Experiment set1IT033 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21440 -5.4 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -4.9 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_07565 -4.9 -4.8 lactate utilization protein B/C conserved
AO356_12525 -4.9 -6.7 acetylglutamate kinase compare
AO356_13405 -4.8 -8.0 methionine biosynthesis protein MetW compare
AO356_21405 -4.7 -4.6 3-isopropylmalate dehydratase compare
AO356_15265 -4.6 -7.7 murein hydrolase transporter LrgA conserved
AO356_06970 -4.5 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21415 -4.4 -10.6 3-isopropylmalate dehydrogenase compare
AO356_21400 -4.4 -7.2 isopropylmalate isomerase compare
AO356_07560 -4.4 -12.2 (Fe-S)-binding protein conserved
AO356_07570 -4.3 -15.0 4Fe-4S ferredoxin conserved
AO356_10915 -4.3 -10.2 tryptophan synthase subunit beta compare
AO356_12020 -4.2 -10.9 pyruvate carboxylase subunit A compare
AO356_03535 -4.2 -8.0 BolA family transcriptional regulator conserved
AO356_15270 -4.2 -7.0 hypothetical protein conserved
AO356_13250 -4.2 -8.4 dihydroxy-acid dehydratase compare
AO356_13410 -4.2 -11.0 homoserine O-acetyltransferase compare
AO356_06965 -4.1 -7.4 histidinol dehydrogenase compare
AO356_08735 -4.1 -12.4 phosphoserine phosphatase compare
AO356_06615 -4.0 -2.2 FeS assembly protein IscX compare
AO356_18325 -3.9 -10.7 argininosuccinate synthase compare
AO356_14435 -3.9 -7.9 anthranilate phosphoribosyltransferase compare
AO356_13085 -3.9 -9.4 N-acetylglutamate synthase compare
AO356_09375 -3.9 -20.6 glutamate synthase compare
AO356_11495 -3.9 -8.2 hypothetical protein compare
AO356_09370 -3.9 -12.2 glutamate synthase compare
AO356_09800 -3.9 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_00880 -3.8 -3.7 integration host factor subunit alpha compare
AO356_12025 -3.8 -14.9 pyruvate carboxylase subunit B compare
AO356_00560 -3.8 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09525 -3.8 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14420 -3.8 -14.1 anthranilate synthase compare
AO356_19045 -3.8 -12.7 chemotaxis protein CheY compare
AO356_16175 -3.8 -7.2 acetolactate synthase 3 regulatory subunit compare
AO356_20830 -3.8 -2.6 phosphoadenosine phosphosulfate reductase compare
AO356_18275 -3.8 -12.2 ornithine carbamoyltransferase compare
AO356_16075 -3.7 -4.4 Fis family transcriptional regulator compare
AO356_14295 -3.7 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_11480 -3.7 -11.2 ABC transporter substrate-binding protein conserved
AO356_13605 -3.7 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO356_09815 -3.6 -6.0 imidazoleglycerol-phosphate dehydratase compare
AO356_16170 -3.6 -9.9 acetolactate synthase 3 catalytic subunit compare
AO356_14430 -3.6 -7.7 anthranilate synthase compare
AO356_10000 -3.6 -4.9 hypothetical protein compare
AO356_15815 -3.6 -2.5 gamma-glutamyl kinase compare
AO356_16180 -3.6 -13.4 ketol-acid reductoisomerase compare
AO356_12780 -3.6 -6.4 argininosuccinate lyase compare
AO356_10380 -3.6 -11.6 ATPase P compare
AO356_02175 -3.6 -9.3 transaldolase compare
AO356_07555 -3.5 -10.7 oxidoreductase conserved
AO356_00555 -3.5 -10.6 sulfite reductase compare
AO356_27205 -3.5 -7.1 hypothetical protein compare
AO356_07550 -3.5 -8.4 L-lactate and D-lactate permease (lctP family) (from data) conserved
AO356_14440 -3.5 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_10910 -3.5 -8.2 tryptophan synthase subunit alpha compare
AO356_12015 -3.4 -12.1 LysR family transcriptional regulator compare
AO356_12745 -3.4 -3.9 iron donor protein CyaY compare
AO356_12895 -3.4 -21.0 polyphosphate kinase compare
AO356_00355 -3.3 -9.4 chemotaxis protein CheY compare
AO356_09810 -3.3 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09520 -3.2 -5.3 phosphoribosyl-AMP cyclohydrolase compare
AO356_02265 -3.2 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_10300 -3.2 -4.6 3-phosphoglycerate dehydrogenase compare
AO356_06550 -3.2 -9.6 2-isopropylmalate synthase compare
AO356_17950 -3.2 -6.1 histidine kinase compare
AO356_21470 -3.2 -6.9 O-succinylhomoserine sulfhydrylase compare
AO356_01745 -3.1 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_18730 -3.1 -8.9 arginine N-succinyltransferase compare
AO356_27210 -3.1 -8.2 hypothetical protein compare
AO356_07495 -3.1 -3.6 molecular chaperone DnaJ compare
AO356_19795 -3.1 -3.0 glycerol-3-phosphate dehydrogenase compare
AO356_01740 -3.0 -3.5 DNA-binding protein compare
AO356_20155 -3.0 -6.6 phosphate acyltransferase compare
AO356_21465 -3.0 -4.9 amidophosphoribosyltransferase compare
AO356_01750 -3.0 -2.0 ATP-dependent Clp protease proteolytic subunit compare
AO356_19050 -3.0 -2.8 cysteine synthase compare
AO356_10340 -3.0 -12.7 phosphoserine phosphatase compare
AO356_17520 -3.0 -2.0 phosphoribosylformylglycinamidine synthase compare
AO356_16665 -2.9 -13.1 sulfate adenylyltransferase compare
AO356_22200 -2.9 -8.6 sirohydrochlorin ferrochelatase compare
AO356_27215 -2.8 -4.2 hypothetical protein compare
AO356_06575 -2.8 -2.7 outer membrane protein assembly factor BamB compare
AO356_06990 -2.8 -4.6 toluene tolerance protein compare
AO356_10330 -2.8 -14.5 threonine dehydratase compare
AO356_07480 -2.8 -1.9 carbamoyl phosphate synthase large subunit compare
AO356_11490 -2.8 -7.6 zinc ABC transporter ATP-binding protein conserved
AO356_22795 -2.7 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_07005 -2.7 -2.8 ABC transporter ATP-binding protein compare
AO356_02190 -2.7 -7.1 hypothetical protein compare
AO356_11610 -2.7 -1.8 glycerol acyltransferase compare
AO356_19085 -2.7 -7.7 phosphoribosylglycinamide formyltransferase compare
AO356_12520 -2.7 -2.6 orotate phosphoribosyltransferase compare
AO356_18245 -2.7 -7.2 DeoR family transcriptional regulator compare
AO356_06995 -2.7 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_27250 -2.7 -8.8 hypothetical protein compare
AO356_12375 -2.7 -12.1 histidine kinase compare
AO356_11025 -2.5 -4.8 transcriptional regulator PhoU compare
AO356_03095 -2.5 -8.0 protease HtpX compare
AO356_12990 -2.5 -7.3 5-formyltetrahydrofolate cyclo-ligase compare
AO356_10005 -2.5 -8.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_19090 -2.5 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_10140 -2.4 -9.9 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_02290 -2.4 -2.8 TetR family transcriptional regulator compare
AO356_03800 -2.4 -2.3 histidine kinase compare
AO356_16870 -2.4 -10.2 benzoate transporter compare
AO356_09425 -2.4 -8.2 malate dehydrogenase compare
AO356_07195 -2.4 -7.2 GntR family transcriptional regulator compare
AO356_12475 -2.4 -9.5 reactive intermediate/imine deaminase compare
AO356_02325 -2.3 -3.1 3-ketoacyl-CoA thiolase compare
AO356_09995 -2.3 -6.7 LysR family transcriptional regulator compare
AO356_11030 -2.3 -11.5 phosphate ABC transporter ATP-binding protein compare
AO356_10170 -2.2 -2.6 chemotaxis protein CheY compare
AO356_15165 -2.2 -2.9 protein cII compare
AO356_03435 -2.2 -3.5 integration host factor subunit beta compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_08905 -2.2 -2.5 glycosyl transferase compare
AO356_16670 -2.1 -10.9 adenylylsulfate kinase compare
AO356_13685 -2.1 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_04335 -2.1 -8.0 hypothetical protein compare
AO356_07000 -2.1 -3.7 ABC transporter permease compare
AO356_10185 -2.1 -7.0 glutamate--cysteine ligase compare
AO356_25750 -2.1 -3.5 GntR family transcriptional regulator compare
AO356_04330 -2.0 -5.6 allophanate hydrolase compare
AO356_09835 -2.0 -6.1 iron transporter compare
AO356_10920 -2.0 -8.7 LysR family transcriptional regulator compare
AO356_06960 -2.0 -6.3 histidinol-phosphate aminotransferase compare
AO356_11315 -2.0 -1.3 shikimate dehydrogenase compare
AO356_03500 -2.0 -3.8 3-oxoacyl-ACP reductase compare
AO356_19420 -2.0 -1.3 septum formation inhibitor compare
AO356_21330 -2.0 -8.5 aromatic amino acid aminotransferase compare
AO356_20475 -1.9 -2.2 hypothetical protein compare
AO356_02580 -1.9 -3.9 GntR family transcriptional regulator compare
