Experiment set1IT031 for Cupriavidus basilensis FW507-4G11

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS14365 -6.5 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18305 -6.3 -4.3 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.0 -4.1 3-isopropylmalate dehydratase compare
RR42_RS05860 -5.9 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS30655 -5.9 -5.7 LysR family transcriptional regulator compare
RR42_RS19005 -5.7 -4.0 3-dehydroquinate synthase compare
RR42_RS16255 -5.7 -7.8 sulfate adenylyltransferase compare
RR42_RS06485 -5.4 -6.4 chorismate synthase compare
RR42_RS14385 -5.3 -5.1 3-isopropylmalate dehydrogenase compare
RR42_RS18300 -5.2 -6.2 anthranilate synthase subunit II compare
RR42_RS16250 -5.1 -7.0 sulfate adenylyltransferase compare
RR42_RS14400 -5.1 -3.5 isopropylmalate isomerase compare
RR42_RS16275 -5.1 -3.5 membrane protein compare
RR42_RS14320 -5.1 -6.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS07425 -4.9 -6.7 IclR family transcriptional regulator compare
RR42_RS01160 -4.9 -11.3 homoserine O-acetyltransferase compare
RR42_RS33240 -4.7 -12.6 GDP-L-fucose synthase compare
RR42_RS04475 -4.6 -9.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16265 -4.6 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS30660 -4.5 -10.7 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS18295 -4.5 -12.9 anthranilate synthase component I compare
RR42_RS16270 -4.4 -9.1 sulfite reductase compare
RR42_RS33255 -4.4 -4.3 protein-tyrosine phosphatase compare
RR42_RS33210 -4.2 -7.9 teichoic acid biosynthesis protein compare
RR42_RS20205 -4.1 -4.0 chromosome partitioning protein compare
RR42_RS33260 -4.1 -6.8 multidrug MFS transporter compare
RR42_RS16245 -4.1 -6.5 uroporphyrin-III methyltransferase compare
RR42_RS01385 -4.0 -3.5 5,10-methylenetetrahydrofolate reductase compare
RR42_RS01845 -4.0 -2.5 glycerol-3-phosphate dehydrogenase compare
RR42_RS18850 -4.0 -3.8 preprotein translocase subunit TatC compare
RR42_RS17645 -3.9 -7.0 shikimate dehydrogenase compare
RR42_RS33250 -3.9 -8.3 tyrosine protein kinase compare
RR42_RS18855 -3.9 -3.8 preprotein translocase compare
RR42_RS01290 -3.9 -7.4 thiamine biosynthesis protein ThiC compare
RR42_RS16280 -3.7 -5.7 transcriptional regulator compare
RR42_RS07555 -3.7 -3.2 potassium transporter Kup compare
RR42_RS12175 -3.6 -11.9 malate synthase compare
RR42_RS18990 -3.6 -19.0 glutamate synthase compare
RR42_RS33235 -3.6 -9.4 GDP-mannose 4,6-dehydratase compare
RR42_RS19010 -3.5 -8.6 shikimate kinase compare
RR42_RS14360 -3.3 -2.0 tryptophan synthase subunit alpha compare
RR42_RS13880 -3.2 -14.1 AMP-dependent synthetase compare
RR42_RS15525 -3.1 -1.9 hypothetical protein compare
RR42_RS04700 -3.1 -1.9 ribonuclease G compare
RR42_RS04460 -3.0 -5.8 chorismate mutase compare
RR42_RS16240 -3.0 -1.8 cobalamin biosynthesis protein CbiX compare
RR42_RS33245 -2.9 -8.4 mannose-1-phosphate guanyltransferase compare
RR42_RS12925 -2.9 -2.8 ATPase compare
