Experiment set1IT031 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Choline chloride 40 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0685 +1.4 4.1 pyruvate kinase compare
Ga0059261_0208 +1.4 5.3 Response regulator receiver domain compare
Ga0059261_3579 +1.2 7.0 hypothetical protein compare
Ga0059261_3490 +1.2 8.8 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_3947 +0.8 2.8 type II secretion system protein I (GspI) compare
Ga0059261_0816 +0.8 3.2 hypothetical protein compare
Ga0059261_3492 +0.8 4.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_4122 +0.8 2.1 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_3581 +0.7 4.2 Alpha/beta hydrolase family compare
Ga0059261_1830 +0.7 1.7 hypothetical protein compare
Ga0059261_0757 +0.7 2.3 Predicted transcriptional regulators compare
Ga0059261_3335 +0.7 2.4 hypothetical protein compare
Ga0059261_2413 +0.6 1.8 hypothetical protein compare
Ga0059261_2188 +0.6 2.4 Uncharacterized conserved protein compare
Ga0059261_3604 +0.6 2.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_3507 +0.6 4.7 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_1292 +0.5 2.0 hypothetical protein compare
Ga0059261_2086 +0.5 1.2 SAF-like compare
Ga0059261_3210 +0.5 1.6 Organic radical activating enzymes compare
Ga0059261_2471 +0.5 1.3 hypothetical protein compare
Ga0059261_2774 +0.5 1.6 Transcription elongation factor compare
Ga0059261_1574 +0.5 1.6 Superfamily II DNA and RNA helicases compare
Ga0059261_1368 +0.5 1.9 hypothetical protein compare
Ga0059261_0304 +0.5 1.1 Bacterioferritin-associated ferredoxin compare
Ga0059261_2730 +0.5 1.1 Sortase and related acyltransferases compare
Ga0059261_3287 +0.5 3.8 Topoisomerase IB compare
Ga0059261_1904 +0.5 1.5 Asparaginase compare
Ga0059261_1318 +0.5 2.0 Uncharacterized MobA-related protein compare
Ga0059261_1799 +0.5 1.7 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_3556 +0.5 1.6 transcriptional regulator, TetR family compare
Ga0059261_1163 +0.5 2.2 Copper chaperone compare
Ga0059261_3168 +0.5 2.3 peroxiredoxin, OsmC subfamily compare
Ga0059261_3222 +0.4 2.8 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Ga0059261_3441 +0.4 2.2 hypothetical protein compare
Ga0059261_1860 +0.4 0.9 Transposase compare
Ga0059261_4240 +0.4 2.2 hypothetical protein compare
Ga0059261_0056 +0.4 2.2 Predicted transcriptional regulator compare
Ga0059261_2951 +0.4 1.1 Heavy-metal resistance compare
Ga0059261_2314 +0.4 1.7 Protein-disulfide isomerase compare
Ga0059261_0963 +0.4 1.9 hypothetical protein compare
Ga0059261_0993 +0.4 0.9 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_0675 +0.4 2.2 hypothetical protein compare
Ga0059261_0725 +0.4 1.3 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_0153 +0.4 1.4 Serine acetyltransferase compare
Ga0059261_3675 +0.4 1.8 Methyl-accepting chemotaxis protein compare
Ga0059261_1958 +0.4 1.8 Transcriptional regulators compare
Ga0059261_0199 +0.4 2.1 hypothetical protein compare
Ga0059261_1811 +0.4 1.1 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_3491 +0.4 2.3 hypothetical protein compare
Ga0059261_1597 +0.4 2.4 hypothetical protein compare
Ga0059261_1577 +0.4 3.3 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_0050 +0.4 2.1 Predicted membrane protein compare
Ga0059261_1756 +0.4 1.2 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_3356 +0.4 0.8 hypothetical protein compare
Ga0059261_3971 +0.4 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_2763 +0.4 1.5 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_2547 +0.4 0.7 tRNA compare
Ga0059261_0161 +0.4 1.2 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_2063 +0.4 1.3 Flagellar biosynthesis protein, FliO compare
Ga0059261_3016 +0.4 1.0 hypothetical protein compare
Ga0059261_1181 +0.4 1.2 hypothetical protein compare
Ga0059261_3165 +0.4 2.4 PEP phosphonomutase and related enzymes compare
Ga0059261_0087 +0.4 0.9 hypothetical protein compare
Ga0059261_3773 +0.4 2.6 hypothetical protein compare
Ga0059261_2222 +0.4 2.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Ga0059261_3141 +0.3 1.1 Acetyltransferases compare
Ga0059261_1599 +0.3 3.1 Uncharacterized conserved protein compare
Ga0059261_2966 +0.3 1.7 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_0267 +0.3 1.1 Predicted membrane protein compare
Ga0059261_0252 +0.3 1.0 SpoIIAA-like compare
