Experiment set1IT034 for Cupriavidus basilensis FW507-4G11

Compare to:

Sodium D-Lactate carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS20775 +1.8 2.5 hypothetical protein compare
RR42_RS17805 +1.6 2.1 hypothetical protein compare
RR42_RS01630 +1.4 1.6 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS22030 +1.3 4.1 hypothetical protein compare
RR42_RS07155 +1.3 2.6 hypothetical protein compare
RR42_RS20810 +1.2 2.2 hypothetical protein compare
RR42_RS36570 +1.1 1.9 prevent-host-death protein compare
RR42_RS24930 +1.1 1.6 AraC family transcriptional regulator compare
RR42_RS26295 +1.0 6.0 GntR family transcriptional regulator compare
RR42_RS03875 +1.0 2.9 nucleoside 2-deoxyribosyltransferase compare
RR42_RS13865 +1.0 1.8 hypothetical protein compare
RR42_RS04205 +1.0 2.2 glycine cleavage system regulatory protein compare
RR42_RS18730 +1.0 2.2 hypothetical protein compare
RR42_RS32670 +0.9 1.4 phenol hydroxylase compare
RR42_RS08210 +0.9 1.4 hypothetical protein compare
RR42_RS05945 +0.9 2.0 thioredoxin compare
RR42_RS08185 +0.9 2.3 hypothetical protein compare
RR42_RS32035 +0.9 2.6 short-chain dehydrogenase compare
RR42_RS06710 +0.9 1.9 hypothetical protein compare
RR42_RS28720 +0.9 1.7 hypothetical protein compare
RR42_RS16310 +0.9 2.1 hypothetical protein compare
RR42_RS21790 +0.9 2.3 short-chain dehydrogenase compare
RR42_RS06925 +0.8 1.6 hypothetical protein compare
RR42_RS04810 +0.8 1.9 glycine/betaine ABC transporter permease compare
RR42_RS08220 +0.8 1.3 hypothetical protein compare
RR42_RS25160 +0.8 3.4 hypothetical protein compare
RR42_RS09085 +0.8 1.2 C4-dicarboxylate ABC transporter permease compare
RR42_RS00490 +0.8 2.8 potassium-transporting ATPase subunit C compare
RR42_RS01450 +0.8 2.2 hypothetical protein compare
RR42_RS16640 +0.8 1.2 LysR family transcriptional regulator compare
RR42_RS23995 +0.8 1.6 hypothetical protein compare
RR42_RS31735 +0.8 1.5 ABC transporter ATP-binding protein compare
RR42_RS07125 +0.8 1.1 hypothetical protein compare
RR42_RS01705 +0.7 1.0 Fis family transcriptional regulator compare
RR42_RS34675 +0.7 1.5 NADPH:quinone reductase compare
RR42_RS16910 +0.7 1.1 histidine utilization protein HutD compare
RR42_RS05965 +0.7 1.5 malonic semialdehyde reductase compare
RR42_RS02210 +0.7 1.0 succinate dehydrogenase compare
RR42_RS22940 +0.7 2.0 TetR family transcriptional regulator compare
RR42_RS03920 +0.7 1.9 rubredoxin compare
RR42_RS08425 +0.7 1.3 hypothetical protein compare
RR42_RS12390 +0.7 2.7 transporter compare
RR42_RS24790 +0.7 1.0 LysR family transcriptional regulator compare
RR42_RS02085 +0.7 3.5 RNA polymerase subunit sigma-54 compare
RR42_RS04125 +0.7 2.8 lipoprotein compare
RR42_RS07240 +0.7 1.6 hypothetical protein compare
RR42_RS06395 +0.7 4.4 TetR family transcriptional regulator compare
RR42_RS32875 +0.7 2.2 hypothetical protein compare
RR42_RS30285 +0.7 1.8 amidohydrolase compare
RR42_RS21040 +0.7 1.0 hypothetical protein compare
RR42_RS23220 +0.7 1.8 MarR family transcriptional regulator compare
RR42_RS33405 +0.7 2.7 hypothetical protein compare
RR42_RS13500 +0.7 1.9 membrane protein compare
RR42_RS12155 +0.6 1.5 molecular chaperone compare
RR42_RS05225 +0.6 2.6 MFS transporter compare
RR42_RS30105 +0.6 3.1 taurine dioxygenase compare
RR42_RS09240 +0.6 0.7 MFS transporter compare
RR42_RS14700 +0.6 2.2 hypothetical protein compare
RR42_RS27480 +0.6 1.9 AraC family transcriptional regulator compare
RR42_RS10855 +0.6 0.8 diguanylate phosphodiesterase compare
RR42_RS28005 +0.6 1.2 phosphonate/organophosphate ester transporter subunit compare
RR42_RS05895 +0.6 1.2 rhombosortase compare
RR42_RS03085 +0.6 0.9 RecX family transcriptional regulator compare
RR42_RS11270 +0.6 4.8 aconitate hydratase compare
RR42_RS15060 +0.6 2.0 membrane protein compare
