Experiment set1IT032 for Sinorhizobium meliloti 1021

Compare to:

Uridine carbon source

200 most important genes:

  gene name fitness t score description  
SMc02766 -8.4 -12.9 tryptophan synthase subunit beta compare
SMc00917 -8.1 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02899 -8.0 -11.0 prephenate dehydratase compare
SMc01801 -7.9 -5.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01494 -7.6 -14.6 phosphoserine phosphatase compare
SMc00493 -7.4 -5.1 phosphoribosylformylglycinamidine synthase I compare
SMc01431 -7.3 -10.0 acetolactate synthase 3 catalytic subunit compare
SMc03797 -7.3 -11.2 homoserine O-succinyltransferase compare
SMc02767 -7.3 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01843 -7.3 -14.8 5,10-methylenetetrahydrofolate reductase compare
SMc00236 -7.2 -7.1 Indole-3-glycerol phosphate synthase compare
SMc03777 -7.2 -7.0 gamma-glutamyl phosphate reductase compare
SMc03823 -7.0 -14.3 isopropylmalate isomerase large subunit compare
SMc00711 -7.0 -6.9 cyclohexadienyl dehydrogenase compare
SMc04405 -7.0 -11.7 3-isopropylmalate dehydrogenase compare
SMc00235 -6.9 -8.2 anthranilate phosphoribosyltransferase compare
SMc00614 -6.9 -8.2 phosphoribosylglycinamide formyltransferase compare
SMc00640 -6.8 -10.4 phosphoserine aminotransferase compare
SMc00918 -6.7 -11.3 ATP phosphoribosyltransferase regulatory subunit compare
SMa1635 -6.7 -2.5 hypothetical protein compare
SMc02717 -6.7 -15.6 2-isopropylmalate synthase compare
SMc02569 -6.7 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc03776 -6.6 -4.6 gamma-glutamyl kinase compare
SMc04045 -6.6 -9.0 dihydroxy-acid dehydratase compare
SMc01726 -6.5 -6.6 acetylglutamate kinase compare
SMc00495 -6.5 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03112 -6.4 -19.4 B12-dependent methionine synthase compare
SMc02725 -6.4 -13.6 anthranilate synthase compare
SMc02765 -6.3 -11.7 tryptophan synthase subunit alpha compare
SMc03826 -6.3 -4.3 argininosuccinate synthase compare
SMc02217 -6.2 -8.5 O-succinylhomoserine sulfhydrylase compare
SMc00993 -6.2 -12.6 phosphoribosylamine--glycine ligase compare
SMc01004 -6.1 -9.8 phosphoribosyl-AMP cyclohydrolase compare
SMc00293 -6.0 -11.8 homoserine dehydrogenase compare
SMc02755 -6.0 -7.1 S-adenosyl-L-homocysteine hydrolase compare
SMc04028 -6.0 -22.0 glutamate synthase compare
SMc00615 -5.9 -8.9 phosphoribosylaminoimidazole synthetase compare
SMc02137 -5.8 -6.9 ornithine carbamoyltransferase compare
SMc02572 -5.6 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc00554 -5.5 -11.3 amidophosphoribosyltransferase compare
SMc03895 -5.5 -22.1 pyruvate carboxylase compare
SMc04002 -5.5 -7.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc03979 -5.5 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00488 -5.4 -17.4 phosphoribosylformylglycinamidine synthase II compare
SMc01881 -5.4 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01103 -5.3 -6.0 Ribokinase (EC 2.7.1.15) (from data) conserved
SMc04088 -5.2 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03763 -5.2 -3.6 cytosine-specific methyltransferase compare
SMc03978 -5.1 -3.5 transketolase compare
SMc02570 -5.0 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc04026 -5.0 -9.0 glutamate synthase compare
SMc01215 -5.0 -3.4 carbamoyl phosphate synthase large subunit compare
SMc01569 -4.9 -2.5 carbamoyl phosphate synthase small subunit compare
SMc00131 -4.7 -19.4 transcriptional regulator compare
SMc02172 -4.6 -10.2 transcriptional regulator compare
SMc01770 -4.5 -2.0 serine hydroxymethyltransferase compare
SMc00494 -4.5 -2.9 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02707 -4.5 -7.1 hypothetical protein compare
SMc00511 -4.5 -9.1 D-ribulose-5-phosphate 3-epimerase compare
SMc02425 -4.4 -5.8 transcriptional regulator compare
SMc03795 -4.4 -2.3 isopropylmalate isomerase small subunit compare
SMc01880 -4.3 -5.1 pantoate--beta-alanine ligase compare
SMc00815 -4.3 -2.9 inosine 5'-monophosphate dehydrogenase compare
