Experiment set1IT033 for Cupriavidus basilensis FW507-4G11

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS01385 -6.5 -4.5 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14365 -6.4 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -5.7 -4.0 chorismate synthase compare
RR42_RS19005 -5.2 -5.0 3-dehydroquinate synthase compare
RR42_RS30655 -5.1 -6.9 LysR family transcriptional regulator compare
RR42_RS16255 -5.0 -8.4 sulfate adenylyltransferase compare
RR42_RS16265 -4.9 -4.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS17645 -4.7 -5.5 shikimate dehydrogenase compare
RR42_RS18300 -4.6 -6.2 anthranilate synthase subunit II compare
RR42_RS14390 -4.5 -4.4 3-isopropylmalate dehydratase compare
RR42_RS04475 -4.4 -11.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS05860 -4.4 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14320 -4.3 -5.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS18295 -4.3 -11.5 anthranilate synthase component I compare
RR42_RS16250 -4.3 -7.1 sulfate adenylyltransferase compare
RR42_RS33255 -4.2 -4.1 protein-tyrosine phosphatase compare
RR42_RS16245 -4.1 -5.6 uroporphyrin-III methyltransferase compare
RR42_RS33260 -4.1 -7.3 multidrug MFS transporter compare
RR42_RS33240 -4.1 -14.7 GDP-L-fucose synthase compare
RR42_RS18855 -4.0 -2.8 preprotein translocase compare
RR42_RS19010 -4.0 -8.1 shikimate kinase compare
RR42_RS01160 -3.9 -9.7 homoserine O-acetyltransferase compare
RR42_RS14385 -3.8 -6.8 3-isopropylmalate dehydrogenase compare
RR42_RS01845 -3.8 -2.6 glycerol-3-phosphate dehydrogenase compare
RR42_RS14400 -3.8 -4.5 isopropylmalate isomerase compare
RR42_RS30660 -3.8 -9.0 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16280 -3.7 -6.4 transcriptional regulator compare
RR42_RS18305 -3.6 -4.8 anthranilate phosphoribosyltransferase compare
RR42_RS16275 -3.6 -3.7 membrane protein compare
RR42_RS33210 -3.5 -7.4 teichoic acid biosynthesis protein compare
RR42_RS20205 -3.4 -4.0 chromosome partitioning protein compare
RR42_RS05990 -3.3 -8.1 aromatic amino acid aminotransferase compare
RR42_RS16270 -3.3 -8.9 sulfite reductase compare
RR42_RS14360 -3.2 -2.1 tryptophan synthase subunit alpha compare
RR42_RS18990 -3.1 -18.3 glutamate synthase compare
RR42_RS33250 -3.1 -7.7 tyrosine protein kinase compare
RR42_RS33235 -3.1 -8.1 GDP-mannose 4,6-dehydratase compare
RR42_RS01290 -3.1 -7.5 thiamine biosynthesis protein ThiC compare
RR42_RS33355 -3.0 -4.7 membrane protein compare
RR42_RS21220 -2.9 -2.8 iron transporter FeoB compare
RR42_RS16240 -2.8 -1.9 cobalamin biosynthesis protein CbiX compare
RR42_RS18985 -2.8 -7.2 glutamate synthase compare
RR42_RS04535 -2.6 -5.5 cysteine synthase compare
RR42_RS18850 -2.6 -2.4 preprotein translocase subunit TatC compare
RR42_RS04460 -2.6 -5.1 chorismate mutase compare
RR42_RS07365 -2.6 -3.8 pyruvate dehydrogenase compare
RR42_RS11795 -2.5 -3.3 PEP synthetase regulatory protein compare
RR42_RS34570 -2.5 -2.3 hypothetical protein compare
RR42_RS18270 -2.4 -4.5 murein transglycosylase compare
RR42_RS33245 -2.4 -6.8 mannose-1-phosphate guanyltransferase compare
RR42_RS04470 -2.4 -5.3 prephenate dehydrogenase compare
RR42_RS15895 -2.2 -7.2 uroporphyrinogen III methyltransferase compare
RR42_RS27060 -2.2 -2.6 cation transporter compare
RR42_RS15890 -2.1 -7.7 heme biosynthesis protein HemY compare
RR42_RS11790 -2.1 -9.7 phosphoenolpyruvate synthase compare
RR42_RS14965 -2.1 -4.6 hypothetical protein compare
RR42_RS18840 -2.1 -4.7 2-alkenal reductase compare
RR42_RS15740 -2.0 -3.2 hypothetical protein compare
RR42_RS20625 -2.0 -7.7 histidine kinase compare
RR42_RS35875 -1.9 -9.1 UDP-galactose-4-epimerase compare
RR42_RS04325 -1.9 -3.1 membrane protein compare
RR42_RS29865 -1.9 -3.3 hypothetical protein compare
RR42_RS13910 -1.8 -6.2 glutamate racemase compare
RR42_RS03530 -1.8 -1.7 hypothetical protein compare
RR42_RS33215 -1.8 -8.5 transferase compare
RR42_RS15720 -1.8 -5.0 hypothetical protein compare