RR42_RS02555 +0.6 2.1 transcriptional regulator compare
RR42_RS02545 +0.6 1.2 nitrate ABC transporter ATP-binding protein compare
RR42_RS15135 +0.6 2.3 LysR family transcriptional regulator compare
RR42_RS13830 +0.6 0.8 hypothetical protein compare
RR42_RS12680 +0.6 2.4 hypothetical protein compare
RR42_RS26265 +0.6 0.8 hypothetical protein compare
RR42_RS16545 +0.6 2.2 prolyl-tRNA synthetase compare
RR42_RS20005 +0.6 1.6 hypothetical protein compare
RR42_RS12375 +0.6 1.4 LysR family transcriptional regulator compare
RR42_RS06965 +0.6 1.2 hypothetical protein compare
RR42_RS11275 +0.6 2.8 3-methylitaconate isomerase compare
RR42_RS21365 +0.6 2.1 ABC transporter ATP-binding protein compare
RR42_RS26370 +0.6 1.2 tautomerase compare
RR42_RS10585 +0.6 2.6 TetR family transcriptional regulator compare
RR42_RS31935 +0.6 2.2 enoyl-CoA hydratase compare
RR42_RS37400 +0.6 0.8 6-phosphogluconolactonase compare
RR42_RS37425 +0.6 2.5 hypothetical protein compare
RR42_RS18310 +0.6 0.6 indole-3-glycerol-phosphate synthase compare
RR42_RS09635 +0.6 1.3 membrane protein compare
RR42_RS33440 +0.6 2.2 LysR family transcriptional regulator compare
RR42_RS31240 +0.6 1.9 AMP-dependent synthetase compare
RR42_RS27370 +0.6 2.6 zinc finger UBP-type protein compare
RR42_RS06020 +0.6 0.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS34965 +0.6 2.5 dioxygenase compare
RR42_RS17595 +0.6 0.9 hypothetical protein compare
RR42_RS23845 +0.6 0.8 hypothetical protein compare
RR42_RS20575 +0.6 1.0 hypothetical protein compare
RR42_RS16175 +0.6 1.2 enoyl-CoA hydratase compare
RR42_RS21755 +0.6 1.1 shikimate dehydrogenase compare
RR42_RS04955 +0.6 1.5 hypothetical protein compare
RR42_RS00525 +0.6 1.7 MarR family transcriptional regulator compare
RR42_RS36690 +0.6 1.9 DNA alkylation repair protein compare
RR42_RS29545 +0.6 2.1 mannosyltransferase compare
RR42_RS13255 +0.6 3.1 hydroxymethylglutaryl-CoA lyase compare
RR42_RS06880 +0.6 0.9 hypothetical protein compare
RR42_RS12080 +0.6 2.0 lipase compare
RR42_RS34710 +0.6 2.3 chemotaxis protein CheY compare
RR42_RS29520 +0.5 2.5 acyl-CoA hydrolase compare
RR42_RS19785 +0.5 2.4 allantoate amidohydrolase compare
RR42_RS17665 +0.5 1.3 chorismate lyase compare
RR42_RS23760 +0.5 1.0 tRNA-Asn compare
RR42_RS17635 +0.5 1.3 magnesium transporter CorA compare
RR42_RS35450 +0.5 1.3 hypothetical protein compare
RR42_RS28920 +0.5 1.0 hypothetical protein compare
RR42_RS05750 +0.5 0.9 fructose 2,6-bisphosphatase compare
RR42_RS35740 +0.5 1.3 flagellar biosynthesis protein FlgN compare
RR42_RS34525 +0.5 1.9 type VI secretion protein VasK compare
RR42_RS26885 +0.5 1.6 peptidase M20 compare
RR42_RS03680 +0.5 2.5 hypothetical protein compare
RR42_RS35900 +0.5 3.1 hypothetical protein compare
RR42_RS34185 +0.5 1.4 hypothetical protein compare
RR42_RS28080 +0.5 1.5 GntR family transcriptional regulator compare
RR42_RS33385 +0.5 3.4 XpsR family transcriptional regulator compare
RR42_RS33485 +0.5 1.0 Fe-S oxidoreductase compare
RR42_RS30405 +0.5 2.3 GntR family transcriptional regulator compare
RR42_RS12860 +0.5 1.3 pseudouridine synthase compare
RR42_RS00345 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS32325 +0.5 1.8 magnesium chelatase compare
RR42_RS24575 +0.5 1.3 endoribonuclease L-PSP compare
RR42_RS17165 +0.5 1.7 hypothetical protein compare
RR42_RS22640 +0.5 2.2 CAAX amino protease compare
RR42_RS26130 +0.5 1.2 C4-dicarboxylate ABC transporter compare
RR42_RS11260 +0.5 2.8 Methylisocitrate lyase (EC 4.1.3.30) (from data) compare
RR42_RS37115 +0.5 1.2 hypothetical protein compare
RR42_RS19260 +0.5 2.1 nitrilotriacetate monooxygenase compare
RR42_RS05280 +0.5 3.2 cytochrome C compare
RR42_RS28745 +0.5 1.4 hypothetical protein compare
RR42_RS30435 +0.5 1.7 twin-arginine translocation pathway signal protein compare
RR42_RS02030 +0.5 1.3 membrane protein compare
