Experiment set1IT030 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Potassium acetate carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_03855 +2.4 20.7 AAA family ATPase compare
AO356_01525 +2.2 13.7 arginine N-succinyltransferase compare
AO356_01520 +2.0 9.2 porin compare
AO356_22125 +2.0 12.4 isocitrate dehydrogenase compare
AO356_01505 +2.0 9.0 isochorismatase compare
AO356_01530 +1.9 9.4 arginine N-succinyltransferase compare
AO356_03760 +1.8 10.5 flagellar biosynthetic protein FliR compare
AO356_18250 +1.8 15.7 glycerol kinase compare
AO356_03835 +1.7 13.3 flagellar M-ring protein FliF compare
AO356_03775 +1.7 3.9 flagellar assembly protein FliO compare
AO356_08325 +1.7 3.8 predicted copper homeostasis protein (from data) compare
AO356_03770 +1.7 7.7 flagellar biosynthesis protein flip compare
AO356_03765 +1.7 10.2 flagellar biosynthetic protein FliQ compare
AO356_03820 +1.6 14.2 flagellar protein export ATPase FliI compare
AO356_03825 +1.6 7.0 flagellar assembly protein FliH compare
AO356_03815 +1.5 8.6 flagellar biogenesis protein compare
AO356_18920 +1.5 11.5 flagellar basal-body rod protein FlgC compare
AO356_18930 +1.5 13.2 flagellar biosynthesis protein FlgE compare
AO356_11420 +1.5 10.8 histidine kinase compare
AO356_12005 +1.4 12.1 transcriptional regulator compare
AO356_18255 +1.4 10.4 glycerol uptake facilitator GlpF compare
AO356_03745 +1.4 11.8 flagellar biosynthesis protein FlhA compare
AO356_18900 +1.4 9.6 flagellar biosynthesis protein FlgA compare
AO356_11400 +1.4 9.6 glutamate:protein symporter compare
AO356_03930 +1.4 4.9 flagellar biosynthesis protein FlgF compare
AO356_03840 +1.4 9.0 flagellar hook-basal body protein FliE compare
AO356_03920 +1.4 9.8 flagellar basal body L-ring protein compare
AO356_20285 +1.4 4.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO356_18915 +1.3 6.8 flagellar biosynthesis protein FlgB compare
AO356_03795 +1.3 10.3 flagellar hook-length control protein compare
AO356_03830 +1.3 8.6 flagellar motor switch protein FliG compare
AO356_03730 +1.3 9.8 flagellar biosynthesis sigma factor compare
AO356_03785 +1.3 10.3 flagellar motor switch protein FliM compare
AO356_18925 +1.2 7.2 flagellar biosynthesis protein FlgD compare
AO356_03780 +1.2 3.0 flagellar motor switch protein compare
AO356_03755 +1.2 9.0 flagellar biosynthetic protein FlhB compare
AO356_03910 +1.2 8.9 flagellar biosynthesis protein FlgJ compare
AO356_08320 +1.2 5.4 copper resistance protein CopZ compare
AO356_03925 +1.2 6.7 flagellar basal-body rod protein FlgG compare
AO356_01500 +1.2 2.8 RpiR family transcriptional regulator compare
AO356_02410 +1.1 5.6 cytochrome C oxidase Cbb3 compare
AO356_03865 +1.1 6.6 flagellar export chaperone FliS compare
AO356_01510 +1.1 3.1 glutamine synthetase compare
AO356_02405 +1.1 8.9 cytochrome C oxidase Cbb3 compare
AO356_03680 +1.1 9.0 chemotaxis protein compare
AO356_03915 +1.1 6.5 flagellar biosynthesis protein FlgI compare
AO356_08330 +1.1 9.4 TonB-dependent receptor compare
AO356_02005 +1.1 2.6 hypothetical protein compare
AO356_04035 +1.1 9.1 hypothetical protein compare
AO356_04565 +1.0 6.8 RNA polymerase subunit sigma compare
AO356_25720 +1.0 1.8 polyamine ABC transporter permease compare
AO356_13195 +1.0 8.5 thiol-disulfide isomerase compare
AO356_26180 +1.0 3.2 hypothetical protein compare
AO356_28090 +1.0 1.7 ABC transporter ATP-binding protein compare
AO356_05100 +1.0 8.1 long-chain fatty acid--CoA ligase compare
AO356_19515 +1.0 1.8 hypothetical protein compare
AO356_03180 +1.0 3.1 CysB family transcriptional regulator compare
AO356_02420 +1.0 5.2 cytochrome C oxidase Cbb3 compare
AO356_00170 +1.0 2.0 lytic transglycosylase compare
AO356_20850 +1.0 4.9 hypothetical protein compare
AO356_15925 +1.0 4.6 ribosomal large subunit pseudouridine synthase D compare
AO356_07200 +0.9 8.2 ABC transporter ATP-binding protein compare