RR42_RS16260 -2.8 -1.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS15890 -2.8 -8.0 heme biosynthesis protein HemY compare
RR42_RS12040 -2.7 -11.9 MFS transporter compare
RR42_RS13620 -2.6 -1.6 ferredoxin compare
RR42_RS03080 -2.6 -4.5 recombinase RecA compare
RR42_RS07360 -2.6 -4.6 ATPase compare
RR42_RS24605 -2.5 -5.7 TetR family transcriptional regulator compare
RR42_RS18985 -2.5 -6.4 glutamate synthase compare
RR42_RS04535 -2.3 -4.3 cysteine synthase compare
RR42_RS02420 -2.3 -1.4 SAM-dependent methyltransferase compare
RR42_RS15895 -2.3 -8.4 uroporphyrinogen III methyltransferase compare
RR42_RS00380 -2.3 -6.7 GntR family transcriptional regulator compare
RR42_RS05420 -2.2 -6.7 membrane protein compare
RR42_RS33575 -2.2 -3.8 hypothetical protein compare
RR42_RS04145 -2.2 -1.8 peptidase A24 compare
RR42_RS02045 -2.2 -11.8 GTPase compare
RR42_RS08000 -2.1 -1.8 hypothetical protein compare
RR42_RS33215 -2.1 -10.7 transferase compare
RR42_RS18825 -2.1 -3.3 ubiquinol-cytochrome C reductase compare
RR42_RS34255 -2.1 -6.3 aldehyde dehydrogenase compare
RR42_RS11795 -2.0 -2.4 PEP synthetase regulatory protein compare
RR42_RS17060 -2.0 -13.2 histidine kinase compare
RR42_RS21470 -2.0 -1.2 hypothetical protein compare
RR42_RS04895 -2.0 -10.7 serine/threonine protein phosphatase compare
RR42_RS18820 -2.0 -5.6 cytochrome B compare
RR42_RS21820 -1.8 -4.0 GntR family transcriptional regulator compare
RR42_RS17620 -1.8 -4.9 phosphatidylglycerophosphatase compare
RR42_RS26900 -1.8 -1.7 enoyl-CoA hydratase compare
RR42_RS18815 -1.8 -4.2 cytochrome C compare
RR42_RS03095 -1.8 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS04470 -1.8 -3.0 prephenate dehydrogenase compare
RR42_RS04135 -1.8 -1.7 pilus assembly protein CpaB compare
RR42_RS20380 -1.8 -6.9 histidine kinase compare
RR42_RS20375 -1.7 -4.0 transcriptional regulator compare
RR42_RS02085 -1.7 -5.5 RNA polymerase subunit sigma-54 compare
RR42_RS21435 -1.7 -3.7 hypothetical protein compare
RR42_RS35875 -1.7 -8.0 UDP-galactose-4-epimerase compare
RR42_RS15410 -1.7 -4.3 membrane protein compare
RR42_RS06545 -1.7 -2.3 thioesterase compare
RR42_RS07605 -1.7 -5.7 poly-beta-hydroxybutyrate polymerase compare
RR42_RS06095 -1.6 -3.1 hypothetical protein compare
RR42_RS19885 -1.6 -1.3 aminoglycoside transporter compare
RR42_RS01255 -1.6 -7.3 lauroyl acyltransferase compare
RR42_RS17055 -1.6 -6.3 LuxR family transcriptional regulator compare
RR42_RS27060 -1.6 -2.8 cation transporter compare
RR42_RS15035 -1.6 -5.3 ZIP zinc transporter compare
RR42_RS17105 -1.6 -7.4 Clp protease ClpX compare
RR42_RS12550 -1.6 -3.6 hypothetical protein compare
RR42_RS12305 -1.6 -1.3 hypothetical protein compare
RR42_RS14985 -1.5 -1.8 30S ribosomal protein S21 compare
RR42_RS01885 -1.5 -4.6 cytochrome C oxidase assembly protein compare
RR42_RS13910 -1.5 -7.1 glutamate racemase compare
RR42_RS09300 -1.5 -2.1 aromatic ring-opening dioxygenase LigB compare
RR42_RS06020 -1.5 -1.4 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS00875 -1.5 -8.9 isocitrate dehydrogenase compare