RR42_RS16120 +0.5 2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
RR42_RS37410 +0.5 2.0 PaaX family transcriptional regulator compare
RR42_RS06735 +0.5 0.9 hypothetical protein compare
RR42_RS31020 +0.5 1.2 hypothetical protein compare
RR42_RS20370 +0.5 0.6 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS21710 +0.5 2.6 haloacid dehalogenase compare
RR42_RS37135 +0.5 1.5 cold-shock protein compare
RR42_RS07440 +0.5 0.9 hypothetical protein compare
RR42_RS30570 +0.5 1.7 hypothetical protein compare
RR42_RS27280 +0.5 1.5 hypothetical protein compare
RR42_RS28800 +0.5 3.7 isocitrate dehydrogenase compare
RR42_RS13805 +0.5 2.2 NTP pyrophosphohydrolase compare
RR42_RS06850 +0.5 1.9 hypothetical protein compare
RR42_RS29610 +0.5 0.7 cytochrome C2 compare
RR42_RS11840 +0.5 2.1 zinc metalloprotease compare
RR42_RS03910 +0.5 1.2 (2Fe-2S)-binding protein compare
RR42_RS24880 +0.5 2.0 hypothetical protein compare
RR42_RS36330 +0.5 1.1 nitronate monooxygenase compare
RR42_RS19525 +0.5 1.8 general secretion pathway protein GspE compare
RR42_RS05425 +0.5 2.6 membrane protein compare
RR42_RS28515 +0.5 1.9 LysR family transcriptional regulator compare
RR42_RS09565 +0.5 1.7 hypothetical protein compare
RR42_RS28750 +0.5 2.1 ABC transporter substrate-binding protein compare
RR42_RS16925 +0.5 2.4 histidine utilization repressor compare
RR42_RS23040 +0.5 1.6 hypothetical protein compare
RR42_RS26970 +0.5 2.4 hypothetical protein compare
RR42_RS08720 +0.5 2.4 alpha/beta hydrolase compare
RR42_RS20360 +0.5 0.9 AsnC family transcriptional regulator compare
RR42_RS30450 +0.5 1.8 cation:proton antiporter compare
RR42_RS10980 +0.5 2.1 hydroxypyruvate isomerase compare
RR42_RS13640 +0.5 0.6 MarR family transcriptional regulator compare
RR42_RS13635 +0.5 2.7 ABC transporter substrate-binding protein compare
RR42_RS24535 +0.5 0.9 tRNA-Asn compare
RR42_RS33070 +0.5 1.4 oxidoreductase compare
RR42_RS16520 +0.5 2.4 RNA polymerase sigma factor compare
RR42_RS12335 +0.5 1.9 twin-arginine translocation pathway signal protein compare
RR42_RS35630 +0.5 2.1 ArsR family transcriptional regulator compare
RR42_RS11090 +0.5 1.9 nicotinamidase compare
RR42_RS18715 +0.5 2.3 phage capsid protein compare
RR42_RS35975 +0.5 0.8 pilus assembly protein TadC compare
RR42_RS10565 +0.5 1.7 alpha/beta hydrolase compare
RR42_RS35240 +0.5 0.9 acyl-CoA dehydrogenase compare
RR42_RS36300 +0.5 2.4 IclR family transcriptional regulator compare
RR42_RS17130 +0.5 2.4 hypothetical protein compare
RR42_RS29525 +0.5 1.0 hypothetical protein compare
RR42_RS06325 +0.5 0.8 serine O-acetyltransferase compare
RR42_RS25660 +0.5 1.9 cytochrome C biogenesis protein compare
RR42_RS27035 +0.5 1.0 hypothetical protein compare
RR42_RS33505 +0.5 1.9 AsnC family transcriptional regulator compare
RR42_RS09145 +0.5 1.8 hypothetical protein compare
RR42_RS36345 +0.5 2.5 hydroxyproline-2-epimerase compare
RR42_RS31550 +0.5 1.8 RND transporter compare
RR42_RS23120 +0.5 1.4 hypothetical protein compare
RR42_RS27655 +0.5 1.3 hypothetical protein compare
RR42_RS10940 +0.5 1.9 hypothetical protein compare
RR42_RS28490 +0.5 1.4 hypothetical protein compare
RR42_RS15145 +0.5 1.3 membrane protein compare
RR42_RS21850 +0.5 1.2 3-oxoadipate enol-lactonase compare
RR42_RS15640 +0.5 0.6 hypothetical protein compare
RR42_RS11680 +0.5 1.2 hypothetical protein compare
RR42_RS27825 +0.5 1.9 4-hydroxyphenylacetate isomerase compare
RR42_RS24270 +0.5 2.0 hypothetical protein compare
RR42_RS05780 +0.5 1.1 hypothetical protein compare
RR42_RS31600 +0.5 1.5 hypothetical protein compare
RR42_RS10440 +0.5 0.8 heat-shock protein compare
RR42_RS19735 +0.5 1.6 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium D-Lactate in Cupriavidus basilensis FW507-4G11

For carbon source Sodium D-Lactate across organisms