Experiment set1IT033 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Mannose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3842 -5.9 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4825 -5.6 -6.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_77 -5.6 -3.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -5.4 -9.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -5.2 -9.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5006 -5.2 -9.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_64 -5.0 -4.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_71 -5.0 -5.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3751 -4.7 -14.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -4.7 -7.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5175 -4.6 -14.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3253 -4.5 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4826 -4.5 -7.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5176 -4.5 -10.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2894 -4.4 -6.0 N-acylglucosamine 2-epimerase (EC 5.1.3.8) conserved
Pf6N2E2_3782 -4.4 -5.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3839 -4.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5177 -4.3 -11.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4047 -4.0 -5.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_4564 -3.8 -10.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3252 -3.8 -9.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3752 -3.6 -19.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_66 -3.6 -9.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4206 -3.5 -3.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3610 -3.5 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3630 -3.5 -6.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3661 -3.2 -4.9 hypothetical protein compare
Pf6N2E2_4372 -3.2 -5.3 FIG00460773: hypothetical protein compare
Pf6N2E2_3783 -3.2 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4279 -3.1 -12.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_2217 -3.1 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4638 -3.0 -3.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3841 -3.0 -6.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_302 -3.0 -6.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_2073 -2.9 -8.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4278 -2.8 -10.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5527 -2.8 -3.2 Cold shock protein CspC compare
Pf6N2E2_4752 -2.7 -11.9 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_3060 -2.7 -3.5 Outer membrane protein H precursor compare
Pf6N2E2_3932 -2.7 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2440 -2.7 -1.7 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_63 -2.6 -5.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_2753 -2.6 -4.3 HtrA protease/chaperone protein compare
Pf6N2E2_3248 -2.6 -3.1 Probable transmembrane protein compare
Pf6N2E2_5579 -2.5 -7.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_1381 -2.4 -8.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1705 -2.4 -2.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5103 -2.4 -2.1 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5156 -2.3 -3.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2574 -2.3 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_5780 -2.3 -9.7 Periplasmic protease compare
Pf6N2E2_5150 -2.3 -6.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4759 -2.2 -11.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2885 -2.2 -6.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4417 -2.2 -4.3 Protein of unknown function DUF484 compare
Pf6N2E2_3984 -2.1 -8.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3170 -2.1 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_3885 -2.1 -2.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4009 -2.0 -9.0 GGDEF domain protein compare
Pf6N2E2_4204 -2.0 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3940 -2.0 -7.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4611 -1.9 -3.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4277 -1.9 -7.9 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5316 -1.9 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4803 -1.8 -1.7 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1402 -1.7 -4.7 hypothetical protein compare
Pf6N2E2_133 -1.7 -2.1 hypothetical protein compare
Pf6N2E2_5894 -1.7 -6.1 Putative threonine efflux protein compare
Pf6N2E2_5571 -1.7 -2.4 hypothetical protein compare
Pf6N2E2_2892 -1.7 -8.4 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf6N2E2_5816 -1.7 -2.2 Smr domain protein compare
Pf6N2E2_5899 -1.7 -5.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4418 -1.6 -1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2514 -1.6 -4.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3271 -1.6 -3.2 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3942 -1.6 -7.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2156 -1.6 -3.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_4052 -1.5 -1.8 FIG00955481: hypothetical protein compare
Pf6N2E2_5728 -1.5 -3.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_2919 -1.5 -2.7 FIG00955830: hypothetical protein compare
Pf6N2E2_2218 -1.5 -4.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3062 -1.5 -4.6 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5160 -1.5 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_50 -1.5 -6.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_482 -1.4 -2.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_2465 -1.4 -3.6 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4077 -1.4 -2.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_546 -1.4 -2.4 FIG00966904: hypothetical protein compare
Pf6N2E2_2756 -1.4 -5.2 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_623 -1.4 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_658 -1.4 -7.8 sensor histidine kinase compare
Pf6N2E2_2895 -1.4 -6.6 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_5219 -1.4 -5.6 FIG140336: TPR domain protein compare
Pf6N2E2_3835 -1.3 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1339 -1.3 -2.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_248 -1.3 -6.2 hypothetical protein compare