SMc02307 -4.2 -10.8 histidinol dehydrogenase compare
SMc03229 -4.1 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02124 -3.9 -14.1 nitrite reductase compare
SMc02640 -3.9 -7.5 UDP-glucuronic acid epimerase compare
SM_b21175 -3.9 -7.6 phosphate uptake ABC transporter permease compare
SMc03070 -3.8 -10.5 glucose-6-phosphate 1-dehydrogenase compare
SMc02123 -3.7 -6.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00092 -3.7 -11.1 phosphoadenosine phosphosulfate reductase compare
SM_b21177 -3.6 -9.7 phosphate uptake ABC transporter ATP-binding protein compare
SMc04346 -3.6 -4.7 ketol-acid reductoisomerase compare
SMc01053 -3.5 -5.6 siroheme synthase compare
SMc02138 -3.4 -7.5 acetylornithine transaminase compare
SMc00641 -3.3 -5.0 D-3-phosphoglycerate dehydrogenase compare
SMc00090 -3.2 -9.2 sulfate adenylyltransferase compare
SMc00091 -3.1 -12.3 sulfate adenylyltransferase compare
SMc04001 -3.0 -1.6 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00017 -3.0 -2.6 homoserine kinase compare
SMc00876 -3.0 -8.2 ATP-binding MRP protein compare
SMc02407 -3.0 -9.4 hypothetical protein compare
SMc03850 -3.0 -2.1 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SM_b21174 -2.9 -5.0 phosphate uptake ABC transporter permease compare
SMc01430 -2.7 -5.9 acetolactate synthase 3 regulatory subunit compare
SMc01054 -2.6 -4.4 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00781 -2.4 -7.3 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) conserved
SMc00450 -2.3 -3.1 protoheme IX farnesyltransferase compare
SMc01206 -2.2 -2.7 queuine tRNA-ribosyltransferase compare
SMc04005 -2.2 -7.3 pyruvate kinase compare
SMc02171 -2.1 -6.2 periplasmic binding ABC transporter protein compare
SM_b21176 -2.1 -4.7 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02724 -1.9 -5.0 hypothetical protein compare
SMc03100 -1.9 -1.7 hypothetical protein compare
SMc00492 -1.8 -1.5 hypothetical protein compare
SMc01105 -1.8 -7.2 uridine nucleosidase (EC 3.2.2.3) (from data) conserved
SMc00619 -1.8 -2.1 hypothetical protein compare
SMc02558 -1.8 -5.0 hypothetical protein compare
SMc01207 -1.8 -2.9 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc03981 -1.8 -6.0 phosphoglycerate kinase compare
SMc01842 -1.8 -1.9 methyltransferase transcription regulator protein compare
SMc01124 -1.8 -6.1 PII uridylyl-transferase compare
SMc02574 -1.8 -3.4 imidazoleglycerol-phosphate dehydratase compare
SMc00726 -1.7 -1.2 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01850 -1.6 -4.0 hypothetical protein compare
SMc02170 -1.6 -6.7 ABC transporter permease compare
SMc02169 -1.6 -2.5 ABC transporter ATP-binding protein compare
SMc02112 -1.6 -6.4 hypothetical protein compare
SMa0789 -1.5 -2.9 GntR family transcriptional regulator compare
SMc02050 -1.5 -2.9 trigger factor compare
SMc02225 -1.5 -3.6 hypothetical protein compare
SMc02434 -1.5 -3.8 hypothetical protein compare
SMc01845 -1.5 -2.2 transglycosylase transmembrane protein compare
SM_b21270 -1.5 -4.2 transcriptional regulator compare
SMc00838 -1.5 -6.5 hypothetical protein compare
SMc00414 -1.5 -8.2 hypothetical protein compare
SMc02308 -1.5 -2.2 hypothetical protein compare
SMa2020 -1.4 -7.0 Transcriptional regulator compare
SMc00295 -1.4 -1.5 hypothetical protein compare
SMc02115 -1.4 -1.1 hypothetical protein compare
SMc00963 -1.3 -4.5 hypothetical protein compare
SMc04127 -1.3 -6.6 ABC transporter ATP-binding protein compare
SMc02641 -1.3 -5.2 UDP-glucose 6-dehydrogenase compare
SMc01578 -1.3 -8.9 aspartate aminotransferase compare
SMc00877 -1.3 -8.8 transcriptional regulator compare
SMc03993 -1.2 -4.7 hypothetical protein compare
SMc01438 -1.2 -4.0 protease precursor signal peptide protein compare
SMc03046 -1.2 -3.6 transcriptional regulator compare
SMc00982 -1.2 -5.7 dioxygenase compare
SMc00294 -1.2 -3.6 aminotransferase compare
SMc01119 -1.2 -2.0 hypothetical protein compare
SMc02227 -1.2 -5.0 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc04126 -1.2 -7.5 ABC transporter permease compare
