric acid synthase CobQ compare
MMJJ_RS09375 -3.6 -1.7 hypothetical protein compare
MMJJ_RS06875 -3.6 -2.2 hypothetical protein compare
MMJJ_RS03200 -3.5 -2.2 uroporphyrinogen-III synthase compare
MMJJ_RS05190 -3.5 -8.4 gamma carbonic anhydrase family protein compare
MMJJ_RS08035 -3.5 -9.1 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS03270 -3.5 -1.9 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS09135 -3.5 -11.3 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS06040 -3.5 -2.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS04700 -3.4 -5.6 deoxyhypusine synthase compare
MMJJ_RS06930 -3.4 -3.1 type II methionyl aminopeptidase compare
MMJJ_RS02040 -3.4 -2.3 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06175 -3.4 -2.1 DUF1743 domain-containing protein compare
MMJJ_RS03005 -3.4 -2.3 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS00275 -3.4 -2.8 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS07950 -3.4 -2.3 4Fe-4S binding protein compare
MMJJ_RS05950 -3.4 -2.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03125 -3.4 -5.0 GMC oxidoreductase compare
MMJJ_RS03060 -3.3 -3.8 methanogenesis marker 7 protein compare
MMJJ_RS03670 -3.3 -3.2 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS00570 -3.3 -1.6 ribonuclease P compare
MMJJ_RS00205 -3.3 -4.9 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS04050 -3.3 -2.1 dihydroneopterin aldolase family protein compare
MMJJ_RS07725 -3.3 -7.3 DNA primase DnaG compare
MMJJ_RS04475 -3.3 -5.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06180 -3.2 -2.2 tryptophan--tRNA ligase compare
MMJJ_RS04650 -3.2 -5.2 nitrogenase iron protein compare
MMJJ_RS03170 -3.2 -7.7 DUF5612 domain-containing protein compare
MMJJ_RS03295 -3.2 -14.8 PHP domain-containing protein compare
MMJJ_RS05070 -3.2 -1.9 DNA primase catalytic subunit PriS compare
MMJJ_RS08795 -3.2 -2.1 phosphoglucosamine mutase compare
MMJJ_RS06010 -3.1 -6.0 hypothetical protein compare
MMJJ_RS06715 -3.1 -12.6 lactaldehyde dehydrogenase compare
MMJJ_RS07350 -3.1 -3.6 4Fe-4S binding protein compare
MMJJ_RS04995 -3.1 -5.1 Tfx family DNA-binding protein compare
MMJJ_RS00070 -3.1 -2.9 CooT family nickel-binding protein compare
MMJJ_RS08340 -3.1 -5.0 archaeoflavoprotein AfpA compare
MMJJ_RS06700 -3.1 -5.8 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06695 -3.1 -2.1 amidohydrolase compare
MMJJ_RS05065 -3.1 -4.7 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS01600 -3.1 -2.1 radical SAM protein compare
MMJJ_RS06485 -3.1 -2.9 phosphoglycerate kinase compare
MMJJ_RS03110 -3.1 -3.5 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS05995 -3.0 -2.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS06215 -3.0 -4.1 agmatinase compare
MMJJ_RS09190 -3.0 -2.0 tryptophan synthase subunit beta compare
MMJJ_RS05260 -3.0 -4.9 ATP-grasp domain-containing protein compare
MMJJ_RS07360 -3.0 -1.4 TIGR00269 family protein compare
MMJJ_RS08330 -3.0 -3.4 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00560 -3.0 -3.5 homoisocitrate dehydrogenase compare
MMJJ_RS08155 -3.0 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06625 -3.0 -1.6 pyruvate synthase subunit PorB compare
MMJJ_RS00080 -3.0 -12.0 DUF166 domain-containing protein compare
MMJJ_RS06255 -3.0 -4.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01350 -3.0 -7.1 sodium:proton antiporter compare
MMJJ_RS05490 -3.0 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS03310 -2.9 -2.8 hypothetical protein compare
MMJJ_RS06220 -2.9 -5.7 polyamine aminopropyltransferase compare
MMJJ_RS08840 -2.9 -4.7 calcium/sodium antiporter compare
MMJJ_RS08010 -2.9 -6.9 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06760 -2.9 -2.8 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS05540 -2.9 -18.7 LysR family transcriptional regulator compare
MMJJ_RS03580 -2.9 -3.8 TIGR00303 family protein compare
MMJJ_RS07355 -2.9 -5.7 MoaD/ThiS family protein compare
