Experiment set1IT034 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS20650 +1.1 1.9 hypothetical protein compare
CA265_RS19955 +1.1 4.1 hypothetical protein compare
CA265_RS19465 +1.0 4.7 protein tyrosine phosphatase compare
CA265_RS08070 +0.9 2.2 tRNA-Ser compare
CA265_RS16515 +0.8 1.8 hypothetical protein compare
CA265_RS10540 +0.8 2.2 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS07755 +0.7 2.1 hypothetical protein compare
CA265_RS11920 +0.6 1.5 histone H1 compare
CA265_RS23305 +0.6 1.1 hypothetical protein compare
CA265_RS24910 +0.6 3.1 GNAT family N-acetyltransferase compare
CA265_RS24355 +0.6 2.5 transcriptional regulator compare
CA265_RS00040 +0.6 2.0 hypothetical protein compare
CA265_RS18540 +0.6 2.0 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS15165 +0.5 3.3 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS25030 +0.5 1.6 hypothetical protein compare
CA265_RS18530 +0.5 1.4 aspartate aminotransferase family protein compare
CA265_RS00250 +0.5 2.1 oxidoreductase compare
CA265_RS16615 +0.5 1.4 hypothetical protein compare
CA265_RS15035 +0.5 2.2 prevent-host-death protein compare
CA265_RS23545 +0.5 1.0 NADH dehydrogenase subunit D compare
CA265_RS18770 +0.5 2.7 hypothetical protein compare
CA265_RS17025 +0.5 1.3 hypothetical protein compare
CA265_RS23675 +0.5 1.6 hypothetical protein compare
CA265_RS24815 +0.5 1.3 hypothetical protein compare
CA265_RS15815 +0.5 1.2 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS20440 +0.5 2.4 hypothetical protein compare
CA265_RS01565 +0.5 2.3 circadian clock protein KaiB compare
CA265_RS21835 +0.5 1.0 hypothetical protein compare
CA265_RS22490 +0.4 1.2 MarR family transcriptional regulator compare
CA265_RS11900 +0.4 1.8 hypothetical protein compare
CA265_RS17125 +0.4 2.1 DNA-binding response regulator compare
CA265_RS16105 +0.4 1.3 hypothetical protein compare
CA265_RS18275 +0.4 1.8 pyrophosphatase compare
CA265_RS19680 +0.4 2.6 DNA-binding transcriptional regulator OxyR compare
CA265_RS18845 +0.4 2.2 GNAT family N-acetyltransferase compare
CA265_RS24530 +0.4 2.6 hypothetical protein compare
CA265_RS19535 +0.4 2.8 hypothetical protein compare
CA265_RS10665 +0.4 2.8 Rossman fold protein, TIGR00730 family compare
CA265_RS20570 +0.4 1.6 hypothetical protein compare
CA265_RS25410 +0.4 3.2 gluconate kinase compare
CA265_RS03280 +0.4 1.4 hypothetical protein compare
CA265_RS02795 +0.4 1.0 hypothetical protein compare
CA265_RS04295 +0.4 1.1 transcriptional regulator compare
CA265_RS01200 +0.4 2.4 hypothetical protein compare
CA265_RS20315 +0.4 3.4 hypothetical protein compare
CA265_RS24480 +0.4 1.3 hypothetical protein compare
CA265_RS07470 +0.4 1.7 hypothetical protein compare
CA265_RS09610 +0.4 2.3 heat-shock protein compare
CA265_RS24005 +0.4 1.1 OsmC family peroxiredoxin compare
CA265_RS18745 +0.4 0.5 hypothetical protein compare
CA265_RS14825 +0.4 0.9 outer membrane protein assembly factor BamD compare
CA265_RS20320 +0.4 3.5 hypothetical protein compare
CA265_RS19860 +0.4 1.6 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS18550 +0.4 0.7 N-acetyltransferase compare
CA265_RS21840 +0.4 1.7 phosphohydrolase compare
CA265_RS16820 +0.4 1.6 type I methionyl aminopeptidase compare
CA265_RS21450 +0.4 2.2 imidazolonepropionase compare
CA265_RS12780 +0.4 0.9 hypothetical protein compare
CA265_RS24490 +0.4 1.7 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS04245 +0.4 1.3 hypothetical protein compare
CA265_RS22540 +0.4 1.5 hypothetical protein compare
CA265_RS20695 +0.4 0.6 hypothetical protein compare
CA265_RS11940 +0.4 1.1 hypothetical protein compare
CA265_RS19420 +0.4 0.6 hypothetical protein compare
CA265_RS00525 +0.4 1.2 aldo/keto reductase compare