SMc02884 -1.1 -6.1 lipoprotein compare
SMc03974 -1.1 -3.7 hypothetical protein compare
SMc01723 -1.1 -2.2 hypothetical protein compare
SMc00025 -1.1 -3.7 pyruvate phosphate dikinase compare
SMc02228 -1.1 -4.7 acetyl-CoA acetyltransferase compare
SMc02384 -1.1 -4.8 glycosyltransferase transmembrane protein compare
SMc01441 -1.1 -3.8 membrane bound protease compare
SM_b20323 -1.1 -1.1 transcriptional regulator compare
SMc02861 -1.0 -1.8 phosphate transporter compare
SMc01440 -1.0 -3.2 hydrolase serine protease transmembrane protein compare
SMc01187 -1.0 -1.6 rare lipoprotein A compare
SMc04000 -1.0 -0.7 hypothetical protein compare
SMc04243 -1.0 -5.1 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc01820 -1.0 -4.3 Beta-ureidopropionase (EC 3.5.1.6) (from data) compare
SMc02690 -0.9 -2.4 hypothetical protein compare
SMc03069 -0.9 -1.8 6-phosphogluconolactonase compare
SMc02983 -0.9 -4.5 ornithine, DAP, or arginine decarboxylase compare
SMc04245 -0.9 -6.7 high-affinity zinc uptake system ABC transporter protein compare
SMc02689 -0.9 -6.1 aldehyde dehydrogenase compare
SMa1442 -0.9 -3.5 GntR family transcriptional regulator compare
SMc01174 -0.9 -6.0 cysteine synthase A compare
SMc00588 -0.9 -1.6 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SMa0325 -0.9 -2.2 hypothetical protein compare
SM_b21210 -0.9 -3.1 two-component response regulator protein compare
SMc02909 -0.9 -1.4 transglycosylase transmembrane protein compare
SMc01501 -0.9 -2.9 mannitol 2-dehydrogenase compare
SMc00088 -0.9 -1.6 hypothetical protein compare
SM_b20105 -0.9 -1.5 transcriptional regulator compare
SMc04244 -0.9 -3.6 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc01568 -0.9 -1.4 hypothetical protein compare
SMc02147 -0.9 -4.4 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc03258 -0.9 -4.8 transcriptional regulator compare
SMc02229 -0.9 -5.5 acyl-CoA dehydrogenase compare
SMc01814 -0.9 -4.8 oxidoreductase compare
SMc01573 -0.9 -1.9 hypothetical protein compare
SMc00709 -0.9 -2.7 hypothetical protein compare
SMc01815 -0.8 -6.0 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
SMc01622 -0.8 -2.9 oxidoreductase compare
SMc02362 -0.8 -2.6 cytochrome c-type biogenesis protein CcmE compare
SM_b21112 -0.8 -3.7 L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase (from data) compare
SMc04330 -0.8 -2.3 trimethylamine methyltransferase compare
SMc02049 -0.8 -6.7 glycine dehydrogenase compare
SMc02833 -0.8 -2.0 penicillin-insensitive murein endopeptidase compare
SMc02812 -0.8 -1.6 hypothetical protein compare
SM_b20509 -0.8 -1.3 transcriptional regulator compare
SMc01164 -0.8 -5.6 hypothetical protein compare
SMc02048 -0.8 -4.2 glycine cleavage system protein H compare
SMc02451 -0.8 -1.7 hypothetical protein compare
SMc00650 -0.8 -1.7 hypothetical protein compare
SMc00012 -0.8 -1.1 cytochrome C oxidase assembly protein compare
SMc00451 -0.8 -4.5 processing protease compare
SMc00349 -0.8 -4.3 GTP-binding protein LepA compare
SMc02068 -0.8 -5.5 ABC transporter ATP-binding protein compare
SMc04042 -0.8 -4.2 monophosphatase compare
SMc00353 -0.8 -1.2 transmembrane protein compare
SMa1279 -0.8 -1.5 NorE accessory protein for nitric oxide reductase compare
SMc00622 -0.8 -3.6 ribonuclease D protein compare
SMc01821 -0.8 -5.0 Dihydropyrimidinase (EC 3.5.2.2) (from data) compare
SMc01147 -0.8 -1.4 coproporphyrinogen III oxidase compare
SMc04125 -0.7 -3.8 ABC transporter permease compare
SMa0909 -0.7 -2.2 hypothetical protein compare
SMc01342 -0.7 -3.0 hypothetical protein compare
SMc02260 -0.7 -1.8 ABC transporter ATP-binding protein compare
SMc00006 -0.7 -1.7 hypothetical protein compare
SMc03116 -0.7 -4.5 alcohol dehydrogenase compare
SMa0112 -0.7 -2.4 hypothetical protein compare
SMc00334 -0.7 -1.5 cytidylate kinase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Uridine in Sinorhizobium meliloti 1021

For carbon source Uridine across organisms