Experiment set1IT031 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 Vitamin & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04485 -5.4 -6.4 riboflavin synthase compare
MMJJ_RS02035 -5.2 -4.0 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS02985 -4.9 -18.5 MBL fold metallo-hydrolase compare
MMJJ_RS00235 -4.9 -21.3 hypothetical protein compare
MMJJ_RS03800 -4.5 -12.4 aldolase compare
MMJJ_RS03170 -4.4 -7.4 DUF5612 domain-containing protein compare
MMJJ_RS06600 -4.4 -1.4 DUF555 domain-containing protein compare
MMJJ_RS09095 -4.2 -5.7 MMPL family transporter compare
MMJJ_RS06260 -4.2 -6.2 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS01810 -4.2 -1.0 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS08655 -4.1 -14.2 phospholipase D-like domain-containing protein compare
MMJJ_RS00580 -4.1 -1.0 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS00645 -4.1 -9.0 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS03065 -4.0 -14.3 CBS domain-containing protein compare
MMJJ_RS06270 -4.0 -2.6 dethiobiotin synthase compare
MMJJ_RS06265 -3.8 -11.0 8-amino-7-oxononanoate synthase compare
MMJJ_RS00275 -3.8 -1.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS00425 -3.8 -2.6 hypothetical protein compare
MMJJ_RS00450 -3.8 -1.1 DUF126 domain-containing protein compare
MMJJ_RS05445 -3.8 -1.1 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS01960 -3.8 -4.7 glycosyltransferase family 2 protein compare
MMJJ_RS03620 -3.7 -2.0 DUF2097 domain-containing protein compare
MMJJ_RS03895 -3.7 -1.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS09055 -3.7 -10.1 NFACT family protein compare
MMJJ_RS07005 -3.6 -5.5 transcription factor S compare
MMJJ_RS07980 -3.6 -11.6 biotin synthase BioB compare
MMJJ_RS04050 -3.6 -0.9 dihydroneopterin aldolase family protein compare
MMJJ_RS07245 -3.6 -2.0 amidohydrolase family protein compare
MMJJ_RS08035 -3.6 -6.0 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMJJ_RS04200 -3.6 -3.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS08080 -3.6 -7.5 TIGR00300 family protein compare
MMJJ_RS03490 -3.6 -1.7 ribonuclease VapC compare
MMJJ_RS06510 -3.5 -1.2 LL-diaminopimelate aminotransferase compare
MMJJ_RS02200 -3.5 -4.8 chorismate pyruvate-lyase family protein compare
MMJJ_RS04595 -3.5 -3.1 hypothetical protein compare
MMJJ_RS01070 -3.5 -2.1 PadR family transcriptional regulator compare
MMJJ_RS04475 -3.5 -3.3 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03630 -3.5 -14.5 AMP phosphorylase compare
MMJJ_RS03155 -3.5 -10.3 hypothetical protein compare
MMJJ_RS07380 -3.4 -6.1 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS04760 -3.4 -16.3 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMJJ_RS04800 -3.4 -2.0 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01750 -3.4 -1.1 ferrous iron transport protein A compare
MMJJ_RS05595 -3.4 -1.6 hypothetical protein compare
MMJJ_RS05450 -3.3 -15.5 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS03650 -3.3 -6.1 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS07425 -3.3 -9.4 MBL fold metallo-hydrolase compare
MMJJ_RS00205 -3.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS08535 -3.3 -1.3 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08010 -3.3 -6.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS06930 -3.3 -1.1 type II methionyl aminopeptidase compare
MMJJ_RS03580 -3.3 -1.3 TIGR00303 family protein compare
MMJJ_RS01350 -3.3 -4.3 sodium:proton antiporter compare
MMJJ_RS08020 -3.3 -9.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS05575 -3.3 -2.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS07350 -3.2 -1.3 4Fe-4S binding protein compare
MMJJ_RS07470 -3.2 -0.9 50S ribosome-binding GTPase compare
MMJJ_RS04145 -3.2 -8.1 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS08625 -3.2 -2.2 magnesium/cobalt transporter CorA compare
MMJJ_RS03060 -3.2 -1.6 methanogenesis marker 7 protein compare
MMJJ_RS07720 -3.2 -0.9 UPF0058 family protein compare
MMJJ_RS03225 -3.2 -1.1 4Fe-4S binding protein compare
MMJJ_RS03125 -3.2 -2.8 GMC oxidoreductase compare
MMJJ_RS06700 -3.2 -3.2 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07955 -3.1 -9.1 ThiF family adenylyltransferase compare
MMJJ_RS04755 -3.1 -10.6 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMJJ_RS03765 -3.1 -6.9 hypothetical protein compare
