Experiment set1IT030 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_22080 -5.6 -9.3 isocitrate lyase compare
AO356_14435 -5.5 -3.8 anthranilate phosphoribosyltransferase compare
AO356_05640 -5.4 -3.7 LuxR family transcriptional regulator compare
AO356_21440 -5.3 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -5.1 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
AO356_19225 -5.0 -11.1 histidine kinase conserved
AO356_21400 -5.0 -6.8 isopropylmalate isomerase compare
AO356_21415 -4.9 -10.9 3-isopropylmalate dehydrogenase compare
AO356_00880 -4.9 -3.4 integration host factor subunit alpha compare
AO356_12525 -4.9 -7.4 acetylglutamate kinase compare
AO356_14100 -4.8 -7.3 malate synthase G compare
AO356_18275 -4.7 -11.0 ornithine carbamoyltransferase compare
AO356_13405 -4.7 -8.5 methionine biosynthesis protein MetW compare
AO356_12020 -4.5 -10.6 pyruvate carboxylase subunit A compare
AO356_18695 -4.5 -21.2 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) conserved
AO356_13410 -4.5 -10.7 homoserine O-acetyltransferase compare
AO356_10300 -4.4 -7.9 3-phosphoglycerate dehydrogenase compare
AO356_09520 -4.4 -3.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_12025 -4.4 -15.0 pyruvate carboxylase subunit B compare
AO356_18325 -4.3 -10.4 argininosuccinate synthase compare
AO356_06965 -4.2 -7.1 histidinol dehydrogenase compare
AO356_10915 -4.2 -10.0 tryptophan synthase subunit beta compare
AO356_10910 -4.2 -7.0 tryptophan synthase subunit alpha compare
AO356_09375 -4.2 -21.4 glutamate synthase compare
AO356_19425 -4.2 -2.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_14420 -4.1 -14.2 anthranilate synthase compare
AO356_13085 -4.1 -9.2 N-acetylglutamate synthase compare
AO356_09525 -4.1 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_06970 -4.1 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21405 -4.1 -4.8 3-isopropylmalate dehydratase compare
AO356_16170 -4.1 -8.3 acetolactate synthase 3 catalytic subunit compare
AO356_16175 -4.1 -7.3 acetolactate synthase 3 regulatory subunit compare
AO356_16075 -4.1 -3.9 Fis family transcriptional regulator compare
AO356_10350 -4.1 -13.2 phosphoenolpyruvate-protein phosphotransferase compare
AO356_00555 -4.0 -10.3 sulfite reductase compare
AO356_09815 -4.0 -5.5 imidazoleglycerol-phosphate dehydratase compare
AO356_22200 -4.0 -8.1 sirohydrochlorin ferrochelatase compare
AO356_14440 -4.0 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_16180 -4.0 -14.1 ketol-acid reductoisomerase compare
AO356_19045 -3.9 -11.6 chemotaxis protein CheY compare
AO356_13605 -3.9 -7.4 5,10-methylenetetrahydrofolate reductase compare
AO356_00560 -3.9 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09370 -3.9 -11.8 glutamate synthase compare
AO356_00355 -3.8 -9.7 chemotaxis protein CheY compare
AO356_08735 -3.8 -13.5 phosphoserine phosphatase compare
AO356_14335 -3.8 -4.4 rRNA methyltransferase compare
AO356_07055 -3.7 -3.6 phosphocarrier protein HPr compare
AO356_02250 -3.7 -7.9 pyridine nucleotide-disulfide oxidoreductase compare
AO356_11145 -3.7 -12.8 carbonate dehydratase conserved
AO356_09810 -3.7 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
AO356_02265 -3.7 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_15815 -3.7 -2.5 gamma-glutamyl kinase compare
AO356_19060 -3.6 -15.3 (p)ppGpp synthetase compare
AO356_16600 -3.6 -2.4 malate:quinone oxidoreductase compare
AO356_08585 -3.6 -3.5 50S ribosomal protein L9 compare
AO356_19795 -3.6 -2.5 glycerol-3-phosphate dehydrogenase compare
AO356_02315 -3.5 -4.7 DNA topoisomerase I compare
AO356_12780 -3.5 -6.6 argininosuccinate lyase compare
AO356_21465 -3.5 -4.7 amidophosphoribosyltransferase compare
AO356_20155 -3.5 -7.1 phosphate acyltransferase compare
AO356_21470 -3.4 -7.0 O-succinylhomoserine sulfhydrylase compare
AO356_19085 -3.4 -7.9 phosphoribosylglycinamide formyltransferase compare
AO356_14430 -3.4 -8.9 anthranilate synthase compare
AO356_12015 -3.4 -12.6 LysR family transcriptional regulator compare
AO356_07005 -3.3 -3.2 ABC transporter ATP-binding protein compare