CA265_RS02425 +0.4 1.7 GTP cyclohydrolase compare
CA265_RS00360 +0.4 1.7 hypothetical protein compare
CA265_RS19170 +0.3 2.1 chromosome segregation protein ScpA compare
CA265_RS22285 +0.3 2.2 LysR family transcriptional regulator compare
CA265_RS01150 +0.3 1.7 hypothetical protein compare
CA265_RS12745 +0.3 1.5 NUDIX hydrolase compare
CA265_RS12800 +0.3 1.6 NAD(P)H-dependent oxidoreductase compare
CA265_RS05775 +0.3 2.1 hypothetical protein compare
CA265_RS07100 +0.3 2.2 DUF4440 domain-containing protein compare
CA265_RS00265 +0.3 1.1 RNA polymerase sigma-70 factor compare
CA265_RS02170 +0.3 1.2 hypothetical protein compare
CA265_RS17060 +0.3 2.1 adenylyl-sulfate kinase compare
CA265_RS17940 +0.3 1.7 hypothetical protein compare
CA265_RS03070 +0.3 1.7 sec-independent protein translocase TatC compare
CA265_RS19945 +0.3 1.7 hypothetical protein compare
CA265_RS18525 +0.3 1.2 four helix bundle protein compare
CA265_RS15280 +0.3 2.1 glycine C-acetyltransferase compare
CA265_RS05940 +0.3 0.8 hypothetical protein compare
CA265_RS10030 +0.3 1.9 hypothetical protein compare
CA265_RS18115 +0.3 2.2 gliding motility protein GldN compare
CA265_RS22455 +0.3 2.0 hypothetical protein compare
CA265_RS22475 +0.3 1.5 hypothetical protein compare
CA265_RS12200 +0.3 2.4 hypothetical protein compare
CA265_RS23120 +0.3 1.2 hypothetical protein compare
CA265_RS21435 +0.3 1.2 hypothetical protein compare
CA265_RS16685 +0.3 2.0 ATPase compare
CA265_RS15820 +0.3 1.6 hypothetical protein compare
CA265_RS23835 +0.3 1.7 hypothetical protein compare
CA265_RS21030 +0.3 1.8 hypothetical protein compare
CA265_RS09395 +0.3 1.0 hypothetical protein compare
CA265_RS21555 +0.3 1.3 hypothetical protein compare
CA265_RS18255 +0.3 1.2 hypothetical protein compare
CA265_RS14170 +0.3 1.6 DNA repair protein compare
CA265_RS21425 +0.3 2.3 hypothetical protein compare
CA265_RS05415 +0.3 2.0 hypothetical protein compare
CA265_RS24160 +0.3 1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
CA265_RS16195 +0.3 2.0 hypothetical protein compare
CA265_RS22260 +0.3 1.5 hypothetical protein compare
CA265_RS13625 +0.3 1.6 hypothetical protein compare
CA265_RS14935 +0.3 2.5 hypothetical protein compare
CA265_RS21310 +0.3 1.8 hypothetical protein compare
CA265_RS20925 +0.3 1.6 hypothetical protein compare
CA265_RS18265 +0.3 1.6 hypothetical protein compare
CA265_RS14840 +0.3 2.1 DUF4835 domain-containing protein compare
CA265_RS24205 +0.3 1.8 hypothetical protein compare
CA265_RS19455 +0.3 2.1 hypothetical protein compare
CA265_RS20940 +0.3 2.0 hypothetical protein compare
CA265_RS18160 +0.3 1.9 short chain dehydrogenase compare
CA265_RS01835 +0.3 1.8 hypothetical protein compare
CA265_RS09725 +0.3 2.6 tolB protein precursor compare
CA265_RS24115 +0.3 1.5 hypothetical protein compare
CA265_RS08295 +0.3 0.9 hypothetical protein compare
CA265_RS19665 +0.3 0.7 cysteine methyltransferase compare
CA265_RS22530 +0.3 1.4 RDD family protein compare
CA265_RS21320 +0.3 1.0 hypothetical protein compare
CA265_RS20730 +0.3 1.3 hypothetical protein compare
CA265_RS21220 +0.3 1.5 hypothetical protein compare
CA265_RS00940 +0.3 1.2 hypothetical protein compare
CA265_RS17560 +0.3 2.0 peptidylprolyl isomerase compare
CA265_RS22155 +0.3 1.4 hypothetical protein compare
CA265_RS20075 +0.3 1.1 hypothetical protein compare
CA265_RS17595 +0.3 1.4 MarR family transcriptional regulator compare
CA265_RS08150 +0.3 1.3 peptidase compare
CA265_RS00415 +0.3 1.6 cupin compare
CA265_RS18855 +0.3 1.4 hypothetical protein compare
CA265_RS01790 +0.3 2.0 hypothetical protein compare
CA265_RS02800 +0.3 1.7 hypothetical protein compare
CA265_RS22310 +0.3 1.3 superoxide dismutase compare
CA265_RS21065 +0.3 0.7 hypothetical protein compare
