Experiment set1IT031 for Burkholderia phytofirmans PsJN

Compare to:

LB with Cobalt chloride hexahydrate 0.25 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -7.8 -4.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02865 -4.6 -3.2 hypothetical protein compare
BPHYT_RS15010 -4.4 -5.9 cation transporter compare
BPHYT_RS16255 -3.7 -7.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03725 -3.3 -2.7 serine hydroxymethyltransferase compare
BPHYT_RS17520 -2.9 -6.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS23840 -2.9 -4.6 methyltransferase compare
BPHYT_RS16440 -2.9 -14.0 hemolysin D conserved
BPHYT_RS16710 -2.8 -2.1 LysR family transcriptional regulator compare
BPHYT_RS08565 -2.7 -2.2 dihydroorotate dehydrogenase compare
BPHYT_RS29520 -2.6 -1.5 hypothetical protein compare
BPHYT_RS21905 -2.5 -1.7 IclR family transcriptional regulator compare
BPHYT_RS14855 -2.4 -2.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06410 -2.4 -2.3 transcriptional regulator compare
BPHYT_RS14845 -2.3 -3.7 cysteine synthase compare
BPHYT_RS16270 -2.3 -4.9 phosphoglycerate kinase compare
BPHYT_RS15620 -2.2 -4.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04290 -2.2 -2.8 glycosyl transferase family 2 compare
BPHYT_RS16245 -2.1 -6.8 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS01485 -2.1 -1.6 histidine kinase compare
BPHYT_RS16840 -2.0 -3.8 transketolase compare
BPHYT_RS02590 -2.0 -7.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS15890 -2.0 -1.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS26490 -1.9 -1.8 hypothetical protein compare
BPHYT_RS09515 -1.8 -4.1 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04965 -1.8 -5.5 ATP-binding protein compare
BPHYT_RS01625 -1.8 -4.4 chemotaxis protein CheY compare
BPHYT_RS08850 -1.8 -2.6 transcriptional regulator compare
BPHYT_RS26025 -1.7 -1.4 hypothetical protein compare
BPHYT_RS12785 -1.7 -3.4 Rrf2 family transcriptional regulator compare
BPHYT_RS02010 -1.7 -2.0 copper homeostasis protein CutC compare
BPHYT_RS06190 -1.6 -5.1 heptosyltransferase compare
BPHYT_RS08765 -1.6 -1.3 ABC transporter ATP-binding protein compare
BPHYT_RS18765 -1.6 -6.4 flagellar biosynthesis protein FliS compare
BPHYT_RS15415 -1.6 -9.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18340 -1.6 -1.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS05705 -1.6 -1.5 hypothetical protein compare
BPHYT_RS16835 -1.5 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33920 -1.5 -6.7 type II citrate synthase compare
BPHYT_RS26925 -1.5 -2.5 NIPSNAP family containing protein compare
BPHYT_RS09315 -1.5 -1.2 chemotaxis protein CheY compare
BPHYT_RS14550 -1.4 -1.3 tRNA-Asn compare
BPHYT_RS08960 -1.4 -1.8 threonine synthase compare
BPHYT_RS01455 -1.4 -1.1 peptide deformylase compare
BPHYT_RS17530 -1.4 -5.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS20095 -1.3 -1.0 transcriptional regulator compare
BPHYT_RS22910 -1.2 -1.4 hypothetical protein compare
BPHYT_RS26675 -1.2 -2.1 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS32210 -1.2 -0.7 hypothetical protein compare
BPHYT_RS05285 -1.2 -1.5 hypothetical protein compare
BPHYT_RS02860 -1.2 -1.1 membrane protein compare
BPHYT_RS22835 -1.1 -1.1 flagellar motor protein MotA compare
BPHYT_RS14670 -1.1 -1.2 hypothetical protein compare
BPHYT_RS34445 -1.1 -3.8 GntR family transcriptional regulator compare
BPHYT_RS12840 -1.1 -4.0 pyruvate dehydrogenase compare
BPHYT_RS15615 -1.1 -2.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS17640 -1.1 -3.1 2-alkenal reductase compare
BPHYT_RS02595 -1.1 -1.4 sulfurtransferase compare
BPHYT_RS20725 -1.1 -1.1 histidine kinase compare
BPHYT_RS23445 -1.1 -1.2 hexuronate transporter compare
BPHYT_RS16340 -1.1 -4.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS12925 -1.0 -1.0 exodeoxyribonuclease III compare
BPHYT_RS01620 -1.0 -6.1 sensor histidine kinase compare
BPHYT_RS12845 -1.0 -7.3 ATPase compare
BPHYT_RS10650 -1.0 -1.2 membrane protein compare
BPHYT_RS26390 -1.0 -1.0 antibiotic resistance protein compare
BPHYT_RS08525 -1.0 -1.2 SAM-dependent methyltransferase compare
BPHYT_RS14140 -1.0 -3.5 phosphate transporter permease subunit PstC compare
BPHYT_RS34810 -1.0 -4.6 RND transporter compare
BPHYT_RS30465 -1.0 -1.2 short-chain dehydrogenase compare
BPHYT_RS02610 -1.0 -3.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS32260 -1.0 -1.5 hypothetical protein compare
BPHYT_RS04455 -1.0 -1.2 glycosyl transferase compare
BPHYT_RS06405 -1.0 -4.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS14380 -1.0 -4.3 elongation factor 4 compare
BPHYT_RS27920 -1.0 -1.3 tricarballylate utilization protein B compare
BPHYT_RS06175 -1.0 -3.8 LPS biosynthesis compare
BPHYT_RS26820 -1.0 -1.7 LysR family transcriptional regulator compare
BPHYT_RS28705 -1.0 -1.3 IclR family transcriptional regulator compare
BPHYT_RS11235 -1.0 -0.9 hypothetical protein compare
BPHYT_RS20850 -1.0 -2.2 multidrug DMT transporter permease compare
BPHYT_RS09330 -1.0 -6.8 phytoene synthase compare
BPHYT_RS32525 -1.0 -1.5 hypothetical protein compare
BPHYT_RS17095 -1.0 -2.0 proline--tRNA ligase compare
BPHYT_RS34050 -0.9 -2.1 secretion system protein F compare
BPHYT_RS34295 -0.9 -0.9 fimbrial protein compare
BPHYT_RS33135 -0.9 -1.6 LysR family transcriptional regulator compare
BPHYT_RS21860 -0.9 -1.2 hypothetical protein compare
BPHYT_RS29620 -0.9 -0.8 hypothetical protein compare
BPHYT_RS09280 -0.9 -1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS19085 -0.9 -4.6 flagellin compare
BPHYT_RS35955 -0.9 -1.4 hypothetical protein compare
BPHYT_RS10065 -0.9 -1.1 cytochrome C oxidase subunit I compare
BPHYT_RS08905 -0.9 -1.8 peroxiredoxin compare
BPHYT_RS06350 -0.9 -1.4 chemotaxis protein CheY compare
BPHYT_RS24315 -0.9 -1.8 phosphoribosyltransferase compare
BPHYT_RS36220 -0.9 -0.9 hypothetical protein compare
BPHYT_RS35205 -0.9 -2.4 hypothetical protein compare
BPHYT_RS05010 -0.9 -3.1 RpiR family transcriptional regulator compare
BPHYT_RS22420 -0.9 -1.0 membrane protein compare
BPHYT_RS12990 -0.9 -2.3 iron transporter compare
BPHYT_RS05030 -0.9 -3.0 sugar ABC transporter permease compare
BPHYT_RS32880 -0.8 -1.0 alanine acetyltransferase compare
BPHYT_RS17405 -0.8 -0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS05320 -0.8 -1.2 beta-lactamase compare
BPHYT_RS17445 -0.8 -2.5 GTP-binding protein YchF compare
BPHYT_RS12985 -0.8 -1.5 amino acid acetyltransferase compare
BPHYT_RS23350 -0.8 -1.9 NAD-dependent epimerase/dehydratase compare
BPHYT_RS28830 -0.8 -1.0 LysR family transcriptional regulator compare
BPHYT_RS35750 -0.8 -1.0 hypothetical protein compare
BPHYT_RS14395 -0.8 -3.1 sugar dehydratase compare
BPHYT_RS03455 -0.8 -1.4 paraquat-inducible protein A compare
BPHYT_RS16470 -0.8 -2.3 DeoR faimly transcriptional regulator compare
BPHYT_RS04385 -0.8 -2.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS21665 -0.8 -3.2 hypothetical protein compare
BPHYT_RS17680 -0.8 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS30750 -0.8 -1.4 GntR family transcriptional regulator compare
BPHYT_RS16675 -0.8 -1.5 dihydroorotase compare
BPHYT_RS24010 -0.8 -1.5 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS29185 -0.8 -1.5 sugar ABC transporter permease compare
BPHYT_RS31950 -0.8 -1.5 short-chain dehydrogenase compare
BPHYT_RS10115 -0.8 -2.0 hypothetical protein compare
BPHYT_RS10765 -0.8 -2.3 amidase compare
BPHYT_RS27295 -0.8 -1.1 hypothetical protein compare
BPHYT_RS04370 -0.8 -1.5 glycosyl transferase compare
BPHYT_RS15325 -0.8 -2.3 ribonuclease PH compare
BPHYT_RS03480 -0.8 -1.9 ferritin compare
BPHYT_RS03640 -0.8 -2.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS03235 -0.8 -1.5 enoyl-CoA hydratase compare
BPHYT_RS21045 -0.8 -2.0 bis(5'-nucleosyl)-tetraphosphatase compare
BPHYT_RS13810 -0.8 -2.3 type VI secretion protein compare
BPHYT_RS01630 -0.8 -1.6 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS29065 -0.8 -1.4 hypothetical protein compare
BPHYT_RS34805 -0.8 -4.0 ABC transporter compare