RR42_RS35250 -1.7 -1.8 alpha/beta hydrolase compare
RR42_RS19090 -1.7 -1.9 cytochrome C compare
RR42_RS15410 -1.7 -2.9 membrane protein compare
RR42_RS31530 -1.7 -2.8 histidine kinase compare
RR42_RS18825 -1.7 -2.4 ubiquinol-cytochrome C reductase compare
RR42_RS12050 -1.7 -5.2 DNA polymerase compare
RR42_RS13800 -1.6 -6.7 formyltetrahydrofolate deformylase compare
RR42_RS30640 -1.6 -5.8 DNA mismatch repair protein MutT compare
RR42_RS01255 -1.6 -6.0 lauroyl acyltransferase compare
RR42_RS27010 -1.6 -7.0 D-3-phosphoglycerate dehydrogenase compare
RR42_RS06020 -1.6 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS23140 -1.6 -1.7 peptidylprolyl isomerase compare
RR42_RS01260 -1.6 -6.0 lauroyl acyltransferase compare
RR42_RS27470 -1.5 -1.2 peroxiredoxin OsmC compare
RR42_RS26935 -1.5 -3.1 farnesyl-diphosphate farnesyltransferase compare
RR42_RS20635 -1.5 -8.7 iron ABC transporter substrate-binding protein conserved
RR42_RS04960 -1.5 -4.1 Fe(II)-dependent oxygenase compare
RR42_RS16260 -1.5 -1.0 phosphoadenosine phosphosulfate reductase compare
RR42_RS13040 -1.5 -4.2 iron transporter compare
RR42_RS34815 -1.4 -3.1 diguanylate cyclase compare
RR42_RS29530 -1.4 -6.6 malate permease conserved
RR42_RS13365 -1.4 -2.1 peptidase P60 compare
RR42_RS20630 -1.4 -4.1 transcriptional regulator compare
RR42_RS08590 -1.4 -2.0 baseplate assembly protein compare
RR42_RS14395 -1.4 -1.9 entericidin compare
RR42_RS14055 -1.3 -2.5 elongation factor 4 compare
RR42_RS06545 -1.3 -1.7 thioesterase compare
RR42_RS01795 -1.3 -8.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS02500 -1.3 -1.9 TetR family transcriptional regulator compare
RR42_RS24605 -1.3 -6.8 TetR family transcriptional regulator compare
RR42_RS15775 -1.3 -6.0 N-acetylneuraminate synthase compare
RR42_RS07605 -1.3 -3.9 poly-beta-hydroxybutyrate polymerase compare
RR42_RS17730 -1.3 -2.7 hypothetical protein compare
RR42_RS05420 -1.3 -3.4 membrane protein compare
RR42_RS15470 -1.3 -1.9 biopolymer transporter ExbD compare
RR42_RS07565 -1.3 -5.1 transcription accessory protein compare
RR42_RS15745 -1.3 -5.9 group1 glycosyl transferase compare
RR42_RS08770 -1.3 -1.3 2-nitropropane dioxygenase compare
RR42_RS14080 -1.2 -6.4 RNA polymerase sigma factor RpoE compare
RR42_RS13190 -1.2 -3.5 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS15710 -1.2 -5.6 LPS biosynthesis protein compare
RR42_RS04980 -1.2 -2.2 hypothetical protein compare
RR42_RS29280 -1.2 -1.3 hypothetical protein compare
RR42_RS15475 -1.2 -4.9 protein tolQ compare
RR42_RS03415 -1.2 -4.2 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS19065 -1.2 -6.7 transcriptional regulator compare
RR42_RS19445 -1.2 -5.0 TetR family transcriptional regulator compare
RR42_RS12040 -1.2 -5.5 MFS transporter compare
RR42_RS00715 -1.2 -2.2 ferritin compare
RR42_RS25785 -1.2 -2.2 TetR family transcriptional regulator compare
RR42_RS04895 -1.1 -7.2 serine/threonine protein phosphatase compare
RR42_RS17050 -1.1 -4.2 phosphoribosylglycinamide formyltransferase compare
RR42_RS12925 -1.1 -1.8 ATPase compare
RR42_RS13905 -1.1 -3.9 fumarate hydratase compare
RR42_RS02810 -1.1 -1.7 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS17720 -1.1 -1.7 sugar kinase compare
RR42_RS07140 -1.1 -1.6 hypothetical protein compare
RR42_RS19685 -1.1 -1.6 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS02705 -1.1 -1.8 Holliday junction DNA helicase RuvA compare
RR42_RS24980 -1.1 -1.5 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS12550 -1.1 -3.2 hypothetical protein compare
RR42_RS16195 -1.1 -2.4 haloacid dehalogenase compare
RR42_RS15450 -1.1 -2.4 Tol system periplasmic component YbgF compare
RR42_RS01775 -1.1 -2.8 glutamate--cysteine ligase compare
RR42_RS32235 -1.1 -3.3 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS03085 -1.1 -1.1 RecX family transcriptional regulator compare
RR42_RS10400 -1.1 -2.5 hypothetical protein compare
RR42_RS02540 -1.1 -2.7 taurine ABC transporter permease compare
RR42_RS09015 -1.1 -2.7 trigger factor compare
RR42_RS25755 -1.1 -2.4 IclR family transcriptional regulator compare
RR42_RS29490 -1.0 -2.4 toxin HipA compare
RR42_RS09085 -1.0 -0.7 C4-dicarboxylate ABC transporter permease compare
RR42_RS15035 -1.0 -3.7 ZIP zinc transporter compare
RR42_RS01380 -1.0 -1.2 membrane protein compare
RR42_RS15415 -1.0 -1.5 membrane protein compare
RR42_RS10245 -1.0 -1.8 dehydratase compare
RR42_RS15750 -1.0 -3.5 hypothetical protein compare
RR42_RS24040 -1.0 -3.1 hypothetical protein compare
RR42_RS37455 -1.0 -1.6 hypothetical protein compare
RR42_RS01885 -1.0 -3.9 cytochrome C oxidase assembly protein compare
RR42_RS19410 -1.0 -4.1 GntR family transcriptional regulator compare
RR42_RS27055 -1.0 -3.9 membrane protein compare
RR42_RS17885 -1.0 -3.3 ABC transporter permease compare
RR42_RS07360 -1.0 -2.6 ATPase compare
RR42_RS23515 -1.0 -3.3 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS29535 -1.0 -5.9 isocitrate dehydrogenase compare
RR42_RS31495 -1.0 -1.3 Cro/Cl family transcriptional regulator compare
RR42_RS36120 -1.0 -3.3 LysR family transcriptional regulator compare
RR42_RS15460 -1.0 -3.2 translocation protein TolB compare
RR42_RS01920 -1.0 -1.7 protoheme IX farnesyltransferase compare
RR42_RS12590 -1.0 -0.9 50S ribosomal protein L9 compare
RR42_RS17105 -1.0 -5.0 Clp protease ClpX compare
RR42_RS31290 -1.0 -2.1 XRE family transcriptional regulator compare
RR42_RS18970 -1.0 -5.9 toluene ABC transporter ATP-binding protein compare
RR42_RS27530 -0.9 -1.4 hypothetical protein compare
RR42_RS31885 -0.9 -2.5 sialidase compare
RR42_RS08260 -0.9 -1.6 hypothetical protein compare
RR42_RS07130 -0.9 -2.1 hypothetical protein compare
RR42_RS11580 -0.9 -1.7 hypothetical protein compare
RR42_RS02420 -0.9 -0.8 SAM-dependent methyltransferase compare
RR42_RS17060 -0.9 -6.9 histidine kinase compare
RR42_RS22180 -0.9 -1.7 hypothetical protein compare
RR42_RS14355 -0.9 -4.1 DNA methylase N-4 compare
RR42_RS18965 -0.9 -7.0 ABC transporter permease compare
RR42_RS15770 -0.9 -3.2 hypothetical protein compare
RR42_RS18995 -0.9 -4.3 transposase compare
RR42_RS25400 -0.9 -2.4 MarR family transcriptional regulator compare
RR42_RS26050 -0.9 -2.8 hypothetical protein compare
RR42_RS21000 -0.9 -1.3 glycosyl transferase compare
RR42_RS15420 -0.9 -1.8 hypothetical protein compare
RR42_RS02045 -0.9 -5.2 GTPase compare
RR42_RS31900 -0.9 -2.0 short-chain dehydrogenase compare
RR42_RS14790 -0.8 -5.0 cobalamin biosynthesis protein CobD compare
RR42_RS04320 -0.8 -2.8 cell division protein FtsK compare
RR42_RS25200 -0.8 -3.1 TetR family transcriptional regulator compare
RR42_RS30345 -0.8 -2.4 XRE family transcriptional regulator compare
RR42_RS15785 -0.8 -4.1 glycosyl transferase family 28 compare
RR42_RS08000 -0.8 -1.0 hypothetical protein compare
RR42_RS23870 -0.8 -1.7 hypothetical protein compare
RR42_RS06955 -0.8 -3.4 hypothetical protein compare
RR42_RS12615 -0.8 -1.4 LexA family transcriptional regulator compare
RR42_RS19440 -0.8 -2.2 DNA repair protein compare
RR42_RS18420 -0.8 -4.2 hypothetical protein compare
RR42_RS11635 -0.8 -2.7 signal transduction protein compare
RR42_RS23305 -0.8 -1.0 hypothetical protein compare
RR42_RS17390 -0.8 -3.8 ATP-dependent DNA helicase RecG compare
RR42_RS25470 -0.8 -1.0 alpha/beta hydrolase compare
RR42_RS15735 -0.8 -5.2 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS32595 -0.8 -3.0 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS31205 -0.8 -2.0 phospho-N-acetylmuramoyl-pentapeptide transferase compare
RR42_RS13025 -0.8 -2.4 hypothetical protein compare
RR42_RS16670 -0.8 -2.1 cytochrome C compare
RR42_RS20075 -0.8 -3.1 hypothetical protein compare
RR42_RS05895 -0.8 -1.2 rhombosortase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Trisodium citrate dihydrate in Cupriavidus basilensis FW507-4G11

For carbon source Trisodium citrate dihydrate across organisms