RR42_RS01485 -1.5 -2.3 phosphonate transporter compare
RR42_RS09180 -1.5 -1.2 Rrf2 family transcriptional regulator compare
RR42_RS01380 -1.5 -1.4 membrane protein compare
RR42_RS37320 -1.4 -2.6 hypothetical protein compare
RR42_RS26905 -1.4 -6.1 methylcrotonoyl-CoA carboxylase compare
RR42_RS14790 -1.4 -5.7 cobalamin biosynthesis protein CobD compare
RR42_RS07620 -1.4 -3.4 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS12185 -1.4 -1.7 LysR family transcriptional regulator compare
RR42_RS13800 -1.4 -5.0 formyltetrahydrofolate deformylase compare
RR42_RS26540 -1.4 -1.1 3-phosphoglycerate dehydrogenase compare
RR42_RS21955 -1.4 -1.3 hypothetical protein compare
RR42_RS02310 -1.4 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS17390 -1.3 -4.2 ATP-dependent DNA helicase RecG compare
RR42_RS13850 -1.3 -3.0 hypothetical protein compare
RR42_RS12050 -1.3 -5.9 DNA polymerase compare
RR42_RS16640 -1.3 -1.2 LysR family transcriptional regulator compare
RR42_RS18270 -1.3 -3.1 murein transglycosylase compare
RR42_RS22590 -1.3 -0.9 organic hydroperoxide resistance protein compare
RR42_RS12180 -1.3 -3.0 haloacid dehalogenase compare
RR42_RS19065 -1.3 -6.7 transcriptional regulator compare
RR42_RS21220 -1.3 -1.2 iron transporter FeoB compare
RR42_RS05955 -1.3 -1.2 hypothetical protein compare
RR42_RS05990 -1.3 -6.0 aromatic amino acid aminotransferase compare
RR42_RS15475 -1.3 -4.0 protein tolQ compare
RR42_RS14965 -1.3 -3.1 hypothetical protein compare
RR42_RS32975 -1.2 -2.0 LysR family transcriptional regulator compare
RR42_RS07565 -1.2 -6.2 transcription accessory protein compare
RR42_RS15470 -1.2 -1.8 biopolymer transporter ExbD compare
RR42_RS18930 -1.2 -2.2 BolA family transcriptional regulator compare
RR42_RS13190 -1.2 -3.4 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS19895 -1.2 -1.7 elongation factor GreAB compare
RR42_RS01880 -1.2 -5.3 cytochrome oxidase subunit I compare
RR42_RS27215 -1.2 -3.0 LysR family transcriptional regulator compare
RR42_RS01915 -1.1 -4.8 cytochrome C oxidase subunit I compare
RR42_RS14395 -1.1 -1.7 entericidin compare
RR42_RS25200 -1.1 -3.7 TetR family transcriptional regulator compare
RR42_RS01895 -1.1 -4.4 MFS transporter compare
RR42_RS02810 -1.1 -2.1 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS30640 -1.1 -4.9 DNA mismatch repair protein MutT compare
RR42_RS20195 -1.1 -0.8 ATPase F0F1 compare
RR42_RS13465 -1.1 -2.9 phosphate transporter permease subunit PstC compare
RR42_RS15245 -1.1 -2.0 alpha/beta hydrolase compare
RR42_RS01920 -1.1 -2.4 protoheme IX farnesyltransferase compare
RR42_RS29235 -1.1 -3.4 hypothetical protein compare
RR42_RS01260 -1.1 -5.3 lauroyl acyltransferase compare
RR42_RS17930 -1.1 -2.9 RNA pyrophosphohydrolase compare
RR42_RS03390 -1.1 -3.7 ABC transporter substrate-binding protein compare
RR42_RS18670 -1.1 -4.1 metal-dependent hydrolase compare
RR42_RS28885 -1.1 -4.1 membrane protein compare
