Experiment set1IT034 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS14365 -6.6 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -6.3 -4.4 anthranilate phosphoribosyltransferase compare
RR42_RS30655 -6.2 -6.1 LysR family transcriptional regulator compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS05860 -6.0 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS16255 -5.6 -8.5 sulfate adenylyltransferase compare
RR42_RS06485 -5.4 -7.4 chorismate synthase compare
RR42_RS19005 -5.1 -6.1 3-dehydroquinate synthase compare
RR42_RS16275 -5.1 -3.5 membrane protein compare
RR42_RS33255 -5.1 -3.3 protein-tyrosine phosphatase compare
RR42_RS18300 -5.0 -6.8 anthranilate synthase subunit II compare
RR42_RS33240 -4.9 -11.0 GDP-L-fucose synthase compare
RR42_RS01385 -4.9 -4.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS11795 -4.8 -3.4 PEP synthetase regulatory protein compare
RR42_RS18295 -4.8 -13.1 anthranilate synthase component I compare
RR42_RS33210 -4.8 -7.3 teichoic acid biosynthesis protein compare
RR42_RS14400 -4.8 -4.6 isopropylmalate isomerase compare
RR42_RS19010 -4.7 -8.5 shikimate kinase compare
RR42_RS33260 -4.7 -5.6 multidrug MFS transporter compare
RR42_RS16265 -4.7 -3.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14320 -4.5 -5.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS04475 -4.5 -11.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS15905 -4.5 -12.8 phosphoenolpyruvate carboxylase compare
RR42_RS14385 -4.4 -7.2 3-isopropylmalate dehydrogenase compare
RR42_RS04535 -4.4 -5.2 cysteine synthase compare
RR42_RS16250 -4.2 -7.7 sulfate adenylyltransferase compare
RR42_RS30660 -4.1 -8.9 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS05955 -4.1 -1.8 hypothetical protein compare
RR42_RS32740 -4.1 -1.8 enoyl-CoA hydratase compare
RR42_RS01845 -4.0 -2.5 glycerol-3-phosphate dehydrogenase compare
RR42_RS01160 -4.0 -7.9 homoserine O-acetyltransferase compare
RR42_RS16270 -3.9 -10.8 sulfite reductase compare
RR42_RS21220 -3.9 -2.5 iron transporter FeoB compare
RR42_RS18990 -3.8 -19.6 glutamate synthase compare
RR42_RS16245 -3.7 -6.6 uroporphyrin-III methyltransferase compare
RR42_RS33235 -3.7 -10.2 GDP-mannose 4,6-dehydratase compare
RR42_RS11790 -3.7 -9.7 phosphoenolpyruvate synthase compare
RR42_RS18855 -3.6 -4.3 preprotein translocase compare
RR42_RS17645 -3.5 -5.6 shikimate dehydrogenase compare
RR42_RS05990 -3.5 -9.3 aromatic amino acid aminotransferase compare
RR42_RS33250 -3.5 -7.5 tyrosine protein kinase compare
RR42_RS16280 -3.4 -6.7 transcriptional regulator compare
RR42_RS14360 -3.3 -2.0 tryptophan synthase subunit alpha compare
RR42_RS15890 -3.2 -9.4 heme biosynthesis protein HemY compare
RR42_RS20195 -3.1 -1.4 ATPase F0F1 compare
RR42_RS12040 -3.0 -10.6 MFS transporter compare
RR42_RS18985 -3.0 -7.0 glutamate synthase compare
RR42_RS16240 -3.0 -1.8 cobalamin biosynthesis protein CbiX compare
RR42_RS18820 -3.0 -7.9 cytochrome B compare
