Experiment set1IT033 for Burkholderia phytofirmans PsJN

Compare to:

LB with Paraquat dichloride 0.032 mg/ml

200 most important genes:

  gene name fitness t score description  
BPHYT_RS12785 -4.1 -3.1 Rrf2 family transcriptional regulator compare
BPHYT_RS15710 -3.8 -2.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS03480 -3.6 -5.9 ferritin compare
BPHYT_RS08960 -3.3 -2.2 threonine synthase compare
BPHYT_RS09515 -3.2 -6.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04965 -3.2 -6.4 ATP-binding protein compare
BPHYT_RS15620 -3.1 -4.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03725 -2.8 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS20235 -2.7 -6.3 iron ABC transporter compare
BPHYT_RS08600 -2.7 -1.7 hypothetical protein compare
BPHYT_RS12990 -2.6 -2.1 iron transporter compare
BPHYT_RS08850 -2.5 -1.8 transcriptional regulator compare
BPHYT_RS03815 -2.5 -4.8 MFS transporter permease conserved
BPHYT_RS12985 -2.2 -2.5 amino acid acetyltransferase compare
BPHYT_RS06400 -2.1 -3.1 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS36400 -2.0 -1.3 hypothetical protein compare
BPHYT_RS00705 -2.0 -1.8 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS12840 -2.0 -3.7 pyruvate dehydrogenase compare
BPHYT_RS20245 -2.0 -3.2 iron ABC transporter substrate-binding protein compare
BPHYT_RS16290 -1.9 -1.2 hypothetical protein compare
BPHYT_RS03090 -1.9 -1.6 hypothetical protein compare
BPHYT_RS15190 -1.9 -1.4 acyl carrier protein compare
BPHYT_RS13605 -1.9 -1.0 tRNA-Pro compare
BPHYT_RS06405 -1.9 -5.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS14895 -1.8 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16065 -1.8 -1.1 LacI family transcriptional regulator compare
BPHYT_RS19335 -1.8 -3.6 hypothetical protein compare
BPHYT_RS20220 -1.7 -1.7 antibiotic synthesis protein MbtH compare
BPHYT_RS16255 -1.7 -4.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS15015 -1.7 -1.6 ArsR family transcriptional regulator compare
BPHYT_RS25820 -1.7 -2.1 sugar ABC transporter compare
BPHYT_RS16245 -1.7 -4.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08525 -1.7 -1.3 SAM-dependent methyltransferase compare
BPHYT_RS33765 -1.7 -1.0 membrane protein compare
BPHYT_RS28595 -1.7 -1.5 glyoxalase compare
BPHYT_RS10995 -1.7 -1.9 GntR family transcriptional regulator compare
BPHYT_RS18340 -1.7 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS18910 -1.6 -1.5 FlgN compare
BPHYT_RS34295 -1.6 -1.0 fimbrial protein compare
BPHYT_RS27495 -1.5 -1.1 hypothetical protein compare
BPHYT_RS09000 -1.5 -1.2 competence protein ComE compare
BPHYT_RS20970 -1.5 -1.6 hypothetical protein compare
BPHYT_RS04335 -1.5 -1.4 membrane protein compare
BPHYT_RS16840 -1.4 -2.6 transketolase compare
BPHYT_RS03640 -1.4 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS20715 -1.4 -1.5 peptidase compare
BPHYT_RS08415 -1.4 -1.5 hypothetical protein compare
BPHYT_RS13815 -1.4 -2.4 hypothetical protein compare
