Experiment set1IT030 for Phocaeicola vulgatus CL09T03C04
N-Acetyl-D-Glucosamine 20 mM carbon source
Quality Metrics:
| Time0 | 12/22/21 Bvulgatus_CL09T03C04_ML5_set1 | which Time0s the sample was compared to |
| cor12 | 0.44 | rank correlation(fit1, fit2), where fit1 is fitness for the first half (10-50%) and fit2 is fitness for the second half (50-90%) of each gene |
| maxFit | 2.66 | The maximum fitness value |
| opcor | 0.37 | rank correlation(upstream gene, downstream gene) over pairs that are adjacent and likely to be in the same operon |
| adjcor | 0.10 | like opcor but for adjacent genes that are not on the same strand |
| gccor | -0.09 | linear correlation of gene fitness and gene GC content |
| mad12 | 0.21 | median absolute difference of fit1, fit2 |
| mad12c | 0.84 | median absolute difference of log count for 1st and 2nd half of genes in this sample |
| mad12c_t0 | 0.82 | like mad12c but for the Time0s |
| gMed | 301 | median reads per gene in this sample |
| gMedt0 | 1412 | median reads per gene in the Time0 sample |
| gMean | 558 | mean reads per gene in this sample |
| nMapped | 2.740 M | #reads for this sample that corresponded to a known strain (in millions) |
| nPastEnd | 0.000 M | #reads that corresponded to a strain that has an insertion within the suicide vector instead of within the genome. |
| nGenic | 1.875 M | #reads that lie within central 10-90% of a gene |
| nUsed | 1.867 M | #reads used to estimate gene fitness (genic and enough coverage for strain and for gene) |
Specific Phenotypes
None in this experiment
For Phocaeicola vulgatus CL09T03C04 in carbon source experiments