MMJJ_RS03190 -2.9 -2.0 phosphopyruvate hydratase compare
MMJJ_RS01360 -2.9 -1.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06390 -2.9 -1.6 NADPH-dependent F420 reductase compare
MMJJ_RS02920 -2.9 -2.6 30S ribosomal protein S27ae compare
MMJJ_RS05720 -2.9 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06015 -2.9 -11.9 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS03615 -2.9 -1.9 cobalt-precorrin-8 methylmutase compare
MMJJ_RS06840 -2.8 -1.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS08320 -2.8 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07155 -2.8 -10.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05935 -2.8 -2.2 Era-like GTP-binding protein compare
MMJJ_RS03490 -2.8 -2.7 ribonuclease VapC compare
MMJJ_RS04150 -2.8 -3.6 DUF5379 domain-containing protein compare
MMJJ_RS04790 -2.8 -4.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS05930 -2.8 -1.7 cell division protein SepF compare
MMJJ_RS06050 -2.8 -8.0 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06020 -2.8 -7.3 hypothetical protein compare
MMJJ_RS03230 -2.8 -4.4 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS07430 -2.8 -3.8 ribonuclease VapC compare
MMJJ_RS06005 -2.7 -10.0 energy conserving hydrogenase EhbF compare
MMJJ_RS00475 -2.7 -1.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03765 -2.7 -9.6 hypothetical protein compare
MMJJ_RS08250 -2.7 -6.2 hydrogenase maturation peptidase HycI compare
MMJJ_RS07470 -2.7 -2.3 50S ribosome-binding GTPase compare
MMJJ_RS05415 -2.7 -1.7 hypothetical protein compare
MMJJ_RS02190 -2.7 -12.9 molybdopterin biosynthesis protein compare
MMJJ_RS00270 -2.7 -2.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03875 -2.7 -4.2 CBS domain-containing protein compare
MMJJ_RS05375 -2.6 -14.2 radical SAM protein compare
MMJJ_RS05370 -2.6 -9.6 LysR family transcriptional regulator compare
MMJJ_RS02935 -2.6 -2.9 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS07190 -2.6 -3.0 RtcB family protein compare
MMJJ_RS01860 -2.6 -14.1 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS04505 -2.6 -7.7 CDC48 family AAA ATPase compare
MMJJ_RS01865 -2.6 -6.4 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS04520 -2.6 -5.5 coenzyme F430 synthase compare
MMJJ_RS09130 -2.6 -1.4 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS05330 -2.6 -1.7 DNA polymerase II large subunit compare
MMJJ_RS04975 -2.6 -2.1 glycosyltransferase family 4 protein compare
MMJJ_RS06225 -2.5 -1.6 adenosylmethionine decarboxylase compare
MMJJ_RS01880 -2.5 -2.8 RlmE family RNA methyltransferase compare
MMJJ_RS05810 -2.5 -4.7 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06025 -2.5 -15.3 4Fe-4S binding protein compare
MMJJ_RS02275 -2.5 -4.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06000 -2.5 -4.1 cation:proton antiporter subunit C compare
MMJJ_RS07705 -2.5 -1.7 GTP-binding protein EngB compare
MMJJ_RS06905 -2.5 -2.4 hypothetical protein compare
MMJJ_RS04125 -2.5 -10.9 tRNA (guanine(10)-N(2))-dimethyltransferase compare
MMJJ_RS09175 -2.5 -1.0 anthranilate synthase component I compare
MMJJ_RS01200 -2.5 -1.7 PRC-barrel domain-containing protein compare
MMJJ_RS07410 -2.5 -3.3 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03225 -2.5 -3.3 4Fe-4S binding protein compare
MMJJ_RS04730 -2.5 -1.7 tyrosine decarboxylase MfnA compare
MMJJ_RS07785 -2.5 -2.3 fumarate reductase subunit A compare
MMJJ_RS03760 -2.5 -3.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS04675 -2.5 -6.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS08870 -2.4 -1.3 2-isopropylmalate synthase compare
MMJJ_RS06035 -2.4 -9.6 NADH-quinone oxidoreductase subunit B family protein compare
MMJJ_RS06110 -2.4 -2.2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06910 -2.4 -1.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05620 -2.4 -2.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03095 -2.4 -2.2 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in rich t2 experiments