Experiment set1IT033 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Nitrofurantoin 125 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_1544 -4.4 -3.0 SirA-like protein compare
Psyr_0951 -4.2 -4.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1974 -4.1 -8.7 Excinuclease ABC subunit B conserved
Psyr_4340 -4.0 -3.9 phosphomethylpyrimidine kinase, putative compare
Psyr_0393 -3.9 -3.8 Protein of unknown function DUF971 compare
Psyr_1613 -3.9 -3.7 septum site-determining protein MinC compare
Psyr_4520 -3.8 -17.9 Excinuclease ABC subunit A conserved
Psyr_4581 -3.8 -4.3 anthranilate synthase, component II compare
Psyr_4686 -3.6 -3.5 8-amino-7-oxononanoate synthase compare
Psyr_4341 -3.4 -8.4 thiamine-phosphate diphosphorylase compare
Psyr_2896 -3.3 -11.5 Excinuclease ABC subunit C conserved
Psyr_4683 -3.3 -4.4 dethiobiotin synthase compare
Psyr_4136 -3.1 -3.0 BolA-like protein compare
Psyr_4740 -2.9 -6.7 thiazole-phosphate synthase compare
Psyr_4687 -2.8 -6.2 biotin synthase compare
Psyr_1378 -2.8 -1.9 RecA protein compare
Psyr_0487 -2.8 -3.2 glutathione synthase compare
Psyr_1410 -2.8 -5.4 Holliday junction DNA helicase RuvB compare
Psyr_3396 -2.7 -6.6 DNA replication and repair protein RecR conserved
Psyr_0201 -2.7 -9.3 ATP-dependent DNA helicase RecG compare
Psyr_3008 -2.6 -6.3 Undecaprenyl-diphosphatase compare
Psyr_3949 -2.5 -6.4 DNA replication and repair protein RecO conserved
Psyr_0454 -2.4 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0255 -2.3 -2.6 glutamate-cysteine ligase compare
Psyr_1408 -2.3 -3.3 Holliday junction endonuclease RuvC compare
Psyr_0475 -2.3 -3.7 Protein of unknown function YGGT compare
Psyr_1650 -2.3 -3.9 aminodeoxychorismate lyase apoprotein compare
Psyr_2080 -2.3 -7.0 aminodeoxychorismate synthase, subunit I compare
Psyr_0003 -2.3 -12.3 DNA replication and repair protein RecF conserved
Psyr_4115 -2.2 -3.1 phosphoheptose isomerase compare
Psyr_0565 -2.2 -7.0 Protein of unknown function UPF0126 compare
Psyr_4091 -2.0 -5.3 8-oxo-dGTPase compare
Psyr_2855 -2.0 -4.5 methionine synthase (B12-independent) compare
Psyr_1751 -1.9 -5.3 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1907 -1.9 -3.8 GTP cyclohydrolase I compare
Psyr_0259 -1.9 -4.0 Osmolarity sensor protein envZ compare
Psyr_3090 -1.8 -4.0 hypothetical protein compare
Psyr_5065 -1.8 -7.9 ATP-dependent DNA helicase UvrD compare
Psyr_1555 -1.8 -4.9 Cobyrinic acid a,c-diamide synthase compare
Psyr_0917 -1.8 -8.1 ABC-2 compare
Psyr_4684 -1.8 -3.0 biotin synthesis protein BioC compare
Psyr_0918 -1.7 -9.8 ABC transporter compare
Psyr_4408 -1.7 -7.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_0383 -1.7 -2.6 Twin-arginine translocation protein TatB compare
Psyr_3199 -1.7 -2.7 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_5072 -1.6 -1.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_0579 -1.6 -9.8 RNAse R compare
Psyr_4203 -1.6 -2.3 SsrA-binding protein compare
Psyr_1748 -1.6 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3701 -1.6 -2.4 thioredoxin, putative compare
Psyr_4991 -1.6 -2.0 hypothetical protein compare
Psyr_4089 -1.6 -5.4 PAS compare
Psyr_4920 -1.5 -2.3 conserved hypothetical bacteriophage protein compare
Psyr_0976 -1.5 -4.2 Malate:quinone-oxidoreductase compare
Psyr_2854 -1.5 -5.2 conserved hypothetical protein compare
Psyr_4460 -1.5 -2.3 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_1371 -1.5 -6.3 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_0549 -1.4 -2.3 Metallophosphoesterase compare
Psyr_1556 -1.4 -2.4 hypothetical protein compare
Psyr_4627 -1.4 -2.4 dimethyladenosine transferase compare
Psyr_1227 -1.4 -2.9 Queuosine biosynthesis protein compare
Psyr_0044 -1.3 -2.0 transferase hexapeptide repeat protein compare
Psyr_0303 -1.3 -3.9 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0849 -1.3 -7.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_5135 -1.3 -2.1 Protein of unknown function DUF37 compare
Psyr_1747 -1.3 -3.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_2243 -1.3 -3.2 Endoribonuclease L-PSP compare