AO356_07110 +0.9 4.6 ribonuclease G compare
AO356_28610 +0.9 1.8 AraC family transcriptional regulator compare
AO356_18475 +0.9 1.9 chemotaxis protein CheY compare
AO356_03790 +0.9 5.2 flagellar basal body protein FliL compare
AO356_03495 +0.9 3.1 phosphoglycolate phosphatase compare
AO356_21430 +0.9 6.5 peptidoglycan-binding protein compare
AO356_05540 +0.9 2.5 cold-shock protein compare
AO356_03845 +0.9 4.7 Fis family transcriptional regulator compare
AO356_15860 +0.8 1.1 general secretion pathway protein GspH compare
AO356_02460 +0.8 0.7 hypothetical protein compare
AO356_11155 +0.8 6.3 hypothetical protein compare
AO356_24740 +0.8 1.8 RNA polymerase subunit sigma-24 compare
AO356_11205 +0.8 5.1 copper-binding protein compare
AO356_09855 +0.8 5.7 hypothetical protein compare
AO356_02325 +0.8 2.1 3-ketoacyl-CoA thiolase compare
AO356_18890 +0.8 1.5 flagellar biosynthesis protein FlgN compare
AO356_00960 +0.8 4.1 ABC transporter permease compare
AO356_25830 +0.8 2.1 DNA repair protein compare
AO356_21795 +0.8 1.9 PBS lyase compare
AO356_13190 +0.8 7.0 penicillin amidase compare
AO356_02465 +0.8 1.1 carbonate dehydratase compare
AO356_12500 +0.7 5.2 ribonuclease PH compare
AO356_02305 +0.7 2.1 hypothetical protein compare
AO356_12995 +0.7 4.5 cell division protein ZapA compare
AO356_03850 +0.7 4.3 histidine kinase compare
AO356_22325 +0.7 2.9 reactive intermediate/imine deaminase compare
AO356_13740 +0.7 5.6 acyltransferase compare
AO356_08705 +0.7 4.7 flagellar motor protein MotB compare
AO356_29315 +0.7 1.6 acyl-CoA dehydrogenase compare
AO356_13770 +0.7 3.5 ATP-dependent RNA helicase compare
AO356_05645 +0.7 3.8 hypothetical protein compare
AO356_29070 +0.7 3.1 succinate-semialdehyde dehydrogenase compare
AO356_04580 +0.7 5.0 L-aspartate oxidase compare
AO356_20270 +0.7 3.9 GNAT family acetyltransferase compare
AO356_18000 +0.7 1.1 FmdB family transcriptional regulator compare
AO356_19300 +0.7 4.9 peptidylprolyl isomerase compare
AO356_25045 +0.7 1.6 protein nirG compare
AO356_18150 +0.7 2.5 hypothetical protein compare
AO356_04235 +0.6 3.1 LysR family transcriptional regulator compare
AO356_14790 +0.6 4.3 MFS transporter compare
AO356_19120 +0.6 3.5 peptidase P60 compare
AO356_16735 +0.6 2.6 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO356_19730 +0.6 1.3 hypothetical protein compare
AO356_24125 +0.6 2.1 hypothetical protein compare
AO356_19265 +0.6 2.5 recombination-associated protein RdgC compare
AO356_04535 +0.6 3.6 glycine cleavage system protein R compare
AO356_29100 +0.6 1.4 epimerase compare
AO356_19240 +0.6 1.1 cupin compare
AO356_27760 +0.6 0.8 LysR family transcriptional regulator compare
AO356_06210 +0.6 3.9 hypothetical protein compare
AO356_08710 +0.6 5.0 flagellar motor stator protein MotA compare
AO356_22145 +0.6 3.9 ATP-dependent Clp protease adaptor ClpS compare
AO356_20220 +0.6 4.1 hypothetical protein compare
AO356_00395 +0.6 3.2 peptide ABC transporter permease compare
AO356_26875 +0.6 1.8 alcohol dehydrogenase compare
AO356_16375 +0.6 2.6 hypothetical protein compare
AO356_03880 +0.6 3.5 flagellin compare
AO356_09380 +0.6 4.9 cell division protein compare
AO356_23500 +0.6 3.9 TetR family transcriptional regulator compare
AO356_19315 +0.6 1.5 hypothetical protein compare
AO356_03905 +0.6 3.7 flagellar biosynthesis protein FlgK compare
AO356_24460 +0.6 3.1 microcin ABC transporter permease compare
AO356_25890 +0.6 2.7 enoyl-CoA hydratase compare
AO356_00490 +0.6 3.9 phospholipase compare
AO356_21320 +0.6 0.9 tRNA-Asn compare
AO356_28085 +0.6 3.4 hypothetical protein compare
AO356_27890 +0.6 2.0 nitrilase compare
AO356_00915 +0.6 3.6 hypothetical protein compare
AO356_03900 +0.6 4.6 flagellar biosynthesis protein FlgL compare
AO356_13135 +0.6 4.7 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO356_20185 +0.6 4.0 aminodeoxychorismate lyase compare