RR42_RS23380 -1.1 -2.3 flagellar basal body protein FliL compare
RR42_RS15745 -1.1 -3.9 group1 glycosyl transferase compare
RR42_RS04710 -1.1 -3.1 50S rRNA methyltransferase compare
RR42_RS23140 -1.0 -1.3 peptidylprolyl isomerase compare
RR42_RS26350 -1.0 -1.8 bleomycin resistance protein compare
RR42_RS00760 -1.0 -1.7 hypothetical protein compare
RR42_RS03370 -1.0 -3.5 fructose ABC transporter, substrate-binding component (FrcB) (from data) compare
RR42_RS09375 -1.0 -1.0 taurine dioxygenase compare
RR42_RS32590 -1.0 -1.3 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS33195 -1.0 -5.9 UDP-sugar lipid carrier transferase compare
RR42_RS20285 -1.0 -3.4 amino acid ABC transporter ATP-binding protein compare
RR42_RS31850 -1.0 -1.8 2-keto-4-pentenoate hydratase compare
RR42_RS07295 -1.0 -1.6 LysR family transcriptional regulator compare
RR42_RS18430 -1.0 -2.1 prevent-host-death protein compare
RR42_RS09015 -1.0 -2.8 trigger factor compare
RR42_RS16620 -1.0 -2.2 hypothetical protein compare
RR42_RS01910 -1.0 -5.1 cytochrome C oxidase subunit I compare
RR42_RS17685 -1.0 -4.8 alkyl hydroperoxide reductase compare
RR42_RS14540 -1.0 -2.3 DNA glycosylase compare
RR42_RS11785 -1.0 -1.0 NfeD-like family protein 1 compare
RR42_RS36700 -1.0 -3.5 multidrug transporter compare
RR42_RS02500 -1.0 -1.6 TetR family transcriptional regulator compare
RR42_RS21095 -1.0 -3.4 GntR family transcriptional regulator compare
RR42_RS20965 -1.0 -3.0 transferase compare
RR42_RS00790 -1.0 -4.2 chemotaxis protein CheY compare
RR42_RS17050 -0.9 -3.8 phosphoribosylglycinamide formyltransferase compare
RR42_RS07140 -0.9 -0.9 hypothetical protein compare
RR42_RS15640 -0.9 -0.8 hypothetical protein compare
RR42_RS07615 -0.9 -1.7 3-ketoacyl-ACP reductase compare
RR42_RS28290 -0.9 -3.0 DNA-binding protein compare
RR42_RS13130 -0.9 -1.7 membrane protein compare
RR42_RS27275 -0.9 -2.3 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
RR42_RS04205 -0.9 -1.6 glycine cleavage system regulatory protein compare
RR42_RS06015 -0.9 -6.2 recombinase compare
RR42_RS12250 -0.9 -1.9 sulfate ABC transporter ATP-binding protein compare
RR42_RS25785 -0.9 -1.4 TetR family transcriptional regulator compare
RR42_RS12130 -0.9 -1.5 hypothetical protein compare
RR42_RS08365 -0.9 -2.7 hypothetical protein compare
RR42_RS29285 -0.9 -1.8 hypothetical protein compare
RR42_RS18840 -0.9 -3.1 2-alkenal reductase compare
RR42_RS19690 -0.9 -2.4 Tat pathway signal protein compare
RR42_RS11550 -0.9 -2.2 3-oxoacyl-ACP reductase compare
RR42_RS22165 -0.9 -1.4 hypothetical protein compare
RR42_RS34870 -0.9 -3.7 hypothetical protein compare
RR42_RS16950 -0.9 -2.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS08590 -0.9 -1.3 baseplate assembly protein compare
RR42_RS33910 -0.9 -1.7 LysR family transcriptional regulator compare
RR42_RS26895 -0.9 -4.0 3-methylcrotonyl-CoA carboxylase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Cupriavidus basilensis FW507-4G11

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms