Experiment set1IT034 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -5.5 -5.3 indole-3-glycerol-phosphate synthase compare
AO356_13410 -5.1 -9.3 homoserine O-acetyltransferase compare
AO356_07565 -5.1 -6.1 lactate utilization protein B/C conserved
AO356_21440 -5.0 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_21405 -5.0 -4.8 3-isopropylmalate dehydratase compare
AO356_14435 -4.8 -7.3 anthranilate phosphoribosyltransferase compare
AO356_08635 -4.8 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21415 -4.8 -11.9 3-isopropylmalate dehydrogenase compare
AO356_09525 -4.8 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14420 -4.6 -14.0 anthranilate synthase compare
AO356_12525 -4.5 -9.6 acetylglutamate kinase compare
AO356_06970 -4.5 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_14430 -4.4 -9.1 anthranilate synthase compare
AO356_07560 -4.4 -14.0 (Fe-S)-binding protein conserved
AO356_13405 -4.4 -9.7 methionine biosynthesis protein MetW compare
AO356_18245 -4.4 -8.3 DeoR family transcriptional regulator compare
AO356_06965 -4.3 -8.3 histidinol dehydrogenase compare
AO356_09815 -4.3 -5.9 imidazoleglycerol-phosphate dehydratase compare
AO356_09520 -4.3 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_16175 -4.2 -7.1 acetolactate synthase 3 regulatory subunit compare
AO356_21465 -4.2 -4.1 amidophosphoribosyltransferase compare
AO356_10915 -4.2 -10.7 tryptophan synthase subunit beta compare
AO356_13605 -4.1 -6.9 5,10-methylenetetrahydrofolate reductase compare
AO356_18325 -4.1 -11.8 argininosuccinate synthase compare
AO356_13250 -4.1 -9.8 dihydroxy-acid dehydratase compare
AO356_13085 -4.1 -10.2 N-acetylglutamate synthase compare
AO356_00560 -4.0 -2.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_02175 -3.9 -10.0 transaldolase compare
AO356_18275 -3.9 -13.6 ornithine carbamoyltransferase compare
AO356_00555 -3.9 -11.3 sulfite reductase compare
AO356_21400 -3.9 -8.5 isopropylmalate isomerase compare
AO356_16170 -3.8 -11.8 acetolactate synthase 3 catalytic subunit compare
AO356_09375 -3.8 -21.7 glutamate synthase compare
AO356_16180 -3.8 -15.1 ketol-acid reductoisomerase compare
AO356_09810 -3.7 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09370 -3.7 -13.7 glutamate synthase compare
AO356_19045 -3.7 -12.5 chemotaxis protein CheY compare
AO356_02265 -3.7 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_08735 -3.6 -13.9 phosphoserine phosphatase compare
AO356_12520 -3.6 -2.4 orotate phosphoribosyltransferase compare
AO356_22200 -3.5 -9.2 sirohydrochlorin ferrochelatase compare
AO356_12025 -3.5 -15.6 pyruvate carboxylase subunit B compare
AO356_16075 -3.5 -5.8 Fis family transcriptional regulator compare
AO356_19090 -3.5 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_10340 -3.4 -14.1 phosphoserine phosphatase compare
AO356_19050 -3.4 -3.3 cysteine synthase compare
AO356_09800 -3.4 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_07550 -3.4 -8.2 L-lactate and D-lactate permease (lctP family) (from data) conserved
AO356_12015 -3.4 -12.1 LysR family transcriptional regulator compare
AO356_07555 -3.4 -10.2 oxidoreductase conserved
AO356_10910 -3.3 -9.2 tryptophan synthase subunit alpha compare
AO356_12020 -3.3 -13.8 pyruvate carboxylase subunit A compare
AO356_08905 -3.3 -2.2 glycosyl transferase compare
AO356_06550 -3.2 -8.9 2-isopropylmalate synthase compare
AO356_21470 -3.2 -7.5 O-succinylhomoserine sulfhydrylase compare
AO356_03405 -3.2 -4.8 serine acetyltransferase compare
AO356_19795 -3.2 -3.7 glycerol-3-phosphate dehydrogenase compare
AO356_17520 -3.2 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_10300 -3.2 -5.7 3-phosphoglycerate dehydrogenase compare
AO356_00355 -3.1 -10.0 chemotaxis protein CheY compare
AO356_19085 -3.1 -8.8 phosphoribosylglycinamide formyltransferase compare
AO356_15165 -3.1 -2.9 protein cII compare
AO356_22795 -2.9 -2.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_14295 -2.9 -2.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_11610 -2.8 -1.9 glycerol acyltransferase compare