BPHYT_RS25335 -1.4 -0.9 hypothetical protein compare
BPHYT_RS33950 -1.3 -7.2 GntR family transcriptional regulator compare
BPHYT_RS29085 -1.3 -1.5 LysR family transcriptional regulator compare
BPHYT_RS10040 -1.3 -0.8 hypothetical protein compare
BPHYT_RS27145 -1.3 -2.4 TetR family transcriptional regulator compare
BPHYT_RS08765 -1.3 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS10540 -1.3 -0.9 secretion protein compare
BPHYT_RS33610 -1.3 -0.8 DNA polymerase I compare
BPHYT_RS14865 -1.3 -1.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS28860 -1.3 -1.0 haloacid dehalogenase compare
BPHYT_RS36385 -1.3 -0.9 TetR family transcriptional regulator compare
BPHYT_RS02815 -1.3 -3.3 methyltransferase compare
BPHYT_RS11155 -1.3 -1.1 hypothetical protein compare
BPHYT_RS27450 -1.2 -2.0 alpha/beta hydrolase compare
BPHYT_RS04890 -1.2 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS35735 -1.2 -1.3 nitroreductase compare
BPHYT_RS29235 -1.2 -0.9 cell shape determination protein CcmA compare
BPHYT_RS01485 -1.2 -0.9 histidine kinase compare
BPHYT_RS16340 -1.2 -4.9 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16710 -1.2 -1.1 LysR family transcriptional regulator compare
BPHYT_RS23455 -1.2 -1.0 phosphorylase compare
BPHYT_RS25410 -1.2 -2.3 porin compare
BPHYT_RS27370 -1.2 -1.7 CoA transferase compare
BPHYT_RS21860 -1.2 -1.1 hypothetical protein compare
BPHYT_RS07580 -1.1 -2.4 N-formimino-L-glutamate deiminase compare
BPHYT_RS33980 -1.1 -5.5 aconitate hydratase compare
BPHYT_RS19435 -1.1 -1.4 16S rRNA methyltransferase compare
BPHYT_RS08360 -1.1 -1.8 LysR family transcriptional regulator compare
BPHYT_RS22400 -1.1 -1.2 hypothetical protein compare
BPHYT_RS26030 -1.1 -1.8 cysteine hydrolase compare
BPHYT_RS25020 -1.1 -1.4 phospholipid-binding protein compare
BPHYT_RS33370 -1.1 -1.2 LysR family transcriptional regulator compare
BPHYT_RS04290 -1.1 -0.9 glycosyl transferase family 2 compare
BPHYT_RS20240 -1.1 -2.0 iron reductase compare
BPHYT_RS16175 -1.1 -1.5 hemolysin D compare
BPHYT_RS18635 -1.1 -1.3 LamB/YcsF family protein compare
BPHYT_RS13935 -1.1 -1.5 mannosyltransferase compare
BPHYT_RS36355 -1.1 -1.6 hypothetical protein compare
BPHYT_RS00150 -1.1 -1.9 DEAD/DEAH box helicase compare
BPHYT_RS17075 -1.1 -1.8 ABC transporter permease compare
BPHYT_RS24175 -1.1 -2.2 C4-dicarboxylate ABC transporter compare
BPHYT_RS16880 -1.0 -1.3 malic enzyme compare
BPHYT_RS09280 -1.0 -0.8 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS03330 -1.0 -2.2 hypothetical protein compare
BPHYT_RS01955 -1.0 -3.0 hypothetical protein compare
BPHYT_RS27850 -1.0 -1.2 hemerythrin compare
BPHYT_RS28575 -1.0 -0.9 transcriptional regulator compare
BPHYT_RS22265 -1.0 -0.6 hypothetical protein compare
BPHYT_RS22470 -1.0 -1.1 hydrolase compare
BPHYT_RS03755 -1.0 -1.5 pilus assembly protein PilE compare
BPHYT_RS35400 -1.0 -1.5 ABC transporter compare
