Experiment set1IT030 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium perchlorate monohydrate 12.5 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14640 +1.0 2.1 UDP-glucose 4-epimerase compare
CA265_RS23305 +0.9 1.9 hypothetical protein compare
CA265_RS24195 +0.8 3.7 TetR family transcriptional regulator compare
CA265_RS25030 +0.8 3.3 hypothetical protein compare
CA265_RS02110 +0.7 2.7 hypothetical protein compare
CA265_RS20610 +0.7 2.4 hypothetical protein compare
CA265_RS19465 +0.7 2.3 protein tyrosine phosphatase compare
CA265_RS04445 +0.6 2.5 hypothetical protein compare
CA265_RS22805 +0.6 4.1 glycosyl transferase compare
CA265_RS25435 +0.6 2.2 hypothetical protein compare
CA265_RS06930 +0.6 2.8 hypothetical protein compare
CA265_RS18115 +0.6 4.3 gliding motility protein GldN compare
CA265_RS23230 +0.6 2.9 hypothetical protein compare
CA265_RS18275 +0.6 2.1 pyrophosphatase compare
CA265_RS20270 +0.6 1.3 methionine--tRNA ligase compare
CA265_RS17285 +0.6 1.6 hypothetical protein compare
CA265_RS24940 +0.6 2.7 hypothetical protein compare
CA265_RS20880 +0.6 3.1 hypothetical protein compare
CA265_RS09725 +0.6 5.2 tolB protein precursor compare
CA265_RS00025 +0.6 1.9 hypothetical protein compare
CA265_RS17025 +0.5 1.6 hypothetical protein compare
CA265_RS19810 +0.5 1.4 hypothetical protein compare
CA265_RS24770 +0.5 1.8 hypothetical protein compare
CA265_RS07535 +0.5 2.1 ATPase compare
CA265_RS03835 +0.5 1.7 hypothetical protein compare
CA265_RS08445 +0.5 1.0 endonuclease compare
CA265_RS15840 +0.5 2.6 3-isopropylmalate dehydratase small subunit compare
CA265_RS08060 +0.5 1.2 hypothetical protein compare
CA265_RS19660 +0.5 2.5 hypothetical protein compare
CA265_RS09555 +0.5 2.0 phage envelope protein compare
CA265_RS18120 +0.5 3.7 gliding motility protein GldM compare
CA265_RS13200 +0.5 2.8 phosphatase PAP2 family protein compare
CA265_RS02045 +0.5 1.1 hypothetical protein compare
CA265_RS10400 +0.5 2.9 histone H1 compare
CA265_RS11900 +0.5 2.2 hypothetical protein compare
CA265_RS21320 +0.5 1.6 hypothetical protein compare
CA265_RS19030 +0.5 3.2 hypothetical protein compare
CA265_RS06585 +0.5 2.7 hypothetical protein compare
CA265_RS22800 +0.5 3.3 glycosyl transferase compare
CA265_RS23820 +0.5 1.5 hypothetical protein compare
CA265_RS11480 +0.5 1.7 VOC family protein compare
CA265_RS18200 +0.5 1.3 DUF4440 domain-containing protein compare
CA265_RS02105 +0.5 2.4 hypothetical protein compare
CA265_RS19330 +0.5 2.9 dTDP-4-dehydrorhamnose reductase compare
CA265_RS19140 +0.5 1.3 tRNA-Ile compare
CA265_RS19165 +0.4 1.6 serine hydroxymethyltransferase compare
CA265_RS04645 +0.4 3.6 cation transporter compare
CA265_RS13720 +0.4 1.3 4-oxalocrotonate tautomerase compare
CA265_RS08070 +0.4 1.0 tRNA-Ser compare
CA265_RS03260 +0.4 2.9 multidrug ABC transporter ATP-binding protein compare
CA265_RS11675 +0.4 3.2 aspartate aminotransferase compare
CA265_RS20350 +0.4 2.4 gliding motility lipoprotein GldH compare
CA265_RS14125 +0.4 1.1 hypothetical protein compare
CA265_RS22985 +0.4 3.4 helicase SNF2 compare
CA265_RS05940 +0.4 1.4 hypothetical protein compare
CA265_RS13970 +0.4 3.8 hypothetical protein compare
CA265_RS23035 +0.4 1.6 four-helix bundle copper-binding protein compare
CA265_RS04635 +0.4 3.7 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS13790 +0.4 1.7 L-rhamnose mutarotase compare
CA265_RS00585 +0.4 3.6 translocation/assembly module TamB compare
CA265_RS00380 +0.4 1.3 hypothetical protein compare
CA265_RS22310 +0.4 2.0 superoxide dismutase compare
CA265_RS11095 +0.4 2.4 hypothetical protein compare
CA265_RS09690 +0.4 1.6 hypothetical protein compare
CA265_RS04560 +0.4 1.0 hypothetical protein compare
CA265_RS20525 +0.4 0.6 hypothetical protein compare
CA265_RS25185 +0.4 0.8 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS03015 +0.4 1.6 tRNA-specific adenosine deaminase compare
CA265_RS12985 +0.4 1.2 hypothetical protein compare
CA265_RS15085 +0.4 2.6 hypothetical protein compare
CA265_RS16485 +0.4 1.7 peptidyl-prolyl cis-trans isomerase compare
CA265_RS11995 +0.4 2.0 RNA polymerase subunit sigma compare
CA265_RS17125 +0.4 1.5 DNA-binding response regulator compare
CA265_RS25200 +0.4 2.5 hypothetical protein compare
CA265_RS11935 +0.4 1.7 hypothetical protein compare
CA265_RS12780 +0.4 0.8 hypothetical protein compare
CA265_RS24355 +0.4 1.4 transcriptional regulator compare
CA265_RS07455 +0.4 0.8 hypothetical protein compare
CA265_RS00395 +0.4 1.5 hypothetical protein compare
CA265_RS07755 +0.4 0.5 hypothetical protein compare
CA265_RS06885 +0.4 0.7 hypothetical protein compare
CA265_RS04790 +0.4 1.7 hypothetical protein compare
CA265_RS14935 +0.4 3.3 hypothetical protein compare
CA265_RS02565 +0.4 1.7 hypothetical protein compare
CA265_RS03280 +0.4 1.6 hypothetical protein compare
CA265_RS12075 +0.4 0.9 hypothetical protein compare
CA265_RS13745 +0.4 2.1 sugar transporter compare
CA265_RS10150 +0.4 1.7 cysteine synthase B compare
CA265_RS09955 +0.4 1.5 response regulator compare
CA265_RS20365 +0.4 0.9 hypothetical protein compare
CA265_RS21030 +0.4 1.8 hypothetical protein compare
CA265_RS21655 +0.4 2.0 LemA family protein compare
CA265_RS02310 +0.3 2.1 hypothetical protein compare
CA265_RS04105 +0.3 2.8 siroheme synthase compare
CA265_RS06365 +0.3 2.7 hypothetical protein compare
CA265_RS04110 +0.3 2.2 phosphoadenosine phosphosulfate reductase compare
CA265_RS18570 +0.3 1.8 hypothetical protein compare
CA265_RS22460 +0.3 2.0 ABC transporter ATP-binding protein compare
CA265_RS00830 +0.3 1.1 hypothetical protein compare
CA265_RS04640 +0.3 2.0 efflux transporter periplasmic adaptor subunit compare
CA265_RS24215 +0.3 2.2 hypothetical protein compare
CA265_RS16820 +0.3 1.3 type I methionyl aminopeptidase compare
CA265_RS23925 +0.3 1.3 endonuclease compare
CA265_RS08665 +0.3 0.7 tRNA-Lys compare
CA265_RS16105 +0.3 1.1 hypothetical protein compare
CA265_RS14940 +0.3 1.7 hypothetical protein compare
CA265_RS10490 +0.3 1.8 PhnA protein compare
CA265_RS21555 +0.3 1.7 hypothetical protein compare
CA265_RS23120 +0.3 1.2 hypothetical protein compare
CA265_RS07515 +0.3 2.1 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS04865 +0.3 1.1 DUF4440 domain-containing protein compare
CA265_RS01260 +0.3 1.8 hypothetical protein compare
CA265_RS18775 +0.3 1.4 hypothetical protein compare
CA265_RS20440 +0.3 2.0 hypothetical protein compare
CA265_RS11975 +0.3 1.6 hypothetical protein compare
CA265_RS23760 +0.3 1.9 lauroyl acyltransferase compare
CA265_RS13950 +0.3 1.5 TspO protein compare
CA265_RS10540 +0.3 0.8 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS17300 +0.3 2.0 hypothetical protein compare
CA265_RS17560 +0.3 2.6 peptidylprolyl isomerase compare
CA265_RS08895 +0.3 2.3 mannose-1-phosphate guanylyltransferase compare
CA265_RS02425 +0.3 1.5 GTP cyclohydrolase compare
CA265_RS09885 +0.3 1.4 hypothetical protein compare
CA265_RS21000 +0.3 1.5 ribosome silencing factor compare
CA265_RS08605 +0.3 2.3 short-chain dehydrogenase compare
CA265_RS13220 +0.3 2.0 hypothetical protein compare
CA265_RS06950 +0.3 2.2 L-glyceraldehyde 3-phosphate reductase compare
CA265_RS12800 +0.3 1.2 NAD(P)H-dependent oxidoreductase compare
CA265_RS23985 +0.3 1.9 gliding motility lipoprotein GldB compare
CA265_RS13010 +0.3 1.4 transcriptional regulator compare
CA265_RS19545 +0.3 1.6 protease compare
CA265_RS25345 +0.3 1.3 hypothetical protein compare
CA265_RS20895 +0.3 2.4 penicillin-binding protein compare
CA265_RS19640 +0.3 1.3 hypothetical protein compare
CA265_RS18865 +0.3 1.8 hypothetical protein compare