AO356_03685 +0.6 3.3 chemotaxis protein CheW compare
AO356_20345 +0.6 4.4 GntR family transcriptional regulator compare
AO356_12690 +0.5 3.8 histidine kinase compare
AO356_00430 +0.5 2.6 twitching motility protein PilT compare
AO356_09165 +0.5 1.7 glycosyl transferase compare
AO356_28845 +0.5 1.3 ferrichrome ABC transporter compare
AO356_22260 +0.5 1.1 isochorismatase compare
AO356_10575 +0.5 1.6 tryptophan synthase subunit beta compare
AO356_08400 +0.5 1.6 chaperone modulatory protein CbpM compare
AO356_08375 +0.5 1.3 acetyltransferase compare
AO356_07300 +0.5 2.6 choline ABC transporter permease compare
AO356_27400 +0.5 1.7 1,2-oxophytodienoate reductase compare
AO356_13565 +0.5 2.5 16S rRNA methyltransferase compare
AO356_15460 +0.5 1.2 hypothetical protein compare
AO356_05830 +0.5 1.5 phage tail protein compare
AO356_29730 +0.5 1.0 MarR family transcriptional regulator compare
AO356_05870 +0.5 2.9 hypothetical protein compare
AO356_21240 +0.5 2.1 diaminopimelate epimerase compare
AO356_11035 +0.5 3.6 phosphate ABC transporter permease compare
AO356_07210 +0.5 1.2 histidine kinase compare
AO356_14500 +0.5 3.3 anhydro-N-acetylmuramic acid kinase compare
AO356_24455 +0.5 3.0 ABC transporter permease compare
AO356_16895 +0.5 3.7 ribosomal subunit interface protein compare
AO356_05850 +0.5 2.1 hypothetical protein compare
AO356_11040 +0.5 4.6 phosphate ABC transporter permease compare
AO356_16070 +0.5 2.5 poly(A) polymerase compare
AO356_25795 +0.5 1.1 transglutaminase compare
AO356_16745 +0.5 3.2 dihydrofolate reductase compare
AO356_28990 +0.5 1.8 SfnB family sulfur acquisition oxidoreductase compare
AO356_01515 +0.5 1.4 N-formylglutamate amidohydrolase compare
AO356_09155 +0.5 2.9 hypothetical protein compare
AO356_20265 +0.5 1.7 hypothetical protein compare
AO356_19080 +0.5 3.2 dehydrogenase compare
AO356_29735 +0.5 1.6 hypothetical protein compare
AO356_18320 +0.5 3.4 hypothetical protein compare
AO356_29190 +0.5 1.9 3-demethylubiquinone-9 3-methyltransferase compare
AO356_01565 +0.5 2.0 MerR family transcriptional regulator compare
AO356_12610 +0.5 0.6 Fe-S oxidoreductase compare
AO356_22955 +0.5 1.4 ArsR family transcriptional regulator compare
AO356_07790 +0.5 1.8 permease DsdX compare
AO356_28975 +0.5 1.8 alkanesulfonate monooxygenase compare
AO356_02490 +0.5 1.8 adenine phosphoribosyltransferase compare
AO356_16380 +0.5 3.5 hypothetical protein compare
AO356_03725 +0.5 1.5 histidine kinase compare
AO356_03595 +0.5 1.0 carbon storage regulator compare
AO356_29935 +0.5 1.9 NADPH:quinone oxidoreductase compare
AO356_06690 +0.5 1.1 queuine tRNA-ribosyltransferase compare
AO356_27640 +0.5 1.3 chemotaxis protein CheB compare
AO356_10770 +0.5 3.2 MFS transporter compare
AO356_26915 +0.4 1.4 Fe-S oxidoreductase compare
AO356_05225 +0.4 2.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_13710 +0.4 1.5 fructose-bisphosphate aldolase compare
AO356_16560 +0.4 3.0 uracil transporter compare
AO356_07375 +0.4 1.8 dephospho-CoA kinase compare
AO356_24380 +0.4 1.5 hydroxyacid dehydrogenase compare
AO356_19260 +0.4 2.0 sodium transporter compare
AO356_03480 +0.4 3.2 methylthioribose-1-phosphate isomerase compare
AO356_23175 +0.4 1.9 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
AO356_19655 +0.4 2.2 glycine/betaine ABC transporter substrate-binding protein compare
AO356_05545 +0.4 3.2 peptide chain release factor RF-3 compare
AO356_19310 +0.4 2.6 Cro/Cl family transcriptional regulator compare
AO356_12965 +0.4 3.0 flagellar basal body protein FliL compare
AO356_15175 +0.4 1.5 hypothetical protein compare
AO356_25835 +0.4 1.4 hypothetical protein compare
AO356_23200 +0.4 2.0 rhizopine-binding protein compare
AO356_18860 +0.4 1.6 hypothetical protein compare
AO356_07605 +0.4 2.6 lactam utilization protein LamB compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N2C3

For carbon source Potassium acetate across organisms