BPHYT_RS30760 -1.0 -2.1 MmgE/PrpD family protein compare
BPHYT_RS16090 -1.0 -1.3 hypothetical protein compare
BPHYT_RS25935 -1.0 -2.4 type III secretion protein compare
BPHYT_RS30810 -1.0 -1.3 transcriptional regulator compare
BPHYT_RS35350 -1.0 -2.9 amidohydrolase compare
BPHYT_RS04430 -1.0 -1.1 amino acid ABC transporter ATPase compare
BPHYT_RS18255 -1.0 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS33630 -1.0 -1.6 chromate transporter compare
BPHYT_RS07570 -1.0 -1.0 hypothetical protein compare
BPHYT_RS15615 -1.0 -1.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS33580 -1.0 -2.9 geranyltranstransferase compare
BPHYT_RS23840 -1.0 -1.1 methyltransferase compare
BPHYT_RS30185 -1.0 -1.6 DNA-directed RNA polymerase subunit alpha compare
BPHYT_RS33840 -0.9 -4.5 amidophosphoribosyltransferase compare
BPHYT_RS22360 -0.9 -1.7 response regulator receiver compare
BPHYT_RS24760 -0.9 -1.5 cytochrome B561 compare
BPHYT_RS29520 -0.9 -0.7 hypothetical protein compare
BPHYT_RS06335 -0.9 -0.9 CopG family transcriptional regulator compare
BPHYT_RS02885 -0.9 -4.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS03900 -0.9 -0.7 phospholipid-binding protein compare
BPHYT_RS09155 -0.9 -3.0 3-ketoacyl-ACP reductase compare
BPHYT_RS03170 -0.9 -1.9 membrane protein compare
BPHYT_RS20935 -0.9 -2.4 dehydrogenase compare
BPHYT_RS03240 -0.9 -1.7 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS30055 -0.9 -1.5 hypothetical protein compare
BPHYT_RS35300 -0.9 -2.1 flavin reductase compare
BPHYT_RS05525 -0.9 -1.6 sensor histidine kinase compare
BPHYT_RS28300 -0.9 -1.0 histone nucleoid-structuring protein H-NS compare
BPHYT_RS04285 -0.9 -1.3 rhamnosyltransferase compare
BPHYT_RS30750 -0.9 -1.2 GntR family transcriptional regulator compare
BPHYT_RS05290 -0.9 -0.6 hypothetical protein compare
BPHYT_RS05620 -0.9 -0.9 CsbD family protein compare
BPHYT_RS07770 -0.9 -1.9 hypothetical protein compare
BPHYT_RS32240 -0.9 -0.6 chromosome replication initiation inhibitor protein compare
BPHYT_RS17640 -0.9 -1.5 2-alkenal reductase compare
BPHYT_RS13610 -0.9 -2.3 MerR family transcriptional regulator compare
BPHYT_RS22530 -0.9 -1.2 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS25870 -0.8 -0.7 type III secretion system ATPase compare
BPHYT_RS30590 -0.8 -2.4 transcriptional regulator compare
BPHYT_RS04895 -0.8 -2.1 adenosylcobinamide kinase compare
BPHYT_RS27560 -0.8 -1.1 histidine kinase compare
BPHYT_RS03445 -0.8 -3.3 cytochrome B561 compare
BPHYT_RS32495 -0.8 -1.0 ABC transporter compare
BPHYT_RS11400 -0.8 -1.4 hypothetical protein compare
BPHYT_RS02930 -0.8 -1.1 KpsF/GutQ family protein compare
BPHYT_RS04140 -0.8 -2.3 polysaccharide biosynthesis protein compare
BPHYT_RS03280 -0.8 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS05705 -0.8 -0.8 hypothetical protein compare
BPHYT_RS22355 -0.8 -0.9 HAD family hydrolase compare
BPHYT_RS33400 -0.8 -0.7 magnesium transporter CorA compare
