Experiment set1IT030 for Pseudomonas fluorescens FW300-N2E2

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casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4047 -4.1 -9.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_71 -3.5 -8.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_2277 -3.5 -4.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4825 -3.3 -9.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4048 -3.2 -6.6 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_5156 -2.9 -4.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2753 -2.7 -5.8 HtrA protease/chaperone protein compare
Pf6N2E2_4826 -2.6 -9.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_178 -2.3 -2.0 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5950 -2.3 -6.0 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_5014 -2.2 -2.2 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5006 -2.1 -10.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3248 -2.0 -6.7 Probable transmembrane protein compare
Pf6N2E2_2080 -2.0 -2.3 hypothetical protein compare
Pf6N2E2_4803 -1.9 -1.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5316 -1.9 -3.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2189 -1.8 -6.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4764 -1.8 -7.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2217 -1.8 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3984 -1.7 -9.5 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3349 -1.7 -2.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2218 -1.7 -4.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4759 -1.6 -10.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_1147 -1.5 -3.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_3782 -1.5 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3461 -1.5 -2.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_6140 -1.4 -1.5 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4631 -1.4 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4761 -1.4 -7.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4009 -1.3 -7.8 GGDEF domain protein compare
Pf6N2E2_4763 -1.3 -8.1 Biotin synthesis protein BioC compare
Pf6N2E2_5728 -1.3 -3.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4369 -1.3 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5252 -1.2 -2.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4204 -1.2 -1.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5190 -1.1 -7.7 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_5242 -1.1 -2.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5579 -1.1 -4.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_2693 -1.1 -2.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3770 -1.0 -2.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_1776 -1.0 -2.3 Chemotaxis protein CheD compare
Pf6N2E2_3786 -1.0 -2.3 Twin-arginine translocation protein TatC compare
Pf6N2E2_1502 -1.0 -2.2 Two-component system regulatory protein compare
Pf6N2E2_613 -1.0 -1.8 lipoprotein, putative compare
Pf6N2E2_5153 -1.0 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf6N2E2_5756 -1.0 -3.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_1870 -1.0 -2.9 hypothetical protein compare
Pf6N2E2_16 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4638 -0.9 -2.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5292 -0.9 -4.8 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_5705 -0.9 -1.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4579 -0.9 -1.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4762 -0.9 -2.2 Biotin synthesis protein BioH compare
Pf6N2E2_4071 -0.9 -3.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4352 -0.9 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_1932 -0.9 -3.3 Transcriptional regulator, IclR family compare
Pf6N2E2_1490 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_1392 -0.9 -2.9 sensor histidine kinase compare
Pf6N2E2_3271 -0.9 -2.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3885 -0.9 -2.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5761 -0.8 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_5178 -0.8 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4678 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5001 -0.8 -1.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5086 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_241 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_302 -0.8 -3.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3095 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5312 -0.8 -1.4 FIG00964214: hypothetical protein compare
Pf6N2E2_5527 -0.8 -2.1 Cold shock protein CspC compare
Pf6N2E2_3899 -0.8 -5.1 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) compare
Pf6N2E2_5291 -0.8 -6.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3603 -0.8 -3.8 FIG003573: hypothetical protein compare
Pf6N2E2_2193 -0.8 -3.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5103 -0.8 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4824 -0.8 -2.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_2518 -0.8 -1.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_58 -0.8 -2.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3932 -0.8 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_2549 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_1705 -0.8 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5553 -0.7 -3.6 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_4391 -0.7 -3.6 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_3763 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_1211 -0.7 -1.8 Lactoylglutathione lyase compare
Pf6N2E2_3021 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_2073 -0.7 -3.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_942 -0.7 -1.4 Mll6465 protein compare
Pf6N2E2_939 -0.7 -2.4 hypothetical protein compare
Pf6N2E2_3630 -0.7 -3.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_5758 -0.7 -1.8 FIG00957314: hypothetical protein compare
Pf6N2E2_1667 -0.7 -2.5 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_6062 -0.7 -3.9 2-methylcitrate synthase (EC 2.3.3.5) (from data) compare
Pf6N2E2_1012 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_1391 -0.7 -1.5 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2200 -0.7 -1.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2010 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_2707 -0.7 -2.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5613 -0.7 -1.2 FIG00953674: hypothetical protein compare