Psyr_2461 -1.3 -3.4 Uncharacterized conserved protein UCP030820 compare
Psyr_1749 -1.3 -5.3 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_1372 -1.3 -3.8 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_2196 -1.2 -2.2 Urease accessory protein UreG compare
Psyr_1935 -1.2 -4.6 Protein of unknown function DUF796 compare
Psyr_0202 -1.2 -5.9 transcriptional regulator, LysR family compare
Psyr_1268 -1.2 -4.8 extracellular solute-binding protein, family 3:SLT compare
Psyr_1930 -1.2 -3.0 hypothetical protein compare
Psyr_5133 -1.2 -2.8 tRNA modification GTPase trmE compare
Psyr_0185 -1.2 -5.2 tyrosine recombinase XerC subunit compare
Psyr_0827 -1.2 -4.0 pantothenate synthetase compare
Psyr_1286 -1.2 -5.0 tyrosine recombinase XerD subunit compare
Psyr_1247 -1.2 -2.0 conserved hypothetical protein compare
Psyr_5130 -1.1 -6.1 chromosome segregation ATPase compare
Psyr_4009 -1.1 -5.7 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0571 -1.1 -2.5 tRNA isopentenyltransferase compare
Psyr_3208 -1.1 -1.7 NADH dehydrogenase subunit M compare
Psyr_2897 -1.1 -3.3 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0524 -1.1 -3.0 Lipopolysaccharide kinase compare
Psyr_2095 -1.1 -4.1 Conserved TM helix compare
Psyr_3954 -1.1 -3.7 GTP-binding protein LepA compare
Psyr_3728 -1.0 -4.0 hypothetical protein compare
Psyr_0132 -1.0 -3.1 conserved hypothetical protein compare
Psyr_4362 -1.0 -2.5 Rare lipoprotein A compare
Psyr_3198 -1.0 -1.8 NADH dehydrogenase subunit B compare
Psyr_2488 -1.0 -2.5 hypothetical protein compare
Psyr_0826 -1.0 -4.2 glucose-6-phosphate isomerase compare
Psyr_1121 -1.0 -1.5 6-phosphogluconolactonase compare
Psyr_3581 -1.0 -4.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_3419 -1.0 -3.2 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_1975 -1.0 -2.8 Integrase, catalytic region compare
Psyr_2346 -1.0 -4.0 conserved hypothetical protein compare
Psyr_4197 -1.0 -6.0 DNA replication and repair protein RecN conserved
Psyr_0014 -1.0 -2.2 lipid A biosynthesis acyltransferase compare
Psyr_3567 -1.0 -1.4 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_0574 -1.0 -3.6 protease FtsH subunit HflK compare
Psyr_2980 -0.9 -2.4 UDP-glucose pyrophosphorylase compare
Psyr_2642 -0.9 -2.6 hypothetical protein compare
Psyr_2029 -0.9 -3.1 Protein of unknown function UPF0118 compare
Psyr_3738 -0.9 -4.9 ATP-dependent DNA helicase RecQ compare
Psyr_2641 -0.9 -2.7 hypothetical protein compare
Psyr_1717 -0.9 -1.9 TPR repeat:von Willebrand factor, type A compare
Psyr_1418 -0.9 -2.2 Radical SAM compare
Psyr_2921 -0.9 -1.2 ADP-ribosylglycohydrolase compare
Psyr_4029 -0.9 -4.3 pyruvate kinase compare
Psyr_2071 -0.9 -1.0 outer membrane lipoprotein OprI compare
Psyr_0954 -0.9 -2.3 Protein of unknown function UPF0153 compare
Psyr_2848 -0.9 -2.6 hypothetical protein compare
Psyr_3133 -0.9 -1.7 Amidohydrolase 2 compare
Psyr_2462 -0.9 -3.1 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1929 -0.9 -3.8 hypothetical protein compare
Psyr_4512 -0.9 -3.8 putative phage-related protein compare
Psyr_0373 -0.9 -1.9 CDS compare
Psyr_4887 -0.9 -5.6 Peptidase S41A, C-terminal protease compare
Psyr_3179 -0.9 -1.9 DNA translocase FtsK compare
Psyr_2347 -0.8 -2.3 hypothetical protein compare
Psyr_1667 -0.8 -3.3 Colicin V production protein compare
Psyr_3601 -0.8 -1.3 conserved hypothetical protein compare
Psyr_3673 -0.8 -1.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1094 -0.8 -2.3 cold-shock DNA-binding protein family compare
Psyr_5129 -0.8 -2.7 chromosome segregation DNA-binding protein compare
Psyr_2977 -0.8 -3.0 cointegrate resolution protein T compare
Psyr_4316 -0.8 -1.8 conserved hypothetical protein compare
Psyr_2823 -0.8 -1.6 hypothetical protein compare
Psyr_4902 -0.8 -1.7 Protein of unknown function DUF495 compare
Psyr_2913 -0.8 -3.5 transcriptional regulator, LysR family compare
Psyr_1460 -0.8 -2.5 hypothetical protein compare
Psyr_4019 -0.8 -2.4 H-NS family protein MvaT compare
Psyr_2348 -0.8 -1.7 hypothetical protein compare