Ga0059261_3048 +0.3 1.2 Transcriptional regulators compare
Ga0059261_2398 +0.3 1.9 hypothetical protein compare
Ga0059261_0850 +0.3 1.2 hypothetical protein compare
Ga0059261_2229 +0.3 1.3 Predicted transcriptional regulators compare
Ga0059261_0651 +0.3 1.9 Methylase of chemotaxis methyl-accepting proteins compare
Ga0059261_3498 +0.3 1.3 Iron-sulfur cluster assembly accessory protein compare
Ga0059261_0726 +0.3 0.8 hypothetical protein compare
Ga0059261_0889 +0.3 0.9 Cold shock proteins compare
Ga0059261_3722 +0.3 2.2 Methyltransferase domain compare
Ga0059261_1171 +0.3 1.9 Uncharacterized conserved protein compare
Ga0059261_1606 +0.3 2.0 Domain of unknown function (DUF4281) compare
Ga0059261_2840 +0.3 1.1 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0627 +0.3 0.6 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_1197 +0.3 1.3 hypothetical protein compare
Ga0059261_4142 +0.3 1.9 hypothetical protein compare
Ga0059261_3639 +0.3 2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1126 +0.3 1.4 Response regulator compare
Ga0059261_3720 +0.3 1.5 Integral membrane protein CcmA involved in cell shape determination compare
Ga0059261_0621 +0.3 1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17) compare
Ga0059261_0526 +0.3 1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Ga0059261_0164 +0.3 1.7 hypothetical protein compare
Ga0059261_2285 +0.3 0.4 Fe2+ transport system protein A compare
Ga0059261_2331 +0.3 1.8 hypothetical protein compare
Ga0059261_0244 +0.3 1.6 FOG: CheY-like receiver compare
Ga0059261_3134 +0.3 2.2 hypothetical protein compare
Ga0059261_0035 +0.3 0.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_0028 +0.3 1.6 Predicted transcriptional regulators compare
Ga0059261_1762 +0.3 0.7 hypothetical protein compare
Ga0059261_3800 +0.3 1.6 Cold shock proteins compare
Ga0059261_4217 +0.3 0.6 hypothetical protein compare
Ga0059261_2929 +0.3 0.7 oxygen-dependent methionine synthase, methyltransferase component MesD (from data) compare
Ga0059261_1530 +0.3 1.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_2313 +0.3 1.4 condensin subunit Smc compare
Ga0059261_3727 +0.3 1.7 hypothetical protein compare
Ga0059261_3783 +0.3 1.3 hypothetical protein compare
Ga0059261_2952 +0.3 1.2 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_0770 +0.3 0.6 hypothetical protein compare
Ga0059261_2978 +0.3 1.1 Transcriptional regulators compare
Ga0059261_1549 +0.3 1.0 hypothetical protein compare
Ga0059261_3635 +0.3 1.2 Predicted integral membrane protein compare
Ga0059261_1782 +0.3 1.3 Transposase DDE domain compare
Ga0059261_2070 +0.3 1.7 Flagellar assembly protein FliH compare
Ga0059261_3445 +0.3 1.7 PHP domain compare
Ga0059261_2155 +0.3 1.6 hypothetical protein compare
Ga0059261_0445 +0.3 0.7 hypothetical protein compare
Ga0059261_1859 +0.3 1.5 Enolase C-terminal domain-like compare
Ga0059261_3548 +0.3 1.9 hypothetical protein compare
Ga0059261_1739 +0.3 1.0 Conjugal transfer protein TraD compare
Ga0059261_0360 +0.3 1.6 Putative NADH-flavin reductase compare
Ga0059261_3770 +0.3 1.8 Beta-lactamase class A compare
Ga0059261_3207 +0.3 1.4 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_3208 +0.3 0.7 hypothetical protein compare
Ga0059261_0609 +0.3 1.0 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Ga0059261_3194 +0.3 1.8 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) compare
Ga0059261_1381 +0.3 1.4 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_2858 +0.3 1.6 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0773 +0.3 0.9 Esterase/lipase compare
Ga0059261_0253 +0.3 1.9 hypothetical protein compare
Ga0059261_0655 +0.3 1.6 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain/CheW-like domain/Signal transducing histidine kinase, homodimeric domain compare
Ga0059261_0596 +0.3 1.4 Cation efflux family compare
Ga0059261_2731 +0.3 1.1 transcriptional regulator, AraC family compare
Ga0059261_2262 +0.3 1.8 Predicted acetyltransferase compare
Ga0059261_3193 +0.2 2.3 Dolichyl-phosphate-mannose-protein mannosyltransferase compare
Ga0059261_3216 +0.2 1.0 Acetyltransferases compare
Ga0059261_3915 +0.2 1.2 hypothetical protein compare
Ga0059261_2709 +0.2 1.3 hypothetical protein compare
Ga0059261_2758 +0.2 1.5 Uncharacterized membrane-associated protein compare
Ga0059261_3833 +0.2 0.7 hypothetical protein compare