MMJJ_RS01935 -3.1 -2.3 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS01345 -3.1 -3.3 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03965 -3.1 -0.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS03245 -3.1 -0.8 UMP kinase compare
MMJJ_RS00285 -3.1 -13.2 UPF0254 family protein compare
MMJJ_RS05360 -3.1 -6.5 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS04650 -3.0 -2.7 nitrogenase iron protein compare
MMJJ_RS00415 -3.0 -6.6 DedA family protein compare
MMJJ_RS07585 -3.0 -8.6 DHH family phosphoesterase compare
MMJJ_RS06375 -3.0 -1.8 UbiX family flavin prenyltransferase compare
MMJJ_RS03230 -3.0 -2.6 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS06155 -3.0 -3.4 phosphatidylglycerophosphatase A compare
MMJJ_RS03200 -3.0 -0.9 uroporphyrinogen-III synthase compare
MMJJ_RS03150 -3.0 -4.2 2-phospho-L-lactate transferase compare
MMJJ_RS04685 -3.0 -6.3 carbamoyltransferase HypF compare
MMJJ_RS02855 -3.0 -7.7 DEAD/DEAH box helicase compare
MMJJ_RS03585 -3.0 -0.8 methanogenesis marker 6 protein compare
MMJJ_RS02920 -3.0 -1.1 30S ribosomal protein S27ae compare
MMJJ_RS00355 -3.0 -1.1 ribonuclease P protein component 4 compare
MMJJ_RS03270 -3.0 -0.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS07485 -2.9 -8.8 DedA family protein compare
MMJJ_RS05535 -2.9 -13.0 hypothetical protein compare
MMJJ_RS07675 -2.9 -14.8 ADP-specific phosphofructokinase compare
MMJJ_RS05155 -2.9 -4.9 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS08095 -2.9 -2.0 cobyric acid synthase CobQ compare
MMJJ_RS03865 -2.9 -0.7 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS05765 -2.9 -0.6 flagellar protein E compare
MMJJ_RS00995 -2.9 -6.6 TetR/AcrR family transcriptional regulator compare
MMJJ_RS06490 -2.9 -1.1 methanogenesis marker 2 protein compare
MMJJ_RS08840 -2.8 -2.4 calcium/sodium antiporter compare
MMJJ_RS09375 -2.8 -0.7 hypothetical protein compare
MMJJ_RS04700 -2.8 -3.9 deoxyhypusine synthase compare
MMJJ_RS05065 -2.8 -2.4 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08470 -2.8 -1.9 ferredoxin family protein compare
MMJJ_RS03055 -2.8 -1.5 hypothetical protein compare
MMJJ_RS02090 -2.8 -2.5 tyramine--L-glutamate ligase compare
MMJJ_RS08130 -2.8 -0.6 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS08870 -2.8 -0.6 2-isopropylmalate synthase compare
MMJJ_RS04005 -2.8 -13.5 acetate--CoA ligase family protein compare
MMJJ_RS05770 -2.7 -1.2 flagellar protein D compare
MMJJ_RS02045 -2.7 -1.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS04520 -2.7 -2.9 coenzyme F430 synthase compare
MMJJ_RS05780 -2.7 -1.1 flagellin compare
MMJJ_RS00570 -2.7 -0.6 ribonuclease P compare
MMJJ_RS06240 -2.7 -1.6 dihydropteroate synthase-like protein compare
MMJJ_RS08330 -2.7 -1.5 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07160 -2.7 -15.4 M20 family metallo-hydrolase compare
MMJJ_RS01880 -2.7 -1.0 RlmE family RNA methyltransferase compare
MMJJ_RS00560 -2.7 -1.6 homoisocitrate dehydrogenase compare
MMJJ_RS01410 -2.7 -4.5 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS08170 -2.7 -1.5 diaminopimelate decarboxylase compare
MMJJ_RS06715 -2.7 -10.1 lactaldehyde dehydrogenase compare
MMJJ_RS04750 -2.7 -6.9 5,10-methenyltetrahydromethanopterin hydrogenase compare
MMJJ_RS03005 -2.7 -1.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04675 -2.7 -4.6 thiamine pyrophosphate-binding protein compare
MMJJ_RS04155 -2.7 -4.2 hypothetical protein compare
MMJJ_RS01765 -2.6 -9.7 winged helix-turn-helix domain-containing protein compare
MMJJ_RS08250 -2.6 -4.3 hydrogenase maturation peptidase HycI compare
MMJJ_RS00125 -2.6 -1.3 KEOPS complex subunit Cgi121 compare
MMJJ_RS03310 -2.6 -1.1 hypothetical protein compare
MMJJ_RS06040 -2.6 -1.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03875 -2.6 -1.8 CBS domain-containing protein compare
MMJJ_RS06730 -2.6 -5.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS06220 -2.5 -2.6 polyamine aminopropyltransferase compare
MMJJ_RS01600 -2.5 -0.9 radical SAM protein compare
MMJJ_RS03760 -2.5 -1.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS03670 -2.5 -2.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS04980 -2.5 -2.4 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07455 -2.5 -2.7 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS04995 -2.5 -2.5 Tfx family DNA-binding protein compare