RR42_RS33575 -2.9 -4.3 hypothetical protein compare
RR42_RS17310 -2.9 -2.8 D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) (from data) compare
RR42_RS12550 -2.8 -4.9 hypothetical protein compare
RR42_RS07365 -2.8 -3.8 pyruvate dehydrogenase compare
RR42_RS18815 -2.8 -7.7 cytochrome C compare
RR42_RS19090 -2.7 -1.7 cytochrome C compare
RR42_RS07605 -2.7 -6.3 poly-beta-hydroxybutyrate polymerase compare
RR42_RS33245 -2.6 -6.5 mannose-1-phosphate guanyltransferase compare
RR42_RS20205 -2.6 -4.0 chromosome partitioning protein compare
RR42_RS01290 -2.6 -5.0 thiamine biosynthesis protein ThiC compare
RR42_RS04460 -2.6 -4.9 chorismate mutase compare
RR42_RS33355 -2.6 -5.8 membrane protein compare
RR42_RS15895 -2.4 -6.4 uroporphyrinogen III methyltransferase compare
RR42_RS16260 -2.4 -1.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS08110 -2.4 -2.8 hypothetical protein compare
RR42_RS02705 -2.4 -2.7 Holliday junction DNA helicase RuvA compare
RR42_RS29865 -2.3 -3.7 hypothetical protein compare
RR42_RS06095 -2.2 -4.6 hypothetical protein compare
RR42_RS18850 -2.2 -2.4 preprotein translocase subunit TatC compare
RR42_RS12925 -2.2 -3.1 ATPase compare
RR42_RS24605 -2.2 -10.2 TetR family transcriptional regulator compare
RR42_RS09375 -2.1 -1.6 taurine dioxygenase compare
RR42_RS01920 -2.1 -3.6 protoheme IX farnesyltransferase compare
RR42_RS05500 -2.1 -1.7 preprotein translocase subunit SecG compare
RR42_RS01885 -2.0 -5.6 cytochrome C oxidase assembly protein compare
RR42_RS18940 -2.0 -4.5 ABC transporter ATP-binding protein compare
RR42_RS15410 -2.0 -3.8 membrane protein compare
RR42_RS07555 -2.0 -2.1 potassium transporter Kup compare
RR42_RS13935 -1.9 -2.9 hemin transporter compare
RR42_RS17290 -1.9 -6.4 LysR family transcriptional regulator compare
RR42_RS19045 -1.9 -1.4 frataxin compare
RR42_RS04470 -1.8 -4.0 prephenate dehydrogenase compare
RR42_RS02810 -1.8 -1.9 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS01910 -1.8 -4.9 cytochrome C oxidase subunit I compare
RR42_RS03080 -1.8 -3.9 recombinase RecA compare
RR42_RS01905 -1.7 -3.0 cytochrome C oxidase subunit II compare
RR42_RS18430 -1.7 -3.0 prevent-host-death protein compare
RR42_RS18725 -1.7 -2.1 hypothetical protein compare
RR42_RS03070 -1.6 -9.7 histidine kinase conserved
RR42_RS00360 -1.6 -2.6 Asp/Glu/hydantoin racemase compare
RR42_RS01880 -1.6 -5.4 cytochrome oxidase subunit I compare
RR42_RS30640 -1.5 -4.5 DNA mismatch repair protein MutT compare
RR42_RS26935 -1.5 -4.6 farnesyl-diphosphate farnesyltransferase compare
RR42_RS03075 -1.5 -7.9 transcriptional regulator compare
RR42_RS13800 -1.5 -4.7 formyltetrahydrofolate deformylase compare
RR42_RS19485 -1.5 -1.4 general secretion pathway protein GspH compare
RR42_RS14790 -1.5 -7.7 cobalamin biosynthesis protein CobD compare
RR42_RS18825 -1.5 -1.4 ubiquinol-cytochrome C reductase compare
RR42_RS07565 -1.5 -6.5 transcription accessory protein compare
