Experiment set1IT030 for Burkholderia phytofirmans PsJN

Compare to:

LB with Nickel (II) chloride hexahydrate 0.5 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS14865 -5.8 -4.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02860 -4.8 -1.9 membrane protein compare
BPHYT_RS02865 -4.5 -3.1 hypothetical protein compare
BPHYT_RS17700 -2.8 -4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS15415 -2.5 -13.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08850 -2.5 -2.4 transcriptional regulator compare
BPHYT_RS23840 -2.4 -3.3 methyltransferase compare
BPHYT_RS01625 -2.4 -4.8 chemotaxis protein CheY compare
BPHYT_RS18765 -2.2 -8.5 flagellar biosynthesis protein FliS compare
BPHYT_RS06685 -2.2 -3.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS34810 -2.1 -5.2 RND transporter compare
BPHYT_RS16710 -2.1 -2.1 LysR family transcriptional regulator compare
BPHYT_RS17530 -2.0 -6.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03280 -2.0 -2.6 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS02590 -2.0 -7.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16835 -2.0 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15620 -1.9 -4.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33920 -1.9 -8.7 type II citrate synthase compare
BPHYT_RS36275 -1.9 -2.2 hypothetical protein compare
BPHYT_RS12465 -1.9 -3.7 inositol monophosphatase compare
BPHYT_RS05730 -1.9 -5.5 hypothetical protein compare
BPHYT_RS09315 -1.9 -1.4 chemotaxis protein CheY compare
BPHYT_RS17640 -1.8 -3.8 2-alkenal reductase compare
BPHYT_RS04290 -1.8 -2.9 glycosyl transferase family 2 compare
BPHYT_RS04370 -1.8 -2.7 glycosyl transferase compare
BPHYT_RS33850 -1.8 -2.2 sporulation protein compare
BPHYT_RS16270 -1.7 -3.1 phosphoglycerate kinase compare
BPHYT_RS03725 -1.7 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS09515 -1.6 -3.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14855 -1.6 -1.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS09280 -1.6 -1.5 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS16180 -1.6 -1.5 TetR family transcriptional regulator compare
BPHYT_RS34430 -1.5 -1.4 2-keto-4-pentenoate hydratase compare
BPHYT_RS15075 -1.5 -2.6 dihydrokaempferol 4-reductase compare
BPHYT_RS06610 -1.4 -2.0 triosephosphate isomerase compare
BPHYT_RS15615 -1.4 -4.4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS22910 -1.4 -1.6 hypothetical protein compare
BPHYT_RS16840 -1.4 -3.0 transketolase compare
BPHYT_RS02610 -1.4 -3.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS03400 -1.3 -1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS02975 -1.3 -2.5 membrane protein compare
BPHYT_RS08525 -1.3 -1.5 SAM-dependent methyltransferase compare
BPHYT_RS17690 -1.3 -6.8 imidazole glycerol phosphate synthase compare
BPHYT_RS16255 -1.3 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS27175 -1.3 -1.2 DNA-binding protein compare
BPHYT_RS03640 -1.3 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS08235 -1.2 -1.4 nucleoprotein, Hfg, host factor I compare
BPHYT_RS36525 -1.2 -3.9 hypothetical protein compare
BPHYT_RS32880 -1.2 -1.0 alanine acetyltransferase compare
BPHYT_RS18340 -1.2 -1.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04455 -1.2 -1.2 glycosyl transferase compare
BPHYT_RS16675 -1.2 -1.5 dihydroorotase compare
BPHYT_RS04335 -1.2 -1.3 membrane protein compare
BPHYT_RS16880 -1.2 -1.3 malic enzyme compare
BPHYT_RS34805 -1.1 -6.3 ABC transporter compare
BPHYT_RS18760 -1.1 -2.3 flagellar biosynthesis protein FliT compare
BPHYT_RS04285 -1.1 -1.4 rhamnosyltransferase compare
BPHYT_RS23230 -1.1 -1.3 histidine kinase compare
BPHYT_RS16065 -1.1 -1.2 LacI family transcriptional regulator compare
BPHYT_RS06350 -1.1 -1.6 chemotaxis protein CheY compare
BPHYT_RS04965 -1.1 -5.8 ATP-binding protein compare
BPHYT_RS33630 -1.1 -1.9 chromate transporter compare
BPHYT_RS06375 -1.1 -4.1 ribonuclease compare
BPHYT_RS22360 -1.1 -2.5 response regulator receiver compare