AO356_16185 -1.9 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_14790 -1.9 -7.7 MFS transporter compare
AO356_13475 -1.9 -6.1 glutathione synthetase compare
AO356_17890 -1.9 -2.7 H-NS histone compare
AO356_30345 -1.8 -5.1 IclR family transcriptional regulator compare
AO356_03375 -1.8 -1.2 ExsB family protein compare
AO356_04560 -1.8 -2.4 serine peptidase compare
AO356_05995 -1.8 -2.8 hypothetical protein compare
AO356_06690 -1.8 -2.7 queuine tRNA-ribosyltransferase compare
AO356_14135 -1.7 -10.9 biotin synthase compare
AO356_24580 -1.7 -5.2 GntR family transcriptional regulator compare
AO356_05640 -1.7 -4.2 LuxR family transcriptional regulator compare
AO356_09540 -1.7 -1.1 twin-arginine protein translocation system subunit TatC compare
AO356_00575 -1.7 -1.9 SCP-2 family sterol carrier protein compare
AO356_11040 -1.7 -12.3 phosphate ABC transporter permease compare
AO356_03180 -1.7 -4.0 CysB family transcriptional regulator compare
AO356_16690 -1.6 -4.8 peptidylprolyl isomerase compare
AO356_20880 -1.6 -1.8 3-methylitaconate isomerase compare
AO356_19425 -1.6 -1.2 lipid A biosynthesis lauroyl acyltransferase compare
AO356_08235 -1.6 -6.8 histidine kinase compare
AO356_02460 -1.6 -2.1 hypothetical protein compare
AO356_00525 -1.6 -2.2 cobalamin biosynthesis protein CobE compare
AO356_04325 -1.6 -3.3 allophanate hydrolase compare
AO356_27180 -1.6 -2.7 hypothetical protein compare
AO356_07910 -1.6 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_21515 -1.5 -1.7 antitoxin compare
AO356_01630 -1.5 -4.1 anti-sigma factor compare
AO356_18155 -1.5 -2.0 cold-shock protein compare
AO356_07050 -1.5 -6.5 glmZ(sRNA)-inactivating NTPase compare
AO356_11045 -1.5 -8.5 phosphate-binding protein compare
AO356_18025 -1.5 -2.4 ATP-dependent DNA helicase RuvB compare
AO356_17020 -1.5 -4.4 cytochrome D ubiquinol oxidase subunit III compare
AO356_12945 -1.5 -4.3 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_08290 -1.4 -3.1 precorrin-6Y C5,15-methyltransferase compare
AO356_02205 -1.4 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_07385 -1.4 -1.5 tRNA-Thr compare
AO356_27230 -1.4 -3.7 hypothetical protein compare
AO356_11035 -1.4 -7.2 phosphate ABC transporter permease compare
AO356_18735 -1.4 -4.2 arginine N-succinyltransferase compare
AO356_12640 -1.4 -2.4 cytochrome C compare
AO356_12795 -1.4 -7.3 heme biosynthesis operon protein HemX compare
AO356_02830 -1.4 -6.8 transcriptional regulator compare
AO356_09640 -1.4 -4.2 histidine utilization repressor compare
AO356_19225 -1.4 -7.9 histidine kinase compare
AO356_11585 -1.4 -3.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_11465 -1.4 -6.5 DNA polymerase I compare
AO356_12785 -1.4 -8.5 chemotaxis protein CheY compare
AO356_19170 -1.3 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_13485 -1.3 -2.3 chemotaxis protein CheY compare
AO356_18020 -1.3 -2.5 ATP-dependent DNA helicase RuvA compare
AO356_12725 -1.3 -3.4 recombinase XerC compare
AO356_26350 -1.3 -2.3 acetyl-CoA acetyltransferase compare
AO356_17075 -1.3 -1.2 cytochrome C compare
AO356_19135 -1.3 -3.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_16850 -1.3 -7.1 serine hydroxymethyltransferase compare
AO356_04570 -1.3 -5.4 RNA polymerase subunit sigma compare
AO356_10075 -1.3 -4.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_19165 -1.3 -2.3 adenosylcobinamide kinase compare
AO356_15325 -1.3 -1.1 hypothetical protein compare
AO356_25665 -1.3 -1.7 3-beta hydroxysteroid dehydrogenase compare
AO356_00545 -1.3 -6.9 methionine synthase compare
AO356_10985 -1.3 -4.0 chorismate--pyruvate lyase compare
AO356_00500 -1.2 -2.7 magnesium chelatase compare
AO356_08895 -1.2 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_20875 -1.2 -5.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_27995 -1.2 -1.4 thioredoxin reductase compare
AO356_27240 -1.2 -3.0 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source Sodium D-Lactate in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium D-Lactate across organisms