BPHYT_RS26685 -0.8 -1.0 precorrin-8X methylmutase compare
BPHYT_RS21350 -0.8 -1.1 ADP-glucose pyrophosphorylase compare
BPHYT_RS07320 -0.8 -1.0 dihydrodipicolinate synthetase compare
BPHYT_RS29110 -0.8 -1.7 DNA-directed DNA polymerase compare
BPHYT_RS23445 -0.8 -1.2 hexuronate transporter compare
BPHYT_RS28995 -0.8 -2.2 histidine kinase compare
BPHYT_RS19785 -0.8 -1.1 chemotaxis protein CheY compare
BPHYT_RS30415 -0.8 -1.2 AraC family transcriptional regulator compare
BPHYT_RS33850 -0.8 -1.1 sporulation protein compare
BPHYT_RS28910 -0.8 -0.9 diguanylate phosphodiesterase compare
BPHYT_RS16135 -0.8 -1.9 ABC transporter ATP-binding protein compare
BPHYT_RS26435 -0.8 -0.7 hypothetical protein compare
BPHYT_RS04920 -0.8 -1.2 aspartate 1-decarboxylase compare
BPHYT_RS32730 -0.8 -1.4 histidine phosphatase compare
BPHYT_RS16130 -0.8 -2.8 cation ABC transporter substrate-binding protein compare
BPHYT_RS11555 -0.8 -1.4 allantoinase compare
BPHYT_RS03475 -0.8 -5.0 catalase compare
BPHYT_RS33230 -0.8 -2.6 amino acid permease compare
BPHYT_RS22255 -0.8 -1.6 hypothetical protein compare
BPHYT_RS20185 -0.8 -0.6 sugar transferase compare
BPHYT_RS19115 -0.8 -1.9 acyl carrier protein compare
BPHYT_RS19085 -0.8 -4.0 flagellin compare
BPHYT_RS25800 -0.8 -1.0 sugar ABC transporter permease compare
BPHYT_RS29060 -0.8 -1.9 hypothetical protein compare
BPHYT_RS22500 -0.8 -1.0 transcriptional regulator compare
BPHYT_RS16335 -0.8 -0.6 membrane protein compare
BPHYT_RS25070 -0.8 -0.8 choline ABC transporter permease compare
BPHYT_RS30790 -0.8 -1.6 porin compare
BPHYT_RS03925 -0.8 -1.2 LysR family transcriptional regulator compare
BPHYT_RS12225 -0.8 -1.6 carnitine dehydratase compare
BPHYT_RS09825 -0.8 -1.4 Fe-S protein compare
BPHYT_RS07350 -0.7 -1.4 ABC transporter ATP-binding protein compare
BPHYT_RS17875 -0.7 -2.0 hypothetical protein compare
BPHYT_RS00790 -0.7 -0.9 conjugal transfer protein TraF compare
BPHYT_RS13470 -0.7 -0.6 arylsulfate sulfotransferase compare
BPHYT_RS30820 -0.7 -1.1 GntR family transcriptional regulator compare
BPHYT_RS36435 -0.7 -1.0 hypothetical protein compare
BPHYT_RS17205 -0.7 -1.6 peroxiredoxin compare
BPHYT_RS25980 -0.7 -0.7 urea carboxylase compare
BPHYT_RS14880 -0.7 -1.5 integration host factor subunit beta compare
BPHYT_RS16740 -0.7 -3.1 transcriptional regulator compare
BPHYT_RS17520 -0.7 -1.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS12815 -0.7 -2.7 IclR family transcriptional regulator compare
BPHYT_RS21700 -0.7 -1.1 phosphotransacetylase compare
BPHYT_RS07925 -0.7 -1.3 glutamine amidotransferase compare
BPHYT_RS31515 -0.7 -1.2 agmatinase compare
BPHYT_RS05005 -0.7 -1.6 hypothetical protein compare
BPHYT_RS34410 -0.7 -0.8 hypothetical protein compare
BPHYT_RS14900 -0.7 -1.2 prephenate dehydrogenase compare
BPHYT_RS09600 -0.7 -1.3 hypothetical protein compare
BPHYT_RS10175 -0.7 -1.2 membrane protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Paraquat dichloride across organisms