Ga0059261_0227 +0.2 0.8 hypothetical protein compare
Ga0059261_3433 +0.2 1.5 ATPases involved in chromosome partitioning compare
Ga0059261_1122 +0.2 0.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_2581 +0.2 1.1 Uncharacterized conserved protein (DUF2285) compare
Ga0059261_4222 +0.2 1.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3271 +0.2 0.4 arsenate reductase (glutaredoxin) compare
Ga0059261_0653 +0.2 1.8 Response regulator receiver domain compare
Ga0059261_1046 +0.2 1.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_1840 +0.2 1.6 hypothetical protein compare
Ga0059261_1531 +0.2 0.9 hypothetical protein compare
Ga0059261_2126 +0.2 1.2 ETC complex I subunit conserved region compare
Ga0059261_3998 +0.2 1.8 Beta-lactamase class C and other penicillin binding proteins compare
Ga0059261_2309 +0.2 1.3 transcriptional regulator, LacI family compare
Ga0059261_1927 +0.2 1.6 hypothetical protein compare
Ga0059261_1449 +0.2 1.7 Glycine zipper 2TM domain compare
Ga0059261_2916 +0.2 0.9 P-type conjugative transfer protein TrbJ compare
Ga0059261_2682 +0.2 1.6 Response regulator receiver domain compare
Ga0059261_1082 +0.2 1.3 Chemotaxis signal transduction protein compare
Ga0059261_3624 +0.2 1.4 hypothetical protein compare
Ga0059261_0385 +0.2 1.4 P-type conjugative transfer protein TrbJ compare
Ga0059261_1759 +0.2 1.1 Phosphoadenosine phosphosulfate reductase family compare
Ga0059261_3566 +0.2 0.9 hypothetical protein compare
Ga0059261_3187 +0.2 1.4 Polysaccharide deacetylase compare
Ga0059261_4049 +0.2 1.4 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs compare
Ga0059261_0905 +0.2 1.6 Protein of unknown function (DUF998) compare
Ga0059261_1300 +0.2 1.0 hypothetical protein compare
Ga0059261_1115 +0.2 0.4 Chemotaxis protein; stimulates methylation of MCP proteins compare
Ga0059261_2930 +0.2 1.3 Predicted Na+-dependent transporter compare
Ga0059261_3237 +0.2 0.9 hypothetical protein compare
Ga0059261_2749 +0.2 1.6 transcriptional regulator, TetR family compare
Ga0059261_0606 +0.2 1.5 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_0099 +0.2 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3834 +0.2 1.2 Molecular chaperone (small heat shock protein) compare
Ga0059261_3970 +0.2 1.8 Predicted RNA polymerase sigma factor containing a TPR repeat domain compare
Ga0059261_1595 +0.2 2.0 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1763 +0.2 0.8 hypothetical protein compare
Ga0059261_0127 +0.2 1.3 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Ga0059261_2281 +0.2 1.4 Phytanoyl-CoA dioxygenase (PhyH) compare
Ga0059261_0121 +0.2 0.6 Sporulation related domain compare
Ga0059261_0780 +0.2 1.8 transcriptional regulator, LuxR family compare
Ga0059261_3756 +0.2 1.6 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_1438 +0.2 1.2 Membrane proteins related to metalloendopeptidases compare
Ga0059261_0464 +0.2 0.6 hypothetical protein compare
Ga0059261_4185 +0.2 0.3 hypothetical protein compare
Ga0059261_4203 +0.2 0.9 Arabinose efflux permease compare
Ga0059261_2101 +0.2 0.8 Putative transposase of IS4/5 family (DUF4096) compare
Ga0059261_1727 +0.2 1.7 flagellar biosynthetic protein FliP compare
Ga0059261_0128 +0.2 1.3 clan AA aspartic protease, TIGR02281 family compare
Ga0059261_0898 +0.2 0.7 Membrane protein implicated in regulation of membrane protease activity compare
Ga0059261_1130 +0.2 1.6 hypothetical protein compare
Ga0059261_1120 +0.2 1.1 Chemotaxis protein histidine kinase and related kinases compare
Ga0059261_1156 +0.2 2.0 Dolichyl-phosphate-mannose-protein mannosyltransferase compare
Ga0059261_2526 +0.2 1.8 hypothetical protein compare
Ga0059261_0065 +0.2 1.1 ABC-type dipeptide transport system, periplasmic component compare
Ga0059261_2506 +0.2 1.5 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
Ga0059261_1139 +0.2 1.2 MgtE intracellular N domain compare
Ga0059261_0294 +0.2 1.0 arsenate reductase (glutaredoxin) compare
Ga0059261_1733 +0.2 1.4 hypothetical protein compare
Ga0059261_2461 +0.2 1.4 hypothetical protein compare
Ga0059261_4202 +0.2 1.7 Putative bacterial sensory transduction regulator compare
Ga0059261_0448 +0.2 0.3 hypothetical protein compare
Ga0059261_1580 +0.2 1.8 Glycosidases compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Choline chloride across organisms