BPHYT_RS25815 -1.1 -1.8 deoxyribose-phosphate aldolase compare
BPHYT_RS24500 -1.1 -1.4 histidine kinase compare
BPHYT_RS19085 -1.0 -5.7 flagellin compare
BPHYT_RS04385 -1.0 -3.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS02135 -1.0 -2.1 glyoxylate reductase compare
BPHYT_RS21340 -1.0 -2.5 2OG-Fe(II) oxygenase compare
BPHYT_RS14380 -1.0 -4.6 elongation factor 4 compare
BPHYT_RS33135 -1.0 -1.5 LysR family transcriptional regulator compare
BPHYT_RS16245 -1.0 -4.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08960 -1.0 -0.9 threonine synthase compare
BPHYT_RS08565 -1.0 -1.1 dihydroorotate dehydrogenase compare
BPHYT_RS17035 -1.0 -2.0 sugar kinase compare
BPHYT_RS25870 -1.0 -1.0 type III secretion system ATPase compare
BPHYT_RS27895 -1.0 -2.0 enoyl-CoA hydratase compare
BPHYT_RS17075 -0.9 -2.6 ABC transporter permease compare
BPHYT_RS06190 -0.9 -1.9 heptosyltransferase compare
BPHYT_RS05650 -0.9 -1.6 hypothetical protein compare
BPHYT_RS05010 -0.9 -3.3 RpiR family transcriptional regulator compare
BPHYT_RS05235 -0.9 -1.2 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS06405 -0.9 -5.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS14245 -0.9 -1.1 membrane protein compare
BPHYT_RS09330 -0.9 -6.8 phytoene synthase compare
BPHYT_RS07515 -0.9 -1.9 photosystem reaction center subunit H compare
BPHYT_RS08335 -0.9 -1.3 hypothetical protein compare
BPHYT_RS06990 -0.9 -1.1 membrane protein compare
BPHYT_RS26490 -0.9 -1.2 hypothetical protein compare
BPHYT_RS03730 -0.9 -1.8 transcriptional repressor NrdR compare
BPHYT_RS23525 -0.9 -1.3 hypothetical protein compare
BPHYT_RS18590 -0.9 -0.9 hypothetical protein compare
BPHYT_RS03170 -0.9 -1.7 membrane protein compare
BPHYT_RS07325 -0.9 -1.0 GntR family transcriptional regulator compare
BPHYT_RS14180 -0.9 -1.8 membrane protein compare
BPHYT_RS32150 -0.9 -1.4 hypothetical protein compare
BPHYT_RS28405 -0.9 -3.3 membrane protein compare
BPHYT_RS24315 -0.9 -1.5 phosphoribosyltransferase compare
BPHYT_RS00770 -0.9 -1.0 conjugal transfer protein TraC compare
BPHYT_RS17905 -0.9 -1.4 fimbrial assembly family protein compare
BPHYT_RS01620 -0.9 -5.1 sensor histidine kinase compare
BPHYT_RS31910 -0.9 -1.8 hypothetical protein compare
BPHYT_RS12990 -0.9 -1.9 iron transporter compare
BPHYT_RS26300 -0.8 -1.3 ATP-dependent DNA ligase compare
BPHYT_RS14845 -0.8 -1.9 cysteine synthase compare
BPHYT_RS17685 -0.8 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS01485 -0.8 -1.0 histidine kinase compare
BPHYT_RS24590 -0.8 -1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS06410 -0.8 -2.2 transcriptional regulator compare
BPHYT_RS31050 -0.8 -1.1 epimerase compare
BPHYT_RS17520 -0.8 -3.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS02130 -0.8 -3.1 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS20295 -0.8 -6.3 ligand-gated channel compare
BPHYT_RS02470 -0.8 -2.5 phosphoserine phosphatase compare
BPHYT_RS11020 -0.8 -2.6 transporter compare
BPHYT_RS01585 -0.8 -5.0 major facilitator superfamily protein compare
BPHYT_RS18420 -0.8 -1.8 hypothetical protein compare
BPHYT_RS33690 -0.8 -1.3 molybdate ABC transporter permease compare
BPHYT_RS13390 -0.8 -0.9 IclR family transcriptional regulator compare
BPHYT_RS23395 -0.8 -1.6 glycosyl transferase compare
BPHYT_RS28910 -0.8 -1.6 diguanylate phosphodiesterase compare
BPHYT_RS08765 -0.8 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS02415 -0.8 -3.1 cytochrome C550 compare
BPHYT_RS17525 -0.8 -1.3 glutaredoxin compare
BPHYT_RS18260 -0.8 -5.0 phenylacetic acid degradation protein compare
BPHYT_RS06930 -0.8 -2.0 hypothetical protein compare
BPHYT_RS23270 -0.8 -1.0 enoyl-CoA hydratase compare
BPHYT_RS36435 -0.8 -1.8 hypothetical protein compare
BPHYT_RS03945 -0.8 -1.7 hypothetical protein compare
BPHYT_RS10065 -0.7 -0.9 cytochrome C oxidase subunit I compare
BPHYT_RS33030 -0.7 -0.9 hypothetical protein compare