RR42_RS17300 -1.5 -6.0 D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) (from data) conserved
RR42_RS19695 -1.5 -2.4 cytochrome C protein compare
RR42_RS13190 -1.4 -4.8 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS08945 -1.4 -1.4 hypothetical protein compare
RR42_RS17105 -1.4 -7.5 Clp protease ClpX compare
RR42_RS17390 -1.4 -5.4 ATP-dependent DNA helicase RecG compare
RR42_RS15035 -1.4 -4.4 ZIP zinc transporter compare
RR42_RS01895 -1.4 -4.8 MFS transporter compare
RR42_RS08575 -1.4 -1.2 tail protein compare
RR42_RS12050 -1.3 -6.7 DNA polymerase compare
RR42_RS03060 -1.3 -7.3 MFS transporter conserved
RR42_RS00655 -1.3 -3.1 membrane protein compare
RR42_RS08330 -1.3 -1.5 hypothetical protein compare
RR42_RS17315 -1.3 -4.3 D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) (from data) compare
RR42_RS33215 -1.3 -7.9 transferase compare
RR42_RS01775 -1.3 -5.2 glutamate--cysteine ligase compare
RR42_RS12015 -1.3 -2.5 dihydrolipoamide acyltransferase compare
RR42_RS19895 -1.3 -1.9 elongation factor GreAB compare
RR42_RS05165 -1.3 -2.2 GntR family transcriptional regulator compare
RR42_RS03630 -1.3 -1.3 cold-shock protein compare
RR42_RS01505 -1.3 -1.6 tRNA-Cys compare
RR42_RS21150 -1.2 -2.3 hypothetical protein compare
RR42_RS09060 -1.2 -1.9 glucose-6-phosphate isomerase compare
RR42_RS37240 -1.2 -1.4 hypothetical protein compare
RR42_RS19410 -1.2 -5.2 GntR family transcriptional regulator compare
RR42_RS01875 -1.2 -3.8 cytochrome C oxidase subunit II compare
RR42_RS31290 -1.2 -2.4 XRE family transcriptional regulator compare
RR42_RS17620 -1.2 -4.0 phosphatidylglycerophosphatase compare
RR42_RS14055 -1.2 -2.1 elongation factor 4 compare
RR42_RS02860 -1.2 -1.8 hypothetical protein compare
RR42_RS05920 -1.2 -3.9 HrcA family transcriptional regulator compare
RR42_RS09015 -1.2 -2.8 trigger factor compare
RR42_RS18930 -1.2 -3.3 BolA family transcriptional regulator compare
RR42_RS26535 -1.2 -3.2 diguanylate cyclase compare
RR42_RS05610 -1.2 -2.8 dehydratase compare
RR42_RS01915 -1.2 -2.9 cytochrome C oxidase subunit I compare
RR42_RS23955 -1.2 -2.7 hypothetical protein compare
RR42_RS15415 -1.2 -2.0 membrane protein compare
RR42_RS11550 -1.2 -2.0 3-oxoacyl-ACP reductase compare
RR42_RS35875 -1.2 -6.1 UDP-galactose-4-epimerase compare
RR42_RS30195 -1.1 -2.9 MarR family transcriptional regulator compare
RR42_RS21665 -1.1 -4.4 cobalt transporter compare
RR42_RS32600 -1.1 -3.3 cytochrome O ubiquinol oxidase subunit II compare
RR42_RS36450 -1.1 -1.1 acyl dehydratase compare
RR42_RS23140 -1.1 -1.3 peptidylprolyl isomerase compare
RR42_RS14735 -1.1 -2.3 membrane protein compare
RR42_RS31530 -1.1 -2.5 histidine kinase compare
RR42_RS05755 -1.1 -1.9 enoyl-CoA hydratase compare
RR42_RS20285 -1.1 -2.3 amino acid ABC transporter ATP-binding protein compare
RR42_RS15090 -1.1 -3.9 DNA helicase compare
RR42_RS21000 -1.1 -2.5 glycosyl transferase compare
RR42_RS26900 -1.1 -1.7 enoyl-CoA hydratase compare