Pf6N2E2_1784 -0.7 -2.7 Methyl-accepting chemotaxis protein compare
Pf6N2E2_5936 -0.7 -1.2 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_3312 -0.7 -1.6 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) compare
Pf6N2E2_2125 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_1812 -0.7 -2.6 peptide ABC transporter, ATP-binding protein compare
Pf6N2E2_4205 -0.6 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5425 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_3839 -0.6 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3875 -0.6 -1.2 FIG00953324: hypothetical protein compare
Pf6N2E2_955 -0.6 -1.4 FIG00953508: hypothetical protein compare
Pf6N2E2_2074 -0.6 -1.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5967 -0.6 -2.2 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4072 -0.6 -2.2 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_1037 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_5088 -0.6 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5243 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_5664 -0.6 -3.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_4548 -0.6 -1.5 hypothetical protein compare
Pf6N2E2_3702 -0.6 -2.2 FIG00953907: hypothetical protein compare
Pf6N2E2_579 -0.6 -1.2 FIG00962753: hypothetical protein compare
Pf6N2E2_5964 -0.6 -3.1 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf6N2E2_2373 -0.6 -1.2 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_70 -0.6 -2.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5902 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_3313 -0.6 -2.6 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_2527 -0.6 -2.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3346 -0.6 -3.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_1126 -0.6 -3.0 Two-component system regulatory protein compare
Pf6N2E2_1156 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_1735 -0.6 -1.3 PhnB protein compare
Pf6N2E2_2194 -0.6 -3.7 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_1783 -0.6 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4206 -0.6 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_5338 -0.6 -3.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3661 -0.6 -2.1 hypothetical protein compare
Pf6N2E2_3842 -0.6 -1.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_237 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_2640 -0.6 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3062 -0.5 -2.3 Membrane-associated zinc metalloprotease compare
Pf6N2E2_1199 -0.5 -2.4 hypothetical protein compare
Pf6N2E2_4351 -0.5 -4.0 Predicted signal transduction protein compare
Pf6N2E2_63 -0.5 -2.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_3300 -0.5 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_75 -0.5 -1.4 Colicin V production protein compare
Pf6N2E2_3908 -0.5 -3.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_6063 -0.5 -3.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2191 -0.5 -3.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Pf6N2E2_3835 -0.5 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_2352 -0.5 -1.9 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Pf6N2E2_1354 -0.5 -1.7 FIG026291: Hypothetical periplasmic protein compare
Pf6N2E2_4276 -0.5 -2.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4636 -0.5 -3.0 periplasmic binding protein, putative compare
Pf6N2E2_3351 -0.5 -1.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3834 -0.5 -2.9 Lipoprotein NlpD compare
Pf6N2E2_3338 -0.5 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_1081 -0.5 -1.0 probable membrane protein YPO3302 compare
Pf6N2E2_4630 -0.5 -2.0 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_2927 -0.5 -0.8 Putative signal peptide protein compare
Pf6N2E2_4733 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_2985 -0.5 -1.7 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4454 -0.5 -2.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2973 -0.5 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_423 -0.5 -1.5 Putative phosphatase YfbT compare
Pf6N2E2_2870 -0.5 -2.0 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_4083 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_6064 -0.5 -2.2 2-methylaconitate isomerase compare
Pf6N2E2_5807 -0.5 -2.3 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
Pf6N2E2_391 -0.5 -2.2 hypothetical protein compare
Pf6N2E2_5044 -0.5 -1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3973 -0.5 -1.7 hypothetical protein compare
Pf6N2E2_1281 -0.5 -1.8 ATPase involved in DNA repair compare
Pf6N2E2_1543 -0.5 -2.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_2487 -0.5 -0.7 FIG00956090: hypothetical protein compare
Pf6N2E2_2473 -0.5 -0.8 Major outer membrane lipoprotein I compare
Pf6N2E2_480 -0.5 -3.8 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) compare
Pf6N2E2_1444 -0.5 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_5739 -0.5 -0.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1446 -0.5 -2.1 Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10) compare
Pf6N2E2_2317 -0.5 -2.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_4372 -0.5 -1.7 FIG00460773: hypothetical protein compare
Pf6N2E2_5877 -0.5 -1.2 Phosphohistidine phosphatase SixA compare
Pf6N2E2_1385 -0.5 -0.8 FIG00956261: hypothetical protein compare
Pf6N2E2_3198 -0.5 -1.0 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5671 -0.5 -1.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4416 -0.5 -1.3 Tyrosine recombinase XerC compare
Pf6N2E2_3820 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_3240 -0.5 -1.0 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_502 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_4317 -0.5 -1.2 FIG00964469: hypothetical protein compare
Pf6N2E2_4160 -0.5 -0.8 Cytochrome c5 compare
Pf6N2E2_2114 -0.5 -1.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2900 -0.5 -1.8 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_5420 -0.5 -2.9 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Pf6N2E2_441 -0.5 -1.2 FIG00958773: hypothetical protein compare
Pf6N2E2_2285 -0.5 -1.0 FIG00954079: hypothetical protein compare
Pf6N2E2_156 -0.5 -1.2 Carbon storage regulator compare
Pf6N2E2_3100 -0.5 -1.3 FIG00953063: hypothetical protein compare
Pf6N2E2_5328 -0.5 -1.9 FIG00958649: hypothetical protein compare
Pf6N2E2_6099 -0.5 -0.8 tRNA-Glu-TTC compare
Pf6N2E2_3533 -0.5 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_3537 -0.5 -2.4 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source casamino acids across organisms