BPHYT_RS11170 -0.7 -1.1 hypothetical protein compare
BPHYT_RS19545 -0.7 -2.7 nuclear protein SET compare
BPHYT_RS32280 -0.7 -1.9 membrane protein compare
BPHYT_RS08250 -0.7 -1.7 hypothetical protein compare
BPHYT_RS08125 -0.7 -4.7 ATPase compare
BPHYT_RS10135 -0.7 -0.9 hypothetical protein compare
BPHYT_RS06910 -0.7 -1.8 membrane protein compare
BPHYT_RS25270 -0.7 -1.2 multidrug MFS transporter compare
BPHYT_RS17050 -0.7 -1.9 hypothetical protein compare
BPHYT_RS13610 -0.7 -2.2 MerR family transcriptional regulator compare
BPHYT_RS15950 -0.7 -3.9 tyrosine recombinase XerD compare
BPHYT_RS14505 -0.7 -1.0 membrane protein compare
BPHYT_RS26925 -0.7 -0.8 NIPSNAP family containing protein compare
BPHYT_RS21905 -0.7 -0.8 IclR family transcriptional regulator compare
BPHYT_RS29740 -0.7 -3.8 2-aminoethylphosphonate aminotransferase compare
BPHYT_RS03755 -0.7 -1.5 pilus assembly protein PilE compare
BPHYT_RS17445 -0.7 -3.0 GTP-binding protein YchF compare
BPHYT_RS10095 -0.7 -1.9 integrase compare
BPHYT_RS12845 -0.7 -5.7 ATPase compare
BPHYT_RS26855 -0.7 -1.8 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS17885 -0.7 -2.8 3-dehydroquinate synthase compare
BPHYT_RS10395 -0.7 -1.5 sulfonate ABC transporter compare
BPHYT_RS36285 -0.7 -4.5 hypothetical protein compare
BPHYT_RS17715 -0.7 -3.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS35885 -0.7 -2.6 hypothetical protein compare
BPHYT_RS27160 -0.7 -1.3 hypothetical protein compare
BPHYT_RS33765 -0.7 -0.8 membrane protein compare
BPHYT_RS15325 -0.7 -2.3 ribonuclease PH compare
BPHYT_RS14900 -0.7 -1.6 prephenate dehydrogenase compare
BPHYT_RS09525 -0.7 -2.2 toxin HipA compare
BPHYT_RS29750 -0.7 -3.2 phosphoenolpyruvate phosphomutase compare
BPHYT_RS27920 -0.6 -1.0 tricarballylate utilization protein B compare
BPHYT_RS05705 -0.6 -0.9 hypothetical protein compare
BPHYT_RS01425 -0.6 -1.5 3-phosphoglycerate dehydrogenase compare
BPHYT_RS03480 -0.6 -2.0 ferritin compare
BPHYT_RS06435 -0.6 -1.3 hypothetical protein compare
BPHYT_RS07565 -0.6 -2.7 urocanate hydratase compare
BPHYT_RS17380 -0.6 -4.3 ribulose-phosphate 3-epimerase compare
BPHYT_RS34815 -0.6 -1.3 ABC transporter compare
BPHYT_RS11080 -0.6 -1.7 hypothetical protein compare
BPHYT_RS06195 -0.6 -0.9 membrane protein compare
BPHYT_RS12615 -0.6 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS22285 -0.6 -1.9 hypothetical protein compare
BPHYT_RS04595 -0.6 -1.2 cytoplasmic protein compare
BPHYT_RS13220 -0.6 -3.0 phosphomethylpyrimidine synthase compare
BPHYT_RS12530 -0.6 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS30285 -0.6 -1.2 succinate-semialdehyde dehydrogenase compare
BPHYT_RS11400 -0.6 -1.7 hypothetical protein compare
BPHYT_RS01115 -0.6 -1.6 hypothetical protein compare
BPHYT_RS14500 -0.6 -2.2 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS30490 -0.6 -0.6 2-haloalkanoic acid dehalogenase compare
BPHYT_RS26215 -0.6 -1.4 haloacid dehalogenase compare
BPHYT_RS23275 -0.6 -1.8 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS14125 -0.6 -0.8 transcriptional regulator compare
BPHYT_RS12840 -0.6 -2.4 pyruvate dehydrogenase compare
BPHYT_RS25130 -0.6 -3.0 MFS transporter compare
BPHYT_RS05290 -0.6 -0.9 hypothetical protein compare
BPHYT_RS19675 -0.6 -2.1 hypothetical protein compare
BPHYT_RS31205 -0.6 -1.2 peptide ABC transporter ATP-binding protein compare
BPHYT_RS21445 -0.6 -1.8 sugar ABC transporter ATP-binding protein compare
BPHYT_RS22295 -0.6 -0.9 LysR family transcriptional regulator compare
BPHYT_RS10245 -0.6 -2.1 import inner membrane translocase subunit Tim44 compare
BPHYT_RS12060 -0.6 -1.1 hypothetical protein compare
BPHYT_RS18985 -0.6 -1.1 hypothetical protein compare
BPHYT_RS10300 -0.6 -1.8 racemase compare
BPHYT_RS10645 -0.6 -0.8 cyanate hydratase compare
BPHYT_RS11255 -0.6 -1.8 AsnC family transcriptional regulator compare
BPHYT_RS27640 -0.6 -1.5 acetoacetyl-CoA reductase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms