Experiment set1IT032 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.0 -5.9 Probable transmembrane protein compare
Pf6N2E2_4597 -5.9 -8.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -5.9 -5.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -5.8 -4.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_4596 -5.8 -8.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_77 -5.7 -3.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_3842 -5.3 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4564 -4.9 -11.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5175 -4.7 -15.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4825 -4.7 -10.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_3782 -4.6 -5.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3252 -4.3 -8.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3610 -4.2 -7.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3253 -4.2 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5176 -4.2 -11.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_4047 -4.0 -6.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3630 -4.0 -7.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5780 -3.9 -11.7 Periplasmic protease compare
Pf6N2E2_5006 -3.9 -9.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3752 -3.8 -20.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_3841 -3.8 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3751 -3.8 -15.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4678 -3.8 -1.6 hypothetical protein compare
Pf6N2E2_64 -3.7 -5.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_5177 -3.7 -8.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_66 -3.6 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_1381 -3.6 -10.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4048 -3.6 -8.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_2756 -3.5 -9.4 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3839 -3.4 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3783 -3.3 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2574 -3.2 -2.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_4077 -3.2 -3.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_4638 -3.2 -3.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2217 -3.1 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4803 -3.0 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5156 -3.0 -2.9 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5160 -2.9 -2.5 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3062 -2.9 -4.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4611 -2.9 -5.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4752 -2.9 -12.7 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_624 -2.8 -7.3 hypothetical protein PA3071 compare
Pf6N2E2_1400 -2.8 -11.7 Sensory box histidine kinase/response regulator compare
Pf6N2E2_1401 -2.7 -9.3 FIG00955631: hypothetical protein compare
Pf6N2E2_5894 -2.7 -7.4 Putative threonine efflux protein compare
Pf6N2E2_6140 -2.7 -1.6 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2047 -2.6 -5.9 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) conserved
Pf6N2E2_3271 -2.6 -3.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3941 -2.6 -3.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3942 -2.5 -11.0 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3835 -2.5 -5.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5255 -2.5 -12.0 Outer membrane stress sensor protease DegS compare
Pf6N2E2_3932 -2.5 -5.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5579 -2.4 -8.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4372 -2.4 -5.8 FIG00460773: hypothetical protein compare
Pf6N2E2_5014 -2.4 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4279 -2.4 -10.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5899 -2.4 -8.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2052 -2.4 -9.4 ABC transporter for D-Glucosamine Hydrochloride, permease component 2 (from data) conserved
Pf6N2E2_4362 -2.3 -4.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5430 -2.3 -10.3 Transglycosylase, Slt family compare
Pf6N2E2_3170 -2.3 -6.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_2753 -2.2 -3.2 HtrA protease/chaperone protein compare
Pf6N2E2_1402 -2.2 -6.1 hypothetical protein compare
Pf6N2E2_178 -2.1 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3060 -2.1 -4.0 Outer membrane protein H precursor compare
Pf6N2E2_3940 -2.0 -8.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5536 -2.0 -2.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5219 -2.0 -7.5 FIG140336: TPR domain protein compare
Pf6N2E2_4759 -2.0 -11.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4278 -2.0 -9.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_2894 -2.0 -4.5 N-acylglucosamine 2-epimerase (EC 5.1.3.8) compare
Pf6N2E2_2053 -1.9 -7.6 ABC transporter for D-Glucosamine, periplasmic substrate-binding component (from data) conserved
Pf6N2E2_622 -1.9 -6.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2674 -1.9 -1.6 FIG00953856: hypothetical protein compare
Pf6N2E2_2051 -1.9 -7.8 ABC transporter for D-Glucosamine Hydrochloride, permease component 1 (from data) conserved
Pf6N2E2_180 -1.9 -4.3 Transcriptional regulator, MerR family compare
Pf6N2E2_3349 -1.9 -2.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_63 -1.8 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_5943 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_510 -1.8 -9.7 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf6N2E2_658 -1.7 -8.0 sensor histidine kinase compare
Pf6N2E2_1705 -1.7 -2.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4009 -1.7 -8.2 GGDEF domain protein compare
Pf6N2E2_1932 -1.6 -4.4 Transcriptional regulator, IclR family compare
Pf6N2E2_3277 -1.6 -3.1 FagA protein compare
Pf6N2E2_2752 -1.6 -8.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_620 -1.6 -7.2 BatD compare
Pf6N2E2_2074 -1.6 -2.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3984 -1.6 -8.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_621 -1.6 -6.1 TPR domain protein in aerotolerance operon compare
Pf6N2E2_623 -1.5 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_2514 -1.5 -3.7 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_1718 -1.5 -3.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_146 -1.4 -1.7 Transcriptional regulator, MarR family compare
Pf6N2E2_2055 -1.3 -2.4 StbE replicon stabilization toxin compare
