Experiment set1IT030 for Caulobacter crescentus NA1000

Compare to:

L-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00296 +4.6 20.8 phosphate regulon response regulator PhoB compare
CCNA_02037 +3.8 19.3 ATP-dependent endopeptidase Lon compare
CCNA_01217 +2.9 15.8 phosphatidylglycerophosphate synthase compare
CCNA_01583 +2.9 5.8 phosphate-binding protein compare
CCNA_01210 +2.5 5.3 nucleotidyltransferase family protein compare
CCNA_02250 +2.5 5.3 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_01218 +2.1 5.6 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01220 +2.1 7.2 7-keto-8-aminopelargonate synthetase compare
CCNA_03849 +2.0 9.5 fructokinase compare
CCNA_00292 +2.0 3.8 phosphate transport system permease protein pstC compare
CCNA_00397 +1.8 12.6 acetolactate synthase compare
CCNA_00217 +1.8 2.5 thiol:disulfide interchange protein DsbD compare
CCNA_01251 +1.8 6.9 FepC-type transporter protein compare
CCNA_01250 +1.8 10.6 FecCD-family transporter protein compare
CCNA_02458 +1.7 11.5 methylmalonyl-CoA mutase beta subunit compare
CCNA_00766 +1.7 10.2 cobalamin adenosyltransferase family protein compare
CCNA_00805 +1.7 3.4 GTP-binding protein YihA compare
CCNA_01223 +1.7 8.7 acyl-CoA synthetase compare
CCNA_03809 +1.7 8.5 organic solvent resistance transport system permease compare
CCNA_02459 +1.6 12.6 methylmalonyl-CoA mutase alpha subunit compare
CCNA_01222 +1.6 5.9 NADH-ubiquinone oxidoreductase compare
CCNA_01219 +1.6 3.3 putative cytosolic protein compare
CCNA_02252 +1.6 3.3 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_00257 +1.5 5.2 adenosylhomocysteinase compare
CCNA_01628 +1.5 1.3 hypothetical protein compare
CCNA_02126 +1.5 1.5 hypothetical protein compare
CCNA_03150 +1.5 3.7 hypothetical protein compare
CCNA_03983 +1.5 2.2 HicA-related toxin-antitoxin protein compare
CCNA_03672 +1.5 6.7 superoxide dismutase compare
CCNA_01212 +1.5 5.9 dATP pyrophosphohydrolase compare
CCNA_00291 +1.5 8.4 phosphate regulon sensor protein phoR compare
CCNA_03778 +1.4 3.5 integral membrane protein compare
CCNA_02040 +1.4 2.4 phosphoserine phosphatase compare
CCNA_02004 +1.4 2.3 SOS-induced inhibitor of cell division SidA compare
CCNA_00189 +1.3 2.2 zinc-finger domain protein compare
CCNA_00023 +1.3 2.8 putative periplasmic protein compare
CCNA_02164 +1.3 2.8 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_00495 +1.2 3.0 putative membrane protein insertion efficiency factor YidD compare
CCNA_01818 +1.2 5.4 D-alanine aminotransferase compare
CCNA_03873 +1.2 3.8 hypothetical protein compare
CCNA_00395 +1.1 7.8 feruloyl-CoA synthetase compare
CCNA_03424 +1.1 5.1 AAA-family response regulator tacA compare
CCNA_01057 +1.1 5.8 hypothetical protein compare
CCNA_03982 +1.1 1.9 hypothetical protein compare
CCNA_03202 +1.1 7.1 lipid A 3-O-deacylase PagL compare
CCNA_01733 +1.1 6.8 alanine racemase compare
CCNA_03883 +1.1 3.6 hypothetical protein compare