AO356_27215 -2.7 -4.1 hypothetical protein compare
AO356_12780 -2.6 -7.2 argininosuccinate lyase compare
AO356_01750 -2.5 -3.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_18730 -2.5 -9.3 arginine N-succinyltransferase compare
AO356_07480 -2.5 -3.3 carbamoyl phosphate synthase large subunit compare
AO356_27210 -2.4 -9.4 hypothetical protein compare
AO356_08890 -2.4 -9.1 glycosyltransferase compare
AO356_10380 -2.4 -11.4 ATPase P compare
AO356_20155 -2.4 -7.5 phosphate acyltransferase compare
AO356_09795 -2.3 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_08895 -2.2 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_01745 -2.2 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_07910 -2.2 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_27205 -2.1 -7.0 hypothetical protein compare
AO356_11315 -2.1 -1.4 shikimate dehydrogenase compare
AO356_19425 -2.1 -2.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_06960 -2.0 -6.8 histidinol-phosphate aminotransferase compare
AO356_10350 -2.0 -10.6 phosphoenolpyruvate-protein phosphotransferase compare
AO356_03810 -2.0 -5.3 anti-anti-sigma factor compare
AO356_15815 -1.9 -2.3 gamma-glutamyl kinase compare
AO356_05010 -1.9 -9.5 diguanylate cyclase compare
AO356_03535 -1.9 -4.9 BolA family transcriptional regulator conserved
AO356_02190 -1.9 -7.1 hypothetical protein compare
AO356_21330 -1.9 -8.9 aromatic amino acid aminotransferase compare
AO356_20830 -1.8 -3.4 phosphoadenosine phosphosulfate reductase compare
AO356_12475 -1.8 -8.6 reactive intermediate/imine deaminase compare
AO356_10585 -1.8 -9.7 hypothetical protein compare
AO356_08985 -1.8 -1.6 hypothetical protein compare
AO356_11585 -1.8 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_07000 -1.8 -3.6 ABC transporter permease compare
AO356_02315 -1.8 -3.9 DNA topoisomerase I compare
AO356_01545 -1.8 -1.8 hypothetical protein compare
AO356_00880 -1.7 -1.6 integration host factor subunit alpha compare
AO356_04560 -1.7 -2.7 serine peptidase compare
AO356_24845 -1.7 -2.8 ATPase compare
AO356_02325 -1.7 -2.4 3-ketoacyl-CoA thiolase compare
AO356_18020 -1.7 -3.5 ATP-dependent DNA helicase RuvA compare
AO356_14135 -1.6 -10.8 biotin synthase compare
AO356_18725 -1.6 -5.2 acetylornithine aminotransferase compare
AO356_10920 -1.6 -6.8 LysR family transcriptional regulator compare
AO356_10345 -1.6 -4.7 RNA pyrophosphohydrolase compare
AO356_16870 -1.6 -8.3 benzoate transporter compare
AO356_05630 -1.5 -3.8 LysR family transcriptional regulator compare
AO356_15265 -1.5 -6.3 murein hydrolase transporter LrgA compare
AO356_10000 -1.5 -4.6 hypothetical protein compare
AO356_13455 -1.5 -4.3 uracil phosphoribosyltransferase compare
AO356_13595 -1.5 -7.7 amino acid ABC transporter substrate-binding protein compare
AO356_27230 -1.5 -4.7 hypothetical protein compare
AO356_06575 -1.4 -2.7 outer membrane protein assembly factor BamB compare
AO356_10330 -1.4 -9.4 threonine dehydratase compare
AO356_07915 -1.4 -2.7 exodeoxyribonuclease V subunit beta compare
AO356_11025 -1.4 -4.6 transcriptional regulator PhoU compare
AO356_27250 -1.4 -4.3 hypothetical protein compare
AO356_12895 -1.4 -11.5 polyphosphate kinase compare
AO356_08975 -1.3 -8.3 diguanylate cyclase compare
AO356_10140 -1.3 -6.3 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_03095 -1.3 -6.1 protease HtpX compare
AO356_01555 -1.3 -6.0 acyl-CoA dehydrogenase compare
AO356_06980 -1.3 -3.9 BolA family transcriptional regulator compare
AO356_18735 -1.3 -4.4 arginine N-succinyltransferase compare
AO356_06990 -1.3 -4.0 toluene tolerance protein compare
AO356_17890 -1.3 -2.3 H-NS histone compare
AO356_03415 -1.3 -6.5 oxidoreductase compare
AO356_14915 -1.3 -3.2 methyltransferase compare
AO356_21460 -1.2 -2.8 colicin V production CvpA compare
AO356_29160 -1.2 -2.4 (2Fe-2S)-binding protein compare
AO356_02290 -1.2 -2.6 TetR family transcriptional regulator compare