RR42_RS35140 -1.1 -2.3 2-hydroxylaminobenzoate mutase compare
RR42_RS01260 -1.1 -5.3 lauroyl acyltransferase compare
RR42_RS36550 -1.0 -2.1 3-hydroxyacyl-CoA dehydrogenase compare
RR42_RS17555 -1.0 -1.2 hypothetical protein compare
RR42_RS17685 -1.0 -4.0 alkyl hydroperoxide reductase compare
RR42_RS26905 -1.0 -3.9 methylcrotonoyl-CoA carboxylase compare
RR42_RS25785 -1.0 -1.4 TetR family transcriptional regulator compare
RR42_RS29280 -1.0 -1.1 hypothetical protein compare
RR42_RS19860 -1.0 -1.0 tartronate semialdehyde reductase compare
RR42_RS23205 -1.0 -1.0 hypothetical protein compare
RR42_RS24550 -1.0 -1.7 hypothetical protein compare
RR42_RS15475 -1.0 -4.3 protein tolQ compare
RR42_RS17060 -1.0 -7.3 histidine kinase compare
RR42_RS15525 -1.0 -1.1 hypothetical protein compare
RR42_RS17560 -1.0 -2.7 Fur family transcriptional regulator compare
RR42_RS19685 -1.0 -2.0 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS07380 -1.0 -2.2 dihydrolipoamide dehydrogenase compare
RR42_RS22890 -1.0 -4.1 TetR family transcriptional regulator compare
RR42_RS15455 -1.0 -3.7 membrane protein compare
RR42_RS21435 -1.0 -2.2 hypothetical protein compare
RR42_RS18995 -1.0 -4.2 transposase compare
RR42_RS13875 -1.0 -7.1 sodium:solute symporter compare
RR42_RS01720 -1.0 -2.1 membrane protein compare
RR42_RS35895 -1.0 -2.9 PadR family transcriptional regulator compare
RR42_RS18670 -1.0 -3.9 metal-dependent hydrolase compare
RR42_RS24010 -1.0 -1.5 hypothetical protein compare
RR42_RS17305 -1.0 -4.5 ion transporter compare
RR42_RS28290 -1.0 -2.3 DNA-binding protein compare
RR42_RS28885 -1.0 -3.7 membrane protein compare
RR42_RS19445 -1.0 -4.6 TetR family transcriptional regulator compare
RR42_RS07360 -1.0 -2.0 ATPase compare
RR42_RS24690 -0.9 -1.1 hypothetical protein compare
RR42_RS13730 -0.9 -1.7 TetR family transcriptional regulator compare
RR42_RS31900 -0.9 -2.0 short-chain dehydrogenase compare
RR42_RS08725 -0.9 -2.2 ketosteroid isomerase compare
RR42_RS13620 -0.9 -0.9 ferredoxin compare
RR42_RS13910 -0.9 -5.0 glutamate racemase compare
RR42_RS22590 -0.9 -0.8 organic hydroperoxide resistance protein compare
RR42_RS17050 -0.9 -3.9 phosphoribosylglycinamide formyltransferase compare
RR42_RS16580 -0.9 -2.5 hypothetical protein compare
RR42_RS15710 -0.9 -3.8 LPS biosynthesis protein compare
RR42_RS15985 -0.9 -2.4 formate dehydrogenase compare
RR42_RS07620 -0.9 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS27120 -0.9 -1.3 amino acid ABC transporter permease compare
RR42_RS03925 -0.9 -2.1 hypothetical protein compare
RR42_RS17490 -0.9 -3.5 NADP transhydrogenase subunit alpha compare
RR42_RS24040 -0.9 -3.1 hypothetical protein compare
RR42_RS11080 -0.9 -2.9 phenylacetic acid degradation protein compare
RR42_RS00460 -0.9 -4.0 septum formation inhibitor compare
RR42_RS13685 -0.9 -1.6 cupin compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium D-Lactate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium D-Lactate across organisms