BPHYT_RS12465 -0.8 -1.4 inositol monophosphatase compare
BPHYT_RS10645 -0.8 -1.0 cyanate hydratase compare
BPHYT_RS06840 -0.7 -2.6 hypothetical protein compare
BPHYT_RS17525 -0.7 -1.8 glutaredoxin compare
BPHYT_RS02285 -0.7 -3.5 cell division protein compare
BPHYT_RS25025 -0.7 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS20155 -0.7 -0.8 hypothetical protein compare
BPHYT_RS06195 -0.7 -1.6 membrane protein compare
BPHYT_RS01585 -0.7 -3.8 major facilitator superfamily protein compare
BPHYT_RS16475 -0.7 -2.1 hypothetical protein compare
BPHYT_RS09480 -0.7 -0.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17265 -0.7 -1.1 cell division protein compare
BPHYT_RS17875 -0.7 -3.0 hypothetical protein compare
BPHYT_RS02130 -0.7 -2.4 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS11685 -0.7 -0.9 phasin family protein compare
BPHYT_RS32290 -0.7 -1.3 hypothetical protein compare
BPHYT_RS34320 -0.7 -1.1 DNA-binding protein compare
BPHYT_RS02815 -0.7 -2.8 methyltransferase compare
BPHYT_RS03410 -0.7 -1.4 queuine tRNA-ribosyltransferase compare
BPHYT_RS23155 -0.7 -0.9 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS33345 -0.7 -2.4 hypothetical protein compare
BPHYT_RS26465 -0.7 -0.8 metallophosphoesterase compare
BPHYT_RS30190 -0.7 -1.6 ABC transporter permease compare
BPHYT_RS12150 -0.7 -5.6 PII uridylyl-transferase compare
BPHYT_RS34100 -0.7 -1.5 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS21645 -0.7 -1.6 LysR family transcriptional regulator compare
BPHYT_RS18250 -0.7 -3.6 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS21910 -0.7 -1.3 ABC transporter permease compare
BPHYT_RS26965 -0.7 -0.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS05330 -0.7 -1.2 phosphohydrolase compare
BPHYT_RS05730 -0.7 -2.2 hypothetical protein compare
BPHYT_RS31720 -0.7 -2.6 LysR family transcriptional regulator compare
BPHYT_RS25500 -0.7 -0.7 hypothetical protein compare
BPHYT_RS04430 -0.7 -1.2 amino acid ABC transporter ATPase compare
BPHYT_RS21595 -0.7 -1.3 TetR family transcriptional regulator compare
BPHYT_RS33030 -0.7 -0.8 hypothetical protein compare
BPHYT_RS08405 -0.7 -0.9 hypothetical protein compare
BPHYT_RS20235 -0.7 -2.4 iron ABC transporter compare
BPHYT_RS18270 -0.7 -3.9 phenylacetic acid degradation protein compare
BPHYT_RS08125 -0.7 -4.3 ATPase compare
BPHYT_RS08685 -0.7 -2.2 hypothetical protein compare
BPHYT_RS16345 -0.7 -2.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18265 -0.7 -2.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS31205 -0.7 -1.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS33740 -0.7 -1.6 hypothetical protein compare
BPHYT_RS09385 -0.7 -0.7 FAD-dependent oxidoreductase compare
BPHYT_RS19565 -0.7 -4.1 gamma-glutamyl:cysteine ligase compare
BPHYT_RS16210 -0.7 -1.3 peptidase compare
BPHYT_RS02540 -0.7 -1.1 hypothetical protein compare
BPHYT_RS04215 -0.7 -1.4 hypothetical protein compare
BPHYT_RS27455 -0.7 -1.0 rod shape-determining protein MreB compare
BPHYT_RS17490 -0.6 -1.4 haloacid dehalogenase compare
BPHYT_RS28485 -0.6 -0.8 GntR family transcriptional regulator compare
BPHYT_RS33965 -0.6 -0.8 methylcitrate synthase compare
BPHYT_RS18655 -0.6 -1.6 3-oxoacyl-ACP synthase compare
BPHYT_RS33175 -0.6 -1.4 hypothetical protein compare
BPHYT_RS00025 -0.6 -2.8 hypothetical protein compare
BPHYT_RS16975 -0.6 -3.0 shikimate 5-dehydrogenase compare
BPHYT_RS31255 -0.6 -1.0 cytochrome B561 compare
BPHYT_RS16175 -0.6 -1.0 hemolysin D compare
BPHYT_RS25565 -0.6 -0.7 hypothetical protein compare
BPHYT_RS32845 -0.6 -2.6 ABC transporter substrate-binding protein compare
BPHYT_RS34060 -0.6 -1.5 pilus biosynthesis protein TadE compare
BPHYT_RS28415 -0.6 -2.2 hypothetical protein compare
BPHYT_RS25395 -0.6 -1.2 3-oxoacyl-ACP reductase compare
BPHYT_RS07960 -0.6 -1.1 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cobalt chloride hexahydrate in Burkholderia phytofirmans PsJN

For stress Cobalt chloride hexahydrate across organisms