CA265_RS17390 +0.3 1.7 PadR family transcriptional regulator compare
CA265_RS19910 +0.3 0.9 GDSL family lipase compare
CA265_RS21395 +0.3 0.9 hypothetical protein compare
CA265_RS08755 +0.3 1.6 response regulator compare
CA265_RS15445 +0.3 2.0 hypothetical protein compare
CA265_RS14325 +0.3 1.1 hypothetical protein compare
CA265_RS02315 +0.3 0.8 single-stranded DNA-binding protein compare
CA265_RS17220 +0.3 1.2 NAD(P)H-dependent oxidoreductase compare
CA265_RS25395 +0.3 1.2 cysteine hydrolase compare
CA265_RS23390 +0.3 1.0 alkyl hydroperoxide reductase compare
CA265_RS04780 +0.3 1.2 polyketide cyclase compare
CA265_RS24145 +0.3 1.6 hypothetical protein compare
CA265_RS14000 +0.3 1.1 DNA alkylation repair protein compare
CA265_RS24435 +0.3 1.8 hypothetical protein compare
CA265_RS14400 +0.3 1.7 DNA topoisomerase I compare
CA265_RS02555 +0.3 1.2 ATPase compare
CA265_RS06025 +0.3 0.9 hypothetical protein compare
CA265_RS10170 +0.3 1.4 hypothetical protein compare
CA265_RS14085 +0.3 1.8 hypothetical protein compare
CA265_RS18415 +0.3 1.6 hypothetical protein compare
CA265_RS22010 +0.3 0.8 hypothetical protein compare
CA265_RS04640 +0.3 1.5 efflux transporter periplasmic adaptor subunit compare
CA265_RS10430 +0.3 1.7 hypothetical protein compare
CA265_RS13200 +0.3 1.8 phosphatase PAP2 family protein compare
CA265_RS24955 +0.3 0.9 methyltransferase type 11 compare
CA265_RS03495 +0.3 0.7 cytochrome c biogenesis protein compare
CA265_RS25250 +0.3 1.8 hypothetical protein compare
CA265_RS10905 +0.3 1.4 iron-dependent repressor compare
CA265_RS20555 +0.3 1.1 galactose-1-epimerase compare
CA265_RS05370 +0.3 1.5 RNA polymerase subunit sigma-70 compare
CA265_RS03450 +0.3 1.3 hypothetical protein compare
CA265_RS17680 +0.3 1.1 hypothetical protein compare
CA265_RS21260 +0.3 1.8 hypothetical protein compare
CA265_RS18765 +0.3 1.7 hypothetical protein compare
CA265_RS25160 +0.3 1.2 glycosyl transferase family 2 compare
CA265_RS14600 +0.3 2.0 hypothetical protein compare
CA265_RS19805 +0.3 1.3 cyclic nucleotide-binding protein compare
CA265_RS20775 +0.3 1.1 hypothetical protein compare
CA265_RS25435 +0.3 0.8 hypothetical protein compare
CA265_RS21225 +0.3 1.7 hypothetical protein compare
CA265_RS22860 +0.3 0.9 hypothetical protein compare
CA265_RS03250 +0.3 1.3 DNA-binding response regulator compare
CA265_RS02265 +0.3 1.5 damage-inducible protein DinB compare
CA265_RS01165 +0.2 0.7 hypothetical protein compare
CA265_RS23485 +0.2 0.6 hypothetical protein compare
CA265_RS19800 +0.2 1.4 GLPGLI family protein compare
CA265_RS19545 +0.2 1.5 protease compare
CA265_RS08935 +0.2 1.3 (2Fe-2S)-binding protein compare
CA265_RS22125 +0.2 1.5 hypothetical protein compare
CA265_RS09915 +0.2 1.6 short-chain dehydrogenase/reductase compare
CA265_RS17735 +0.2 1.5 TIGR02453 family protein compare
CA265_RS19470 +0.2 1.6 noncanonical pyrimidine nucleotidase, YjjG family compare
CA265_RS02675 +0.2 1.0 hypothetical protein compare
CA265_RS16690 +0.2 1.7 oxidoreductase compare
CA265_RS23875 +0.2 1.1 hypothetical protein compare
CA265_RS23670 +0.2 1.4 cyclic nucleotide-binding protein compare
CA265_RS11050 +0.2 1.0 hypothetical protein compare
CA265_RS03015 +0.2 0.8 tRNA-specific adenosine deaminase compare
CA265_RS16455 +0.2 1.7 AraC family transcriptional regulator compare
CA265_RS25125 +0.2 1.8 hypothetical protein compare
CA265_RS07655 +0.2 1.3 hypothetical protein compare
CA265_RS17520 +0.2 1.5 hypothetical protein compare
CA265_RS17555 +0.2 1.9 hypothetical protein compare
CA265_RS10710 +0.2 1.5 hypothetical protein compare
CA265_RS20880 +0.2 1.3 hypothetical protein compare
CA265_RS12075 +0.2 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in r2a experiments