AO356_10005 -1.2 -5.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_13445 -1.2 -1.3 dihydroorotase compare
AO356_06385 -1.1 -2.6 recombinase XerD compare
AO356_16600 -1.1 -1.9 malate:quinone oxidoreductase compare
AO356_18805 -1.1 -0.9 magnesium transporter compare
AO356_16665 -1.1 -7.8 sulfate adenylyltransferase compare
AO356_07005 -1.1 -1.7 ABC transporter ATP-binding protein compare
AO356_17065 -1.1 -1.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_03400 -1.1 -4.3 aminotransferase DegT compare
AO356_12725 -1.1 -3.3 recombinase XerC compare
AO356_03375 -1.1 -1.2 ExsB family protein compare
AO356_15690 -1.1 -2.5 carbon starvation protein A compare
AO356_03070 -1.1 -7.1 histidine kinase compare
AO356_09420 -1.1 -9.3 peptidase compare
AO356_16050 -1.1 -2.3 glucose-6-phosphate isomerase compare
AO356_06250 -1.1 -3.3 chemotaxis protein CheY compare
AO356_10860 -1.1 -7.2 NADP transhydrogenase subunit alpha conserved
AO356_08875 -1.1 -2.3 toluene tolerance protein compare
AO356_09995 -1.1 -5.4 LysR family transcriptional regulator compare
AO356_17485 -1.1 -3.5 elongation factor 4 compare
AO356_27615 -1.1 -3.0 hypothetical protein compare
AO356_16095 -1.0 -5.5 molecular chaperone DnaK compare
AO356_12745 -1.0 -2.6 iron donor protein CyaY compare
AO356_09425 -1.0 -5.2 malate dehydrogenase compare
AO356_02860 -1.0 -1.3 histidine kinase compare
AO356_06005 -1.0 -3.0 zinc metallopeptidase RseP compare
AO356_12485 -1.0 -3.0 DNA-directed RNA polymerase subunit omega compare
AO356_09835 -1.0 -3.7 iron transporter compare
AO356_22330 -1.0 -2.4 hypothetical protein compare
AO356_08930 -1.0 -1.7 heptose kinase compare
AO356_30375 -1.0 -1.9 hypothetical protein compare
AO356_06995 -1.0 -3.9 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_27585 -0.9 -2.9 AcrR family transcriptional regulator compare
AO356_15270 -0.9 -3.0 hypothetical protein compare
AO356_03800 -0.9 -1.5 histidine kinase compare
AO356_17950 -0.9 -4.8 histidine kinase compare
AO356_19165 -0.9 -2.7 adenosylcobinamide kinase compare
AO356_22825 -0.9 -2.4 transcriptional regulator compare
AO356_03345 -0.9 -5.1 hypothetical protein compare
AO356_16670 -0.9 -6.3 adenylylsulfate kinase compare
AO356_08235 -0.9 -4.9 histidine kinase compare
AO356_16085 -0.9 -3.4 MFS transporter compare
AO356_10870 -0.9 -6.3 NAD synthetase compare
AO356_27180 -0.9 -2.3 hypothetical protein compare
AO356_10865 -0.9 -2.8 NAD(P) transhydrogenase compare
AO356_18715 -0.8 -2.5 L-Arginine ABC transporter, ATPase component (from data) compare
AO356_04460 -0.8 -1.9 sugar translocase compare
AO356_27390 -0.8 -1.9 ATPase compare
AO356_12380 -0.8 -4.1 ATP-dependent DNA helicase RecG compare
AO356_04570 -0.8 -4.0 RNA polymerase subunit sigma compare
AO356_13685 -0.8 -1.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_00575 -0.8 -1.8 SCP-2 family sterol carrier protein compare
AO356_17985 -0.8 -3.1 cold-shock protein compare
AO356_15305 -0.8 -2.2 50S rRNA methyltransferase compare
AO356_17020 -0.8 -3.1 cytochrome D ubiquinol oxidase subunit III compare
AO356_21410 -0.8 -1.4 SAM-dependent methyltransferase compare
AO356_11410 -0.8 -1.2 hypothetical protein compare
AO356_07495 -0.8 -2.2 molecular chaperone DnaJ compare
AO356_29125 -0.8 -1.3 vanillate monooxygenase compare
AO356_14335 -0.8 -2.4 rRNA methyltransferase compare
AO356_07020 -0.8 -1.3 LPS export ABC transporter periplasmic protein LptC compare
AO356_03435 -0.8 -2.0 integration host factor subunit beta compare
AO356_08065 -0.8 -5.4 copper-transporting ATPase compare
AO356_03780 -0.8 -1.3 flagellar motor switch protein compare
AO356_04575 -0.8 -4.9 RNA polymerase subunit sigma compare
AO356_27200 -0.7 -1.5 hypothetical protein compare
AO356_11030 -0.7 -4.9 phosphate ABC transporter ATP-binding protein compare
AO356_14020 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Sodium L-Lactate in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium L-Lactate across organisms