Psyr_4424 -0.8 -4.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4230 -0.8 -4.0 Helix-turn-helix, Fis-type compare
Psyr_4309 -0.8 -3.1 hypothetical protein compare
Psyr_0947 -0.8 -3.9 TPR repeat protein:TPR repeat protein compare
Psyr_3905 -0.8 -3.9 glycerol kinase compare
Psyr_3055 -0.8 -1.7 Aminoglycoside phosphotransferase compare
Psyr_0033 -0.8 -2.4 tryptophan synthase, alpha chain compare
Psyr_4658 -0.8 -1.5 CDS compare
Psyr_1931 -0.8 -3.4 hypothetical protein compare
Psyr_3039 -0.8 -1.8 protein of unknown function DUF883 compare
Psyr_3088 -0.8 -2.9 Glycosyl transferase, group 1 compare
Psyr_3776 -0.8 -2.7 Cytosine deaminase compare
Psyr_1505 -0.8 -2.0 Protein of unknown function DUF156 compare
Psyr_0349 -0.8 -2.5 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1140 -0.8 -2.1 Disulfide bond formation protein DsbB compare
Psyr_3806 -0.8 -2.4 hypothetical protein compare
Psyr_0037 -0.7 -2.0 Protein of unknown function DUF1458 compare
Psyr_4118 -0.7 -3.7 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_0490 -0.7 -2.7 CheW-like protein compare
Psyr_2872 -0.7 -1.5 hypothetical protein compare
Psyr_4476 -0.7 -3.2 dTDP-4-dehydrorhamnose reductase compare
Psyr_0179 -0.7 -2.1 Protein of unknown function DUF1289 compare
Psyr_3547 -0.7 -2.1 transcriptional regulator, TetR family compare
Psyr_0832 -0.7 -3.9 Two-component sensor kinase CbrA compare
Psyr_3342 -0.7 -1.3 conserved hypothetical protein compare
Psyr_3739 -0.7 -1.9 conserved hypothetical protein compare
Psyr_3290 -0.7 -2.0 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_0567 -0.7 -2.8 Protein of unknown function UPF0031:YjeF-related protein, N-terminal compare
Psyr_0184 -0.7 -2.0 Protein of unknown function DUF484 compare
Psyr_4940 -0.7 -1.0 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_2065 -0.7 -3.0 transcription elongation factor GreB compare
Psyr_1417 -0.7 -3.1 TPR repeat protein compare
Psyr_1294 -0.7 -1.8 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0528 -0.7 -1.4 Carbamoyltransferase compare
Psyr_2474 -0.7 -1.9 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_3107 -0.7 -1.8 conserved hypothetical protein compare
Psyr_3020 -0.7 -0.9 precorrin-4 C11-methyltransferase compare
Psyr_3142 -0.7 -1.7 general secretion pathway protein N, putative compare
Psyr_1687 -0.7 -2.2 Rhomboid-like protein compare
Psyr_0041 -0.7 -1.7 Protein of unknown function DUF1161 compare
Psyr_1424 -0.7 -1.3 Peptidase S24, S26A and S26B compare
Psyr_3240 -0.7 -1.0 CTP synthase compare
Psyr_1919 -0.7 -3.3 hypothetical protein compare
Psyr_0575 -0.7 -2.0 protease FtsH subunit HflC compare
Psyr_0498 -0.7 -1.9 Protein of unknown function DUF1445 compare
Psyr_1373 -0.7 -1.5 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2779 -0.7 -1.5 Phage minor tail compare
Psyr_0369 -0.7 -2.4 lipoprotein, putative compare
Psyr_3862 -0.7 -2.4 conserved hypothetical protein compare
Psyr_3681 -0.7 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_4231 -0.7 -4.4 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal conserved
Psyr_4278 -0.7 -1.4 regulatory protein, LuxR compare
Psyr_2087 -0.7 -3.3 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) compare
Psyr_3162 -0.7 -1.7 Metalloprotease inhibitor/calysin compare
Psyr_3692 -0.7 -1.2 conserved hypothetical protein compare
Psyr_1780 -0.7 -1.5 transcriptional regulator, TetR family compare
Psyr_0550 -0.6 -1.8 Protein of unknown function UPF0227 compare
Psyr_2557 -0.6 -1.0 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4140 -0.6 -1.5 Protein of unknown function DUF140 compare
Psyr_4139 -0.6 -2.7 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_3809 -0.6 -2.7 hypothetical protein compare
Psyr_3164 -0.6 -3.5 Protein of unknown function UPF0005 compare
Psyr_1843 -0.6 -1.4 Protein of unknown function DUF1311 compare
Psyr_0426 -0.6 -1.2 lipoprotein, putative compare


Specific Phenotypes

For 7 genes in this experiment

For stress Nitrofurantoin in Pseudomonas syringae pv. syringae B728a

For stress Nitrofurantoin across organisms