Pf6N2E2_2073 -1.3 -6.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3171 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_2438 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_4059 -1.3 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_5316 -1.2 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4708 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_4478 -1.2 -5.1 FIG019278: hypothetical protein compare
Pf6N2E2_4052 -1.2 -1.6 FIG00955481: hypothetical protein compare
Pf6N2E2_546 -1.2 -1.8 FIG00966904: hypothetical protein compare
Pf6N2E2_3833 -1.2 -3.1 hypothetical protein compare
Pf6N2E2_425 -1.2 -3.0 FIG00957304: hypothetical protein compare
Pf6N2E2_6047 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5328 -1.2 -3.4 FIG00958649: hypothetical protein compare
Pf6N2E2_3613 -1.1 -6.2 GTP-binding protein HflX compare
Pf6N2E2_5073 -1.1 -3.3 Large-conductance mechanosensitive channel compare
Pf6N2E2_74 -1.1 -2.1 DedD protein compare
Pf6N2E2_5494 -1.1 -4.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_5252 -1.1 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_3021 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_4418 -1.1 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1238 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_1162 -1.1 -1.5 Transmembrane amino acid efflux protein compare
Pf6N2E2_5001 -1.0 -1.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_374 -1.0 -3.0 FIG00953249: hypothetical protein compare
Pf6N2E2_2048 -1.0 -3.0 Transcriptional regulator, IclR family compare
Pf6N2E2_5756 -1.0 -2.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4494 -1.0 -4.1 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_1424 -1.0 -1.3 transcriptional regulator, TetR family compare
Pf6N2E2_5345 -1.0 -5.4 LppC putative lipoprotein compare
Pf6N2E2_4743 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_4205 -1.0 -2.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5988 -1.0 -3.5 hypothetical protein compare
Pf6N2E2_1821 -1.0 -1.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1298 -0.9 -3.6 Xanthine transporter,putative compare
Pf6N2E2_1279 -0.9 -2.6 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_4276 -0.9 -3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1966 -0.9 -2.2 SAM-dependent methyltransferases compare
Pf6N2E2_443 -0.9 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1654 -0.9 -2.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5727 -0.9 -4.6 FIG00955360: hypothetical protein compare
Pf6N2E2_3638 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_3834 -0.9 -3.0 Lipoprotein NlpD compare
Pf6N2E2_2675 -0.9 -0.9 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_1404 -0.9 -1.4 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_302 -0.9 -3.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_248 -0.9 -4.3 hypothetical protein compare
Pf6N2E2_5766 -0.9 -0.9 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_625 -0.9 -2.6 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_2984 -0.9 -2.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_5994 -0.9 -3.9 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf6N2E2_417 -0.9 -2.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2034 -0.8 -2.0 Methyltransferase compare
Pf6N2E2_2054 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_2081 -0.8 -1.7 putative exported protein compare
Pf6N2E2_4453 -0.8 -6.7 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2893 -0.8 -3.1 hypothetical protein compare
Pf6N2E2_1323 -0.8 -1.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4624 -0.8 -0.8 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3192 -0.8 -2.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4416 -0.8 -1.4 Tyrosine recombinase XerC compare
Pf6N2E2_613 -0.8 -1.2 lipoprotein, putative compare
Pf6N2E2_4092 -0.8 -2.5 FIG00954395: hypothetical protein compare
Pf6N2E2_201 -0.8 -2.0 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
Pf6N2E2_1560 -0.8 -1.8 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_833 -0.8 -2.0 Probable Co/Zn/Cd efflux system membrane fusion protein compare
Pf6N2E2_3847 -0.8 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3632 -0.8 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_6064 -0.8 -3.3 2-methylaconitate isomerase compare
Pf6N2E2_4188 -0.8 -1.5 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_6038 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_648 -0.8 -1.3 General secretion pathway protein K compare
Pf6N2E2_5111 -0.8 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_516 -0.7 -2.5 Inosose isomerase (EC 5.3.99.-) compare
Pf6N2E2_1074 -0.7 -2.2 FIG00953356: hypothetical protein compare
Pf6N2E2_4742 -0.7 -1.1 Glutathione S-transferase family protein compare
Pf6N2E2_4152 -0.7 -4.1 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_813 -0.7 -1.9 Response regulator compare
Pf6N2E2_3285 -0.7 -2.5 Rod shape-determining protein MreD compare
Pf6N2E2_4674 -0.7 -2.6 Permeases of the major facilitator superfamily compare
Pf6N2E2_4392 -0.7 -1.7 Translation initiation inhibitor compare
Pf6N2E2_517 -0.7 -4.3 Epi-inositol hydrolase (EC 3.7.1.-) (from data) compare
Pf6N2E2_2106 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_1735 -0.7 -0.9 PhnB protein compare
Pf6N2E2_5816 -0.7 -0.8 Smr domain protein compare
Pf6N2E2_818 -0.7 -2.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_3692 -0.7 -5.1 Selenoprotein O and cysteine-containing homologs compare
Pf6N2E2_4480 -0.7 -5.0 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Pf6N2E2_5331 -0.7 -3.4 ATPase, AFG1 family compare
Pf6N2E2_5062 -0.7 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf6N2E2_682 -0.7 -2.6 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_1663 -0.7 -3.3 2-keto-3-deoxy-L-fuconate dehydrogenase compare
Pf6N2E2_4928 -0.7 -0.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_5877 -0.7 -1.5 Phosphohistidine phosphatase SixA compare
Pf6N2E2_2885 -0.7 -2.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_2895 -0.7 -3.7 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf6N2E2_2072 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3132 -0.7 -2.4 FIG00954548: hypothetical protein compare
Pf6N2E2_2442 -0.7 -4.4 sensor histidine kinase/response regulator compare
Pf6N2E2_3719 -0.7 -3.2 FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein compare
Pf6N2E2_5341 -0.7 -2.8 Stringent starvation protein B compare
Pf6N2E2_2507 -0.7 -3.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2746 -0.7 -2.6 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_1126 -0.7 -1.8 Two-component system regulatory protein compare
Pf6N2E2_4067 -0.7 -3.7 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Glucosamine Hydrochloride across organisms