MMJJ_RS05950 -2.5 -1.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS08320 -2.5 -0.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07630 -2.5 -11.2 hypothetical protein compare
MMJJ_RS06875 -2.5 -1.1 hypothetical protein compare
MMJJ_RS03110 -2.5 -2.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00270 -2.5 -1.0 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS02275 -2.4 -1.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08715 -2.4 -6.0 NAD-dependent epimerase/dehydratase family protein compare
MMJJ_RS08925 -2.4 -10.6 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06000 -2.4 -2.5 cation:proton antiporter subunit C compare
MMJJ_RS06395 -2.4 -7.6 sugar phosphate isomerase/epimerase compare
MMJJ_RS09100 -2.4 -5.8 COG1361 S-layer family protein compare
MMJJ_RS05070 -2.4 -0.7 DNA primase catalytic subunit PriS compare
MMJJ_RS06180 -2.4 -0.9 tryptophan--tRNA ligase compare
MMJJ_RS08430 -2.4 -4.7 small nuclear ribonucleoprotein compare
MMJJ_RS08155 -2.3 -2.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06695 -2.3 -0.9 amidohydrolase compare
MMJJ_RS04970 -2.3 -0.6 DUF655 domain-containing protein compare
MMJJ_RS06940 -2.3 -6.8 metalloregulator ArsR/SmtB family transcription factor compare
MMJJ_RS03845 -2.3 -3.8 translation initiation factor IF-2 compare
MMJJ_RS06725 -2.3 -10.2 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03190 -2.3 -0.9 phosphopyruvate hydratase compare
MMJJ_RS04010 -2.3 -4.8 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS06855 -2.3 -0.9 DUF2104 domain-containing protein compare
MMJJ_RS06175 -2.3 -1.2 DUF1743 domain-containing protein compare
MMJJ_RS01360 -2.3 -0.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06010 -2.2 -3.9 hypothetical protein compare
MMJJ_RS09175 -2.2 -0.4 anthranilate synthase component I compare
MMJJ_RS06805 -2.2 -1.1 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS07950 -2.2 -1.3 4Fe-4S binding protein compare
MMJJ_RS00345 -2.2 -9.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS07410 -2.2 -1.7 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08850 -2.2 -0.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS00370 -2.2 -1.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07360 -2.2 -0.5 TIGR00269 family protein compare
MMJJ_RS01990 -2.2 -6.5 universal stress protein compare
MMJJ_RS08000 -2.2 -8.2 HesA/MoeB/ThiF family protein compare
MMJJ_RS03660 -2.2 -1.7 DUF447 family protein compare
MMJJ_RS06860 -2.2 -2.4 hypothetical protein compare
MMJJ_RS03880 -2.2 -11.4 TraB/GumN family protein compare
MMJJ_RS06705 -2.2 -1.2 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS07430 -2.2 -2.2 ribonuclease VapC compare
MMJJ_RS03095 -2.2 -0.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08765 -2.2 -11.2 glycosyltransferase family 9 protein compare
MMJJ_RS08615 -2.1 -7.6 oligosaccharide repeat unit polymerase family protein compare
MMJJ_RS05165 -2.1 -5.8 class I SAM-dependent methyltransferase compare
MMJJ_RS06625 -2.1 -0.6 pyruvate synthase subunit PorB compare
MMJJ_RS05490 -2.1 -0.8 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08575 -2.1 -2.7 hypothetical protein compare
MMJJ_RS06485 -2.1 -1.5 phosphoglycerate kinase compare
MMJJ_RS04975 -2.1 -0.6 glycosyltransferase family 4 protein compare
MMJJ_RS05300 -2.1 -14.1 potassium channel protein compare
MMJJ_RS07190 -2.1 -1.0 RtcB family protein compare
MMJJ_RS07750 -2.1 -2.4 class III signal peptide-containing protein compare
MMJJ_RS07680 -2.1 -9.2 glucose-6-phosphate isomerase compare
MMJJ_RS08230 -2.1 -1.5 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS03615 -2.1 -1.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS08340 -2.1 -3.4 archaeoflavoprotein AfpA compare
MMJJ_RS06840 -2.1 -1.0 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07280 -2.0 -5.6 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS07265 -2.0 -10.2 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS05295 -2.0 -9.6 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS00210 -2.0 -0.6 DUF530 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For nutrient t2 Sodium acetate in Methanococcus maripaludis JJ

For nutrient t2 Sodium acetate across organisms