CCNA_03729 +1.1 2.5 transaldolase-like protein compare
CCNA_01249 +1.1 5.2 ABC-transporter substrate binding protein compare
CCNA_00501 +1.0 5.8 glucosyltransferase compare
CCNA_02969 +1.0 4.6 TetR-family transcriptional regulator compare
CCNA_03788 +1.0 4.2 thiol:disulfide interchange protein tlpA compare
CCNA_01754 +1.0 1.2 transglycosylase associated protein compare
CCNA_01457 +1.0 2.1 hypothetical protein compare
CCNA_00698 +1.0 3.9 hypothetical protein compare
CCNA_01826 +1.0 5.1 vitamin B12 receptor compare
CCNA_02101 +1.0 2.0 glyoxalase family protein compare
CCNA_00137 +1.0 4.3 hybrid two-component histidine kinase/receiver protein ShkA compare
CCNA_02808 +1.0 2.9 hypothetical protein compare
CCNA_02534 +1.0 1.4 hypothetical protein compare
CCNA_02255 +1.0 4.7 lysozyme-family localization factor spmX compare
CCNA_R0026 +1.0 1.1 tRNA-Gly compare
CCNA_02254 +1.0 3.7 isovaleryl-CoA dehydrogenase compare
CCNA_02847 +1.0 3.8 cytochrome c-type biogenesis protein ccmH compare
CCNA_00971 +0.9 4.9 hydroxyacylglutathione hydrolase compare
CCNA_02242 +0.9 4.1 PHB granule-associated protein, phasin2 compare
CCNA_02416 +0.9 5.0 DNA-binding protein HU compare
CCNA_00860 +0.9 2.0 holdfast inhibitor protein HfiA compare
CCNA_03258 +0.9 2.6 hypothetical protein compare
CCNA_00897 +0.9 1.4 hypothetical protein compare
CCNA_02110 +0.9 3.2 hypothetical protein compare
CCNA_01216 +0.9 3.0 phosphohydrolase, Icc family compare
CCNA_01772 +0.9 2.7 hypothetical protein compare
CCNA_02135 +0.9 4.5 6-phosphogluconolactonase compare
CCNA_02452 +0.9 2.5 hypothetical protein compare
CCNA_00719 +0.9 4.2 type I secretion adaptor protein hlyD compare
CCNA_02059 +0.9 3.2 ribosomal large subunit pseudouridine synthase C compare
CCNA_03973 +0.9 2.8 hypothetical protein compare
CCNA_03488 +0.9 2.6 hypothetical protein compare
CCNA_00723 +0.9 2.0 glyoxalase family protein compare
CCNA_03910 +0.9 1.0 hypothetical protein compare
CCNA_00097 +0.8 2.8 hypothetical protein compare
CCNA_02677 +0.8 2.1 glutathione S-transferase compare
CCNA_02841 +0.8 2.1 hypothetical protein compare
CCNA_03891 +0.8 1.9 hypothetical protein compare
CCNA_00522 +0.8 2.7 BrnT-related ribonuclease toxin compare
CCNA_00429 +0.8 1.5 hypothetical protein compare
CCNA_02455 +0.8 3.2 conserved integral membrane protein compare
CCNA_01715 +0.8 1.7 GPH-family phosphatase compare
CCNA_03353 +0.8 4.9 metallophosphatase domain protein compare
CCNA_02490 +0.8 2.0 3-ketoacyl-CoA thiolase compare
CCNA_01973 +0.8 1.6 hypothetical protein compare
CCNA_01041 +0.8 1.8 hypothetical protein compare
CCNA_01566 +0.8 2.0 hypothetical protein compare
CCNA_01736 +0.8 2.7 TetR-family transcriptional regulator compare
CCNA_03278 +0.8 3.8 aminobutyraldehyde dehydrogenase compare
CCNA_03810 +0.8 3.8 organic solvent resistance transport system ATP-binding protein compare
CCNA_01657 +0.7 2.1 hypothetical protein compare