AO356_09800 -3.3 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_19090 -3.3 -2.2 phosphoribosylaminoimidazole synthetase compare
AO356_07495 -3.3 -3.8 molecular chaperone DnaJ compare
AO356_05995 -3.3 -3.8 hypothetical protein compare
AO356_06415 -3.2 -5.7 cytochrome C assembly protein compare
AO356_06550 -3.2 -8.6 2-isopropylmalate synthase compare
AO356_09780 -3.2 -5.2 peptidase S41 compare
AO356_08905 -3.2 -2.2 glycosyl transferase compare
AO356_13250 -3.2 -9.9 dihydroxy-acid dehydratase compare
AO356_20830 -3.2 -3.7 phosphoadenosine phosphosulfate reductase compare
AO356_21330 -3.1 -9.5 aromatic amino acid aminotransferase compare
AO356_12715 -3.1 -5.1 hypothetical protein compare
AO356_17520 -3.1 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_12895 -3.0 -19.0 polyphosphate kinase compare
AO356_03405 -3.0 -4.5 serine acetyltransferase compare
AO356_11010 -3.0 -13.0 hypothetical protein compare
AO356_06685 -3.0 -2.0 preprotein translocase subunit YajC compare
AO356_16955 -3.0 -5.2 disulfide bond formation protein B compare
AO356_10340 -2.9 -12.8 phosphoserine phosphatase compare
AO356_09425 -2.9 -8.5 malate dehydrogenase compare
AO356_15235 -2.9 -7.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase conserved
AO356_18245 -2.9 -7.5 DeoR family transcriptional regulator compare
AO356_22795 -2.8 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_09765 -2.8 -3.7 sulfurtransferase compare
AO356_12520 -2.7 -2.6 orotate phosphoribosyltransferase compare
AO356_16095 -2.7 -9.2 molecular chaperone DnaK compare
AO356_11025 -2.7 -4.8 transcriptional regulator PhoU compare
AO356_16485 -2.7 -7.8 hypothetical protein compare
AO356_03435 -2.7 -4.0 integration host factor subunit beta compare
AO356_02175 -2.7 -7.2 transaldolase compare
AO356_01750 -2.7 -3.1 ATP-dependent Clp protease proteolytic subunit compare
AO356_07545 -2.7 -14.1 transcriptional regulator PdhR compare
AO356_02290 -2.6 -3.1 TetR family transcriptional regulator compare
AO356_01745 -2.6 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_25750 -2.6 -3.3 GntR family transcriptional regulator compare
AO356_28695 -2.6 -3.6 IclR family transcriptional regulator compare
AO356_02205 -2.6 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_04970 -2.6 -8.1 aspartate-semialdehyde dehydrogenase compare
AO356_10875 -2.6 -18.4 acetyl-CoA hydrolase conserved
AO356_18805 -2.6 -1.7 magnesium transporter compare
AO356_14305 -2.5 -16.9 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_09460 -2.5 -5.5 ATP-dependent protease ATP-binding subunit HslU compare
AO356_15165 -2.5 -2.9 protein cII compare
AO356_15395 -2.5 -5.8 magnesium transporter compare
AO356_05165 -2.5 -12.7 transcriptional regulator compare
AO356_07480 -2.5 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_14310 -2.4 -13.9 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_16450 -2.4 -3.9 GTP-binding protein compare
AO356_16060 -2.4 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_14315 -2.4 -17.8 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_03095 -2.4 -7.9 protease HtpX compare
AO356_10185 -2.3 -7.5 glutamate--cysteine ligase compare
AO356_24540 -2.3 -3.0 serine/threonine protein phosphatase conserved
AO356_10170 -2.3 -2.6 chemotaxis protein CheY compare
AO356_18730 -2.3 -8.7 arginine N-succinyltransferase compare
AO356_24485 -2.3 -3.8 SAM-dependent methyltransferase compare
AO356_16185 -2.3 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_08670 -2.3 -2.6 N-acetylmuramoyl-L-alanine amidase compare
AO356_17020 -2.2 -5.5 cytochrome D ubiquinol oxidase subunit III compare
AO356_10140 -2.2 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_11270 -2.2 -8.1 potassium transporter peripheral membrane component compare
AO356_08640 -2.2 -3.6 membrane protease HflC compare
AO356_29835 -2.2 -3.0 LuxR family transcriptional regulator compare
AO356_07390 -2.2 -2.2 polyribonucleotide nucleotidyltransferase compare
AO356_16080 -2.2 -11.9 ATPase compare
AO356_19050 -2.2 -3.1 cysteine synthase compare
AO356_10345 -2.1 -5.7 RNA pyrophosphohydrolase compare
AO356_03415 -2.1 -8.4 oxidoreductase compare
AO356_07020 -2.1 -1.8 LPS export ABC transporter periplasmic protein LptC compare
AO356_13415 -2.0 -3.3 hypothetical protein compare
AO356_00130 -2.0 -5.1 XRE family transcriptional regulator compare
AO356_14135 -2.0 -11.6 biotin synthase compare
AO356_22970 -2.0 -5.3 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) compare
AO356_19335 -2.0 -11.8 peptidase S41 compare
AO356_05885 -2.0 -10.3 RNA polymerase sigma factor RpoS compare
AO356_03400 -2.0 -5.6 aminotransferase DegT compare
AO356_17890 -2.0 -2.6 H-NS histone compare
AO356_03995 -1.9 -9.7 potassium transporter TrkH compare
AO356_17035 -1.9 -5.8 ATPase compare
AO356_11395 -1.9 -8.5 hypothetical protein compare
AO356_07540 -1.9 -2.2 SsrA-binding protein compare
AO356_16870 -1.9 -9.3 benzoate transporter compare
AO356_10920 -1.9 -8.3 LysR family transcriptional regulator compare
AO356_15420 -1.9 -4.0 hypothetical protein compare
AO356_13475 -1.9 -6.3 glutathione synthetase compare
AO356_24550 -1.9 -2.4 hypothetical protein compare
AO356_17985 -1.9 -5.9 cold-shock protein compare
AO356_04560 -1.9 -2.4 serine peptidase compare
AO356_17245 -1.8 -7.4 hypothetical protein conserved
AO356_13685 -1.8 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_02875 -1.8 -5.3 peroxiredoxin compare
AO356_02335 -1.8 -4.1 hypothetical protein compare
AO356_09540 -1.8 -1.2 twin-arginine protein translocation system subunit TatC compare
AO356_17235 -1.8 -10.6 fusaric acid resistance protein conserved
AO356_02905 -1.8 -8.7 amino acid ABC transporter substrate-binding protein compare
AO356_08645 -1.7 -3.6 hypothetical protein compare
AO356_24845 -1.7 -2.4 ATPase compare
AO356_11315 -1.7 -1.6 shikimate dehydrogenase compare
AO356_14155 -1.7 -7.3 dethiobiotin synthetase compare
AO356_08215 -1.7 -6.9 tRNA-dihydrouridine synthase B compare
AO356_13425 -1.7 -3.3 hypothetical protein compare
AO356_17230 -1.7 -10.0 RND transporter conserved
AO356_14150 -1.7 -7.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO356_22980 -1.7 -3.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO356_20475 -1.7 -2.4 hypothetical protein compare
AO356_06385 -1.7 -3.4 recombinase XerD compare
AO356_08895 -1.7 -1.6 GlcNAc-PI de-N-acetylase compare
AO356_20175 -1.7 -1.1 3-oxoacyl-ACP synthase compare
AO356_07915 -1.7 -2.4 exodeoxyribonuclease V subunit beta compare
AO356_27585 -1.7 -4.0 AcrR family transcriptional regulator compare
AO356_07910 -1.7 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_17225 -1.7 -7.0 LysR family transcriptional regulator conserved
AO356_12945 -1.6 -4.7 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_08955 -1.6 -7.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_12990 -1.6 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
AO356_30345 -1.6 -4.7 IclR family transcriptional regulator compare
AO356_09150 -1.6 -2.1 acyl carrier protein compare
AO356_04810 -1.6 -5.9 phospholipase compare
AO356_23945 -1.6 -2.2 hypothetical protein compare
AO356_04575 -1.6 -8.2 RNA polymerase subunit sigma compare
AO356_11610 -1.6 -1.8 glycerol acyltransferase compare
AO356_16085 -1.6 -4.6 MFS transporter compare
AO356_02815 -1.5 -4.4 ribonuclease activity regulator protein RraA conserved
AO356_08660 -1.5 -6.5 tRNA dimethylallyltransferase compare
AO356_02485 -1.5 -3.5 transcriptional regulator compare
AO356_11585 -1.5 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_17950 -1.5 -6.6 histidine kinase compare
AO356_14295 -1.5 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_21460 -1.5 -2.7 colicin V production CvpA compare
AO356_06005 -1.5 -3.6 zinc metallopeptidase RseP compare
AO356_17240 -1.5 -6.0 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO356_17230, AO356_17245, and AO356_17235) (from data) conserved
AO356_14140 -1.4 -9.1 8-amino-7-oxononanoate synthase compare
AO356_19420 -1.4 -1.6 septum formation inhibitor compare
AO356_14145 -1.4 -4.2 transporter compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N2C3

For carbon source Potassium acetate across organisms