Pf6N2E2_1400 -1.3 -7.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3941 -1.3 -2.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3260 -1.2 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3461 -1.2 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2507 -1.2 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3349 -1.2 -2.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5001 -1.2 -2.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_704 -1.2 -3.6 Cytochrome c551/c552 compare
Pf6N2E2_4764 -1.2 -3.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2074 -1.2 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5252 -1.2 -1.9 FIG00956396: hypothetical protein compare
Pf6N2E2_3320 -1.2 -3.4 hypothetical protein compare
Pf6N2E2_1691 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_3198 -1.2 -1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3326 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_2367 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_4362 -1.2 -2.7 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4545 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_5536 -1.1 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2501 -1.1 -2.7 hypothetical protein compare
Pf6N2E2_4205 -1.1 -3.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_3557 -1.1 -2.1 Chaperone-modulator protein CbpM compare
Pf6N2E2_146 -1.1 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_237 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_99 -1.1 -2.7 hypothetical protein compare
Pf6N2E2_2896 -1.0 -3.4 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
Pf6N2E2_3561 -1.0 -2.8 Phosphate starvation-inducible protein psiF precursor compare
Pf6N2E2_2357 -1.0 -3.1 Invasion protein iagA compare
Pf6N2E2_2889 -1.0 -5.1 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf6N2E2_1606 -1.0 -4.5 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5243 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_5049 -1.0 -1.4 acetyltransferase, GNAT family compare
Pf6N2E2_2292 -1.0 -2.8 Universal stress protein family COG0589 compare
Pf6N2E2_5339 -1.0 -4.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_384 -1.0 -2.6 Glycine cleavage system transcriptional activator compare
Pf6N2E2_5312 -1.0 -1.6 FIG00964214: hypothetical protein compare
Pf6N2E2_3017 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_2373 -1.0 -2.6 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_3258 -1.0 -3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2588 -1.0 -2.4 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2200 -1.0 -1.6 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_1784 -1.0 -2.4 Methyl-accepting chemotaxis protein compare
Pf6N2E2_2181 -1.0 -1.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2261 -0.9 -4.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_425 -0.9 -2.0 FIG00957304: hypothetical protein compare
Pf6N2E2_5555 -0.9 -1.2 Cold shock protein CspA compare
Pf6N2E2_613 -0.9 -1.4 lipoprotein, putative compare
Pf6N2E2_3219 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_1783 -0.9 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5902 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4367 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_1932 -0.9 -3.3 Transcriptional regulator, IclR family compare
Pf6N2E2_4761 -0.9 -4.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_1401 -0.9 -3.9 FIG00955631: hypothetical protein compare
Pf6N2E2_3539 -0.9 -2.3 FIG00955840: hypothetical protein compare
Pf6N2E2_5052 -0.9 -1.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_5086 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_2891 -0.9 -5.3 Glucose ABC transport system, inner membrane component 1 compare
Pf6N2E2_5723 -0.9 -5.9 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4025 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_4416 -0.9 -1.4 Tyrosine recombinase XerC compare
Pf6N2E2_2034 -0.9 -2.3 Methyltransferase compare
Pf6N2E2_5966 -0.9 -4.3 L-arabinolactonase (EC 3.1.1.15) (from data) compare
Pf6N2E2_5943 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_2682 -0.9 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_2510 -0.9 -2.4 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3206 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2893 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_5988 -0.9 -3.4 hypothetical protein compare
Pf6N2E2_4579 -0.9 -1.0 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1870 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_5337 -0.9 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_1404 -0.9 -2.1 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_2693 -0.9 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1718 -0.9 -2.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_2223 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_1522 -0.8 -1.9 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4352 -0.8 -1.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5613 -0.8 -1.4 FIG00953674: hypothetical protein compare
Pf6N2E2_5255 -0.8 -4.4 Outer membrane stress sensor protease DegS compare
Pf6N2E2_1749 -0.8 -1.6 Cyn operon transcriptional activator compare
Pf6N2E2_3199 -0.8 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_649 -0.8 -1.3 General secretion pathway protein L compare
Pf6N2E2_2013 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5976 -0.8 -2.6 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf6N2E2_2139 -0.8 -2.5 Paraquat-inducible protein A compare
Pf6N2E2_4537 -0.8 -1.7 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_804 -0.8 -3.2 Fructokinase (EC 2.7.1.4) compare
Pf6N2E2_5338 -0.8 -4.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5144 -0.8 -2.7 Osmotically inducible protein OsmY compare
Pf6N2E2_4601 -0.8 -1.6 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_4743 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_1317 -0.8 -2.5 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_2794 -0.8 -1.3 putative membrane protein compare
Pf6N2E2_338 -0.8 -1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_4928 -0.8 -1.4 Permeases of the major facilitator superfamily compare
Pf6N2E2_5524 -0.8 -5.4 Outer membrane porin, OprD family compare
Pf6N2E2_4817 -0.8 -6.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf6N2E2_3659 -0.8 -3.0 Protein fixF compare
Pf6N2E2_805 -0.8 -3.9 Xylulose kinase (EC 2.7.1.17) (from data) compare
Pf6N2E2_778 -0.8 -2.2 Probable lipoprotein signal peptide compare
Pf6N2E2_5622 -0.7 -2.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_922 -0.7 -1.3 FIG00794167: hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Mannose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Mannose across organisms