CA265_RS16505 +0.3 1.5 purine-nucleoside phosphorylase compare
CA265_RS20920 +0.3 1.7 hypothetical protein compare
CA265_RS24675 +0.3 1.3 RNA polymerase compare
CA265_RS00300 +0.3 1.4 damage-inducible protein DinB compare
CA265_RS06010 +0.3 1.3 hypothetical protein compare
CA265_RS19800 +0.3 1.6 GLPGLI family protein compare
CA265_RS13050 +0.3 1.3 hypothetical protein compare
CA265_RS24965 +0.3 1.8 hypothetical protein compare
CA265_RS09195 +0.3 1.8 Fis family transcriptional regulator compare
CA265_RS22210 +0.3 1.8 hypothetical protein compare
CA265_RS09920 +0.3 1.7 protein tyrosine phosphatase compare
CA265_RS04655 +0.3 1.7 DNA-binding response regulator compare
CA265_RS21865 +0.3 2.1 two-component sensor histidine kinase compare
CA265_RS14825 +0.3 0.5 outer membrane protein assembly factor BamD compare
CA265_RS16995 +0.3 0.7 hypothetical protein compare
CA265_RS04650 +0.3 2.3 two-component sensor histidine kinase compare
CA265_RS23050 +0.3 1.9 hypothetical protein compare
CA265_RS00875 +0.3 1.5 alkaline phosphatase compare
CA265_RS11905 +0.3 1.4 hypothetical protein compare
CA265_RS15830 +0.3 1.5 3-isopropylmalate dehydratase large subunit compare
CA265_RS22790 +0.3 1.6 hypothetical protein compare
CA265_RS06325 +0.3 1.0 DNA starvation/stationary phase protection protein compare
CA265_RS03295 +0.3 2.2 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS24385 +0.3 0.7 GNAT family N-acetyltransferase compare
CA265_RS14650 +0.3 1.3 thiol-disulfide oxidoreductase compare
CA265_RS17685 +0.3 1.5 hypothetical protein compare
CA265_RS14750 +0.3 1.5 energy transducer TonB compare
CA265_RS20315 +0.3 2.5 hypothetical protein compare
CA265_RS22120 +0.3 1.4 hypothetical protein compare
CA265_RS22860 +0.3 1.2 hypothetical protein compare
CA265_RS20780 +0.3 1.7 hypothetical protein compare
CA265_RS01095 +0.3 1.9 transcriptional regulator compare
CA265_RS15855 +0.3 1.4 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
CA265_RS09315 +0.3 2.0 hypothetical protein compare
CA265_RS07905 +0.3 1.7 antitermination protein NusG compare
CA265_RS04040 +0.3 1.1 hypothetical protein compare
CA265_RS06655 +0.3 1.9 hypothetical protein compare
CA265_RS23010 +0.3 2.4 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS02275 +0.3 1.7 helix-turn-helix transcriptional regulator compare
CA265_RS00250 +0.3 1.6 oxidoreductase compare
CA265_RS18090 +0.3 2.4 gliding motility protein compare
CA265_RS08720 +0.3 1.7 hypothetical protein compare
CA265_RS08000 +0.3 2.1 GNAT family N-acetyltransferase compare
CA265_RS12745 +0.3 1.2 NUDIX hydrolase compare
CA265_RS19690 +0.3 1.4 hypothetical protein compare
CA265_RS22970 +0.3 1.8 hypothetical protein compare
CA265_RS23635 +0.3 2.2 gliding motility lipoprotein GldJ compare
CA265_RS22620 +0.3 0.7 hypothetical protein compare
CA265_RS18125 +0.3 1.5 gliding motility protein GldL compare
CA265_RS16620 +0.3 1.5 carbonate dehydratase compare
CA265_RS06360 +0.3 2.4 hypothetical protein compare
CA265_RS25130 +0.3 1.6 hypothetical protein compare
CA265_RS06435 +0.3 1.1 hypothetical protein compare
CA265_RS25395 +0.3 1.3 cysteine hydrolase compare
CA265_RS07880 +0.3 1.7 transcriptional regulator compare
CA265_RS22180 +0.3 1.4 hypothetical protein compare
CA265_RS08565 +0.3 2.1 oxidoreductase compare
CA265_RS18725 +0.3 1.3 short-chain dehydrogenase compare
CA265_RS14580 +0.3 1.6 cytidylate kinase compare
CA265_RS08995 +0.3 2.0 TonB-dependent receptor compare
CA265_RS04095 +0.3 1.8 nitrite reductase compare
CA265_RS13555 +0.3 1.5 hypothetical protein compare
CA265_RS23465 +0.3 1.0 threonine synthase compare
CA265_RS01570 +0.3 2.0 hypothetical protein compare
CA265_RS08225 +0.3 1.1 hydrolase compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Sodium perchlorate monohydrate across organisms