Experiment set1IT030 for Burkholderia phytofirmans PsJN

Compare to:

LB with Nickel (II) chloride hexahydrate 0.5 mM

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS01790 +1.6 11.8 LuxR family transcriptional regulator compare
BPHYT_RS01795 +1.6 11.4 histidine kinase compare
BPHYT_RS03110 +1.4 3.3 MarR family transcriptional regulator compare
BPHYT_RS33535 +1.4 12.6 RNA polymerase sigma factor RpoD compare
BPHYT_RS33540 +1.3 2.4 hypothetical protein compare
BPHYT_RS20095 +1.2 1.9 transcriptional regulator compare
BPHYT_RS19025 +1.2 5.2 transcriptional regulator compare
BPHYT_RS33515 +1.1 9.2 porin compare
BPHYT_RS20515 +1.1 3.6 alpha/beta hydrolase compare
BPHYT_RS27390 +1.1 3.5 hydroxyacid dehydrogenase compare
BPHYT_RS35310 +1.1 1.4 GCN5 family N-acetyltransferase compare
BPHYT_RS10475 +1.1 2.2 mammalian cell entry protein compare
BPHYT_RS09310 +1.0 5.3 sensor histidine kinase compare
BPHYT_RS25095 +1.0 2.5 AraC family transcriptional regulator compare
BPHYT_RS34745 +1.0 2.0 hypothetical protein compare
BPHYT_RS25005 +1.0 1.0 FMN reductase compare
BPHYT_RS26975 +1.0 3.1 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS08150 +1.0 1.4 membrane protein compare
BPHYT_RS34780 +0.9 4.5 phytoene synthase compare
BPHYT_RS01435 +0.9 8.5 LysR family transcriptional regulator compare
BPHYT_RS18825 +0.9 2.9 flagellar biosynthesis protein FliP compare
BPHYT_RS16335 +0.9 1.5 membrane protein compare
BPHYT_RS12280 +0.9 1.9 RNA helicase compare
BPHYT_RS34900 +0.9 2.4 hypothetical protein compare
BPHYT_RS05610 +0.9 6.3 DNA-cytosine methyltransferase compare
BPHYT_RS29605 +0.8 2.1 hypothetical protein compare
BPHYT_RS03655 +0.8 1.7 membrane protein compare
BPHYT_RS11215 +0.8 5.8 ribose ABC transporter ATPase compare
BPHYT_RS21470 +0.8 2.0 6-hydroxynicotinate reductase compare
BPHYT_RS26910 +0.8 1.6 hypothetical protein compare
BPHYT_RS31385 +0.8 1.9 ketoacyl reductase compare
BPHYT_RS07190 +0.8 2.7 acetyltransferase compare
BPHYT_RS27155 +0.8 1.9 peroxiredoxin compare
BPHYT_RS21725 +0.8 0.6 taurine ABC transporter substrate-binding protein compare
BPHYT_RS11765 +0.8 1.1 polyamine ABC transporter permease compare
BPHYT_RS32210 +0.8 0.8 hypothetical protein compare
BPHYT_RS21585 +0.8 2.0 short-chain dehydrogenase compare
BPHYT_RS13915 +0.8 1.4 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS13320 +0.8 1.1 allantoate amidohydrolase compare
BPHYT_RS04710 +0.7 1.4 hypothetical protein compare
BPHYT_RS23155 +0.7 1.4 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS24285 +0.7 1.5 TetR family transcriptional regulator compare
BPHYT_RS05905 +0.7 1.2 hypothetical protein compare
BPHYT_RS32595 +0.7 2.0 hypothetical protein compare
BPHYT_RS27560 +0.7 1.2 histidine kinase compare
BPHYT_RS13760 +0.7 3.3 hypothetical protein compare
BPHYT_RS30785 +0.7 2.3 alcohol dehydrogenase compare
BPHYT_RS31030 +0.7 3.2 tyrosine protein kinase compare
BPHYT_RS20115 +0.7 2.3 transcriptional regulator compare
BPHYT_RS10850 +0.7 1.0 LysR family transcriptional regulator compare
BPHYT_RS26050 +0.7 1.4 ABC transporter permease compare
BPHYT_RS35800 +0.7 1.7 TetR family transcriptional regulator compare
BPHYT_RS10945 +0.7 1.2 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS36480 +0.7 1.7 hypothetical protein compare
BPHYT_RS33460 +0.7 1.2 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS10260 +0.7 1.5 hypothetical protein compare
BPHYT_RS30100 +0.7 0.9 copper oxidase compare
BPHYT_RS00150 +0.7 2.2 DEAD/DEAH box helicase compare
BPHYT_RS22940 +0.7 1.4 pilus assembly protein TadE compare
BPHYT_RS20185 +0.7 1.6 sugar transferase compare