CCNA_00177 +0.7 2.1 type II secretion pathway protein I compare
CCNA_03970 +0.7 1.1 hypothetical protein compare
CCNA_01379 +0.7 3.1 type I secretion outer membrane protein rsaFb compare
CCNA_02011 +0.7 3.1 methylmalonyl CoA epimerase compare
CCNA_02349 +0.7 3.3 nucleoside phosphorylase compare
CCNA_01694 +0.7 3.7 CocE/NonD family hydrolase compare
CCNA_01525 +0.7 2.6 flagellar biosynthesis repressor flbT compare
CCNA_03673 +0.7 2.1 hypothetical protein compare
CCNA_00542 +0.7 2.0 hypothetical protein compare
CCNA_01928 +0.7 1.6 conserved ACT domain protein compare
CCNA_03718 +0.7 4.1 NADH-ubiquinone oxidoreductase subunit compare
CCNA_01828 +0.7 2.2 hypothetical protein compare
CCNA_03452 +0.7 1.7 hypothetical protein compare
CCNA_00911 +0.7 3.2 AAA domain ATPase compare
CCNA_02372 +0.7 0.8 hypothetical protein compare
CCNA_03713 +0.7 3.6 RNA polymerase sigma-54 factor rpoN compare
CCNA_00535 +0.7 0.9 hypothetical protein compare
CCNA_00271 +0.7 0.9 hypothetical protein compare
CCNA_01642 +0.7 1.9 gluconate 5-dehydrogenase compare
CCNA_02332 +0.7 1.7 chemotaxis receiver protein cheYIII compare
CCNA_01780 +0.7 4.3 exopolyphosphatase compare
CCNA_03907 +0.7 2.5 hypothetical protein compare
CCNA_02259 +0.7 1.8 hypothetical protein compare
CCNA_03447 +0.7 2.0 hypothetical protein compare
CCNA_00430 +0.7 1.6 hypothetical protein compare
CCNA_01171 +0.7 2.5 histidine phosphotransferase ShpA compare
CCNA_01591 +0.7 1.7 DNA polymerase III epsilon-like protein compare
CCNA_01452 +0.7 2.2 hypothetical protein compare
CCNA_02200 +0.7 2.4 cytochrome c-family protein compare
CCNA_03526 +0.7 1.0 hypothetical protein compare
CCNA_03224 +0.6 0.8 hypothetical protein compare
CCNA_02269 +0.6 3.3 L-aminopeptidase/D-esterase dmpA compare
CCNA_01639 +0.6 1.8 beta-lactamase family protein compare
CCNA_03004 +0.6 1.9 nucleoside/nucleotide kinase compare
CCNA_03585 +0.6 2.5 chemotaxis receiver domain protein CheYIV compare
CCNA_02403 +0.6 2.9 ABC transporter permease protein compare
CCNA_03530 +0.6 2.0 hypothetical protein compare
CCNA_01221 +0.6 1.2 acyl carrier protein compare
CCNA_03740 +0.6 3.2 cysteine synthase compare
CCNA_02429 +0.6 2.3 arsenate reductase compare
CCNA_02406 +0.6 3.3 membrane lipoprotein compare
CCNA_02240 +0.6 2.8 glycerophosphoryl diester phosphodiesterase compare
CCNA_01539 +0.6 2.2 pirin family protein compare
CCNA_02114 +0.6 1.0 hypothetical protein compare
CCNA_03327 +0.6 2.0 hypothetical protein compare
CCNA_02360 +0.6 3.0 glycosyl transferase family 2 protein compare
CCNA_03056 +0.6 1.6 limonene-1,2-epoxide hydrolase compare
CCNA_02404 +0.6 3.1 ABC transporter ATP-binding protein compare
CCNA_02905 +0.6 2.2 very short patch repair (Vsr) endonuclease compare
CCNA_01373 +0.6 1.9 hypothetical protein compare
CCNA_03901 +0.6 1.9 hypothetical protein compare
CCNA_01292 +0.6 1.7 hypothetical protein compare
CCNA_01584 +0.6 4.3 multimodular transpeptidase-transglycosylase PBP 1A compare
