Experiment set1IT030 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5665 -3.9 -4.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2880 -3.6 -11.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1307 -3.6 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_6 -3.5 -5.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2303 -3.4 -13.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_15 -3.4 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1067 -3.3 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2282 -3.2 -8.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1534 -3.2 -18.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_742 -3.2 -7.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1624 -3.2 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_5666 -3.2 -3.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1533 -3.1 -7.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2547 -3.1 -3.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2548 -3.0 -7.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1831 -3.0 -11.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1434 -2.9 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1830 -2.9 -8.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2549 -2.9 -9.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2384 -2.9 -9.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2879 -2.9 -7.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2337 -2.8 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2545 -2.8 -13.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2338 -2.8 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4065 -2.8 -7.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_847 -2.8 -9.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1565 -2.7 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_762 -2.7 -6.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1626 -2.7 -7.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2272 -2.7 -4.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_12 -2.6 -6.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_350 -2.5 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1617 -2.5 -7.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3506 -2.5 -7.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2112 -2.5 -13.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1627 -2.4 -5.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3153 -2.4 -2.8 hypothetical protein compare
Pf1N1B4_2878 -2.3 -7.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3518 -2.3 -3.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1408 -2.3 -3.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1 -2.2 -3.7 Colicin V production protein compare
Pf1N1B4_1315 -2.2 -8.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3487 -2.1 -7.2 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate conserved
Pf1N1B4_578 -2.0 -2.7 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_669 -1.9 -4.0 INTEGRAL MEMBRANE PROTEIN (Rhomboid family) compare
Pf1N1B4_5619 -1.8 -3.9 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_2858 -1.8 -9.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3833 -1.8 -6.7 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2280 -1.8 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1975 -1.8 -3.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_1057 -1.7 -3.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2939 -1.7 -4.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_3812 -1.7 -6.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_291 -1.7 -6.3 Major outer membrane lipoprotein I compare
Pf1N1B4_3111 -1.6 -2.3 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_327 -1.5 -2.0 hypothetical protein compare
Pf1N1B4_3917 -1.5 -3.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_3697 -1.5 -6.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1653 -1.5 -5.9 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_1906 -1.4 -3.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1545 -1.4 -7.4 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_304 -1.4 -2.3 Deoxyribonuclease TatD compare
Pf1N1B4_1535 -1.4 -3.0 hypothetical protein compare
Pf1N1B4_1666 -1.4 -4.6 C4-dicarboxylate transport transcriptional regulatory protein conserved
Pf1N1B4_683 -1.3 -2.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_644 -1.3 -2.0 Cold shock protein CspC compare
Pf1N1B4_1113 -1.3 -4.7 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1625 -1.3 -3.2 FIG00956267: hypothetical protein compare
Pf1N1B4_2247 -1.3 -2.4 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_2706 -1.3 -2.6 FIG00954871: hypothetical protein compare
Pf1N1B4_980 -1.3 -2.3 hypothetical protein compare
Pf1N1B4_1611 -1.2 -4.0 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1234 -1.2 -3.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_652 -1.2 -6.3 Sensory box histidine kinase compare
Pf1N1B4_292 -1.2 -10.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_5995 -1.2 -2.0 Transporter, MFS superfamily compare
Pf1N1B4_2969 -1.2 -7.7 ATPase, AFG1 family compare
Pf1N1B4_1636 -1.2 -1.5 FIG00954739: hypothetical protein compare
Pf1N1B4_3795 -1.2 -2.1 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4029 -1.2 -2.8 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1683 -1.1 -1.7 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4870 -1.1 -1.6 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_3591 -1.1 -5.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_35 -1.1 -2.4 hypothetical protein compare
Pf1N1B4_1870 -1.1 -1.9 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_1544 -1.1 -5.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_5760 -1.1 -2.7 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_2169 -1.1 -2.1 FIG00953808: hypothetical protein compare
Pf1N1B4_4960 -1.1 -1.7 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf1N1B4_74 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_348 -1.0 -3.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2433 -1.0 -2.1 FIG00953108: hypothetical protein compare
Pf1N1B4_3685 -1.0 -3.0 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3241 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_2209 -1.0 -5.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4343 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_358 -1.0 -4.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_4523 -1.0 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3081 -1.0 -8.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1827 -1.0 -2.9 FIG00953482: hypothetical protein compare
Pf1N1B4_5059 -1.0 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_2807 -1.0 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_1370 -1.0 -1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_2917 -1.0 -5.1 FIG140336: TPR domain protein compare
Pf1N1B4_138 -1.0 -1.6 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_3325 -1.0 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_384 -1.0 -1.7 proteinase inhibitor compare
Pf1N1B4_3142 -1.0 -2.5 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_4039 -1.0 -3.9 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4612 -1.0 -1.8 FIG00954117: hypothetical protein compare
Pf1N1B4_883 -0.9 -1.5 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5659 -0.9 -5.7 NfuA Fe-S protein maturation compare
Pf1N1B4_2352 -0.9 -3.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_769 -0.9 -3.8 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4485 -0.9 -1.2 membrane protein, putative compare
Pf1N1B4_2912 -0.9 -1.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_5815 -0.9 -2.3 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_289 -0.9 -7.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_3590 -0.9 -3.0 hypothetical protein compare
Pf1N1B4_1294 -0.9 -1.8 VgrG protein compare
Pf1N1B4_4257 -0.9 -1.6 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2949 -0.9 -1.6 FIG00956396: hypothetical protein compare
Pf1N1B4_4729 -0.9 -1.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_4830 -0.9 -1.8 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_5383 -0.9 -5.8 hypothetical protein compare
Pf1N1B4_890 -0.9 -2.0 DNA recombination and repair protein RecO compare
Pf1N1B4_4385 -0.9 -1.8 Gfa-like protein compare
Pf1N1B4_3546 -0.9 -1.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_27 -0.9 -2.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_1444 -0.9 -3.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf1N1B4_4897 -0.9 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_5512 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_2067 -0.9 -2.3 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_3927 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_962 -0.9 -5.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_3006 -0.8 -3.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf1N1B4_3264 -0.8 -2.4 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_701 -0.8 -2.8 FIG00954094: hypothetical protein compare
Pf1N1B4_1566 -0.8 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5574 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_2210 -0.8 -1.1 Glutamate transport ATP-binding protein compare
Pf1N1B4_3656 -0.8 -1.6 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_175 -0.8 -1.4 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_2859 -0.8 -5.7 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1835 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4603 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_2366 -0.8 -2.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_5146 -0.8 -1.5 Chromosome initiation inhibitor compare
Pf1N1B4_2479 -0.8 -1.6 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_1916 -0.8 -1.1 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_2008 -0.8 -4.4 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_2322 -0.8 -1.7 FIG015547: peptidase, M16 family compare
Pf1N1B4_1652 -0.8 -4.4 transcriptional regulator, LysR family compare
Pf1N1B4_5420 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1936 -0.8 -2.9 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_1329 -0.8 -3.1 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1180 -0.8 -1.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3494 -0.8 -1.9 Flavoprotein WrbA compare
Pf1N1B4_275 -0.8 -1.3 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_5899 -0.8 -1.5 FIG00954746: hypothetical protein compare
Pf1N1B4_5151 -0.8 -1.8 FIG002283: Isochorismatase family protein compare
Pf1N1B4_5509 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_3143 -0.8 -1.9 RecA protein compare
Pf1N1B4_5333 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_2736 -0.8 -1.8 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_4972 -0.8 -1.5 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_2224 -0.8 -1.4 FIG00953390: hypothetical protein compare
Pf1N1B4_3878 -0.8 -3.0 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_4445 -0.8 -2.4 acetyltransferase, GNAT family compare
Pf1N1B4_1619 -0.8 -4.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_76 -0.7 -1.7 ATP binding protein compare
Pf1N1B4_2009 -0.7 -2.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3507 -0.7 -5.0 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf1N1B4_960 -0.7 -4.7 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_5067 -0.7 -1.8 PUTATIVE TRANSFERASE PROTEIN( EC:2.- ) compare
Pf1N1B4_574 -0.7 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_2940 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_3742 -0.7 -1.5 Oxidoreductase, zinc-binding compare
Pf1N1B4_5661 -0.7 -3.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_208 -0.7 -2.0 Two-component system response regulator QseB compare
Pf1N1B4_5330 -0.7 -0.9 hypothetical protein compare
Pf1N1B4_5829 -0.7 -1.4 FIG005107: hypothetical protein compare
Pf1N1B4_5674 -0.7 -1.8 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_2776 -0.7 -1.5 Transcriptional regulator, GntR family compare
Pf1N1B4_2885 -0.7 -3.1 Paraquat-inducible protein A compare
Pf1N1B4_899 -0.7 -0.9 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2526 -0.7 -5.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4537 -0.7 -2.1 Uncharacterized protein ImpC compare
Pf1N1B4_2517 -0.7 -2.0 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf1N1B4_4673 -0.7 -1.9 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_4038 -0.7 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_3538 -0.7 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_2377 -0.7 -3.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4957 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf1N1B4_4946 -0.7 -1.6 putative aminotransferase compare
Pf1N1B4_2872 -0.7 -4.5 FIG00955330: hypothetical protein compare
Pf1N1B4_3011 -0.7 -1.4 Tyrosine recombinase XerD compare
Pf1N1B4_1115 -0.7 -4.3 Dna binding response regulator PrrA (RegA) compare
Pf1N1B4_2105 -0.7 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_3935 -0.7 -1.8 Major facilitator family transporter compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N1B4

For carbon source Sodium Fumarate dibasic across organisms