CCNA_02831 +0.6 2.8 hypothetical protein compare
CCNA_02104 +0.6 1.3 GIY-YIG domain protein compare
CCNA_02095 +0.6 2.9 NAD/NADH-dependent eicosanoid dehydrogenase compare
CCNA_02539 +0.6 3.2 aspartate aminotransferase compare
CCNA_02012 +0.6 2.9 metal-dependent hydrolase compare
CCNA_01718 +0.6 2.5 RNA polymerase ECF sigma factor compare
CCNA_03275 +0.6 0.8 hypothetical protein compare
CCNA_02506 +0.6 1.4 transposase/integrase-related peptide compare
CCNA_02574 +0.6 2.4 MUG-like uracil-DNA glycosylase family protein compare
CCNA_02632 +0.6 2.6 SOUL domain heme-binding protein compare
CCNA_01717 +0.6 2.1 hypothetical protein compare
CCNA_00226 +0.6 1.8 hypothetical protein compare
CCNA_00235 +0.6 2.0 hypothetical protein compare
CCNA_03857 +0.6 1.0 Tim44-like domain protein compare
CCNA_02778 +0.6 1.9 hypothetical protein compare
CCNA_02091 +0.6 2.3 hypothetical protein compare
CCNA_00081 +0.6 2.1 hypothetical protein compare
CCNA_02154 +0.6 2.2 GCN5-related N-acetyltransferase compare
CCNA_00896 +0.6 1.5 hypothetical protein compare
CCNA_00076 +0.6 2.3 hypothetical protein compare
CCNA_00431 +0.6 2.5 hypothetical protein compare
CCNA_02159 +0.6 1.7 hypothetical protein compare
CCNA_03390 +0.6 2.0 hypothetical protein compare
CCNA_03349 +0.5 0.7 hypothetical protein compare
CCNA_00632 +0.5 1.7 chemotaxis receiver domain protein CheYII compare
CCNA_00848 +0.5 1.0 leucine-responsive regulatory protein compare
CCNA_01225 +0.5 2.3 glycerophosphotransferase-related protein compare
CCNA_00194 +0.5 1.4 Antibiotic biosynthesis monooxygenase family protein compare
CCNA_03450 +0.5 1.3 hypothetical protein compare
CCNA_02160 +0.5 1.6 hypothetical protein compare
CCNA_00417 +0.5 1.9 hypothetical protein compare
CCNA_01245 +0.5 2.6 23S rRNA methyltransferase compare
CCNA_00254 +0.5 2.5 RarD family membrane permease compare
CCNA_01506 +0.5 2.6 cystine transport ATP-binding protein compare
CCNA_00009 +0.5 2.0 alkylated DNA repair protein AlkB compare
CCNA_01060 +0.5 1.2 type I protein secretion ATP-binding protein RsaD compare
CCNA_03499 +0.5 2.2 hypothetical protein compare
CCNA_02228 +0.5 1.8 NTF2 superfamily protein compare
CCNA_02191 +0.5 2.0 hypothetical protein compare
CCNA_00841 +0.5 3.1 carboxylesterase type B compare
CCNA_03008 +0.5 1.7 putative PD-(D/E)xK nuclease protein compare
CCNA_01721 +0.5 1.7 RNA polymerase ECF sigma factor compare
CCNA_03389 +0.5 2.1 ABC transporter ATP-binding cassette domain protein compare
CCNA_03053 +0.5 2.0 dioxygenase compare
CCNA_01569 +0.5 2.0 Helix-turn-helix DNA-binding protein compare
CCNA_00774 +0.5 3.2 ring hydroxylating diooxygenase compare
CCNA_01794 +0.5 1.9 enoyl-CoA hydratase/isomerase family compare
CCNA_01779 +0.5 1.3 hypothetical protein compare
CCNA_03525 +0.5 1.2 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Alanine in Caulobacter crescentus NA1000

For carbon source L-Alanine across organisms