BPHYT_RS14400 +0.7 1.4 anti-sigma factor compare
BPHYT_RS00900 +0.7 1.8 beta-lactamase compare
BPHYT_RS24350 +0.7 2.2 hypothetical protein compare
BPHYT_RS10540 +0.7 1.0 secretion protein compare
BPHYT_RS31345 +0.7 2.0 malonate transporter compare
BPHYT_RS30085 +0.7 1.2 hypothetical protein compare
BPHYT_RS23030 +0.7 1.2 gluconate 2-dehydrogenase compare
BPHYT_RS22030 +0.7 2.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS18780 +0.7 3.2 flagellar motor switch protein FliG compare
BPHYT_RS10470 +0.6 2.0 hypothetical protein compare
BPHYT_RS25500 +0.6 1.3 hypothetical protein compare
BPHYT_RS33385 +0.6 1.3 major facilitator superfamily protein compare
BPHYT_RS09355 +0.6 1.8 LysR family transcriptional regulator compare
BPHYT_RS26950 +0.6 4.0 MFS transporter compare
BPHYT_RS35480 +0.6 1.8 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS27495 +0.6 1.1 hypothetical protein compare
BPHYT_RS26205 +0.6 2.5 phosphoketolase compare
BPHYT_RS26015 +0.6 2.0 rod shape-determining protein MreB compare
BPHYT_RS08405 +0.6 1.3 hypothetical protein compare
BPHYT_RS21910 +0.6 2.0 ABC transporter permease compare
BPHYT_RS03645 +0.6 1.3 tRNA dimethylallyltransferase compare
BPHYT_RS29695 +0.6 1.4 hypothetical protein compare
BPHYT_RS30610 +0.6 1.3 major facilitator transporter compare
BPHYT_RS34490 +0.6 1.0 hypothetical protein compare
BPHYT_RS13430 +0.6 1.8 radical SAM protein compare
BPHYT_RS31890 +0.6 1.4 transposase compare
BPHYT_RS03875 +0.6 1.5 dehydrogenase compare
BPHYT_RS35675 +0.6 1.3 short-chain dehydrogenase compare
BPHYT_RS07130 +0.6 1.3 biopolymer transporter ExbD compare
BPHYT_RS16195 +0.6 2.7 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS07860 +0.6 1.7 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS23650 +0.6 0.8 hypothetical protein compare
BPHYT_RS17800 +0.6 2.1 hypothetical protein compare
BPHYT_RS22510 +0.6 2.6 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BPHYT_RS28215 +0.6 2.1 D-ribose transporter ATP binding protein compare
BPHYT_RS29945 +0.6 0.9 histidine kinase compare
BPHYT_RS30425 +0.6 1.3 LysR family transcriptional regulator compare
BPHYT_RS23670 +0.6 3.0 AsnC family transcriptional regulator compare
BPHYT_RS28485 +0.6 1.2 GntR family transcriptional regulator compare
BPHYT_RS08595 +0.6 2.2 multidrug transporter compare
BPHYT_RS33965 +0.6 1.7 methylcitrate synthase compare
BPHYT_RS35730 +0.6 2.9 hypothetical protein compare
BPHYT_RS30860 +0.6 1.7 sugar ABC transporter permease compare
BPHYT_RS04945 +0.6 5.5 membrane protein compare
BPHYT_RS17825 +0.6 0.8 transcriptional regulator compare
BPHYT_RS15435 +0.6 2.9 ethyl tert-butyl ether degradation EthD compare
BPHYT_RS16570 +0.6 3.2 glutathione S-transferase compare
BPHYT_RS08685 +0.6 2.5 hypothetical protein compare
BPHYT_RS29920 +0.6 0.8 hypothetical protein compare
BPHYT_RS14255 +0.6 4.8 ABC transporter compare
BPHYT_RS11795 +0.6 1.1 membrane protein compare
BPHYT_RS28305 +0.6 1.5 protein tyrosine phosphatase compare
BPHYT_RS22180 +0.6 1.6 hypothetical protein compare
BPHYT_RS27370 +0.6 1.4 CoA transferase compare
BPHYT_RS24205 +0.6 1.8 aldolase compare
BPHYT_RS05520 +0.6 2.6 transcriptional regulator compare
BPHYT_RS27445 +0.6 1.3 hypothetical protein compare
BPHYT_RS02300 +0.6 1.1 acid shock protein compare
BPHYT_RS36305 +0.6 3.3 hypothetical protein compare
BPHYT_RS25450 +0.6 1.0 membrane protein compare
BPHYT_RS34665 +0.6 1.7 hypothetical protein compare
BPHYT_RS11235 +0.6 0.8 hypothetical protein compare
BPHYT_RS13815 +0.6 2.4 hypothetical protein compare
BPHYT_RS36310 +0.6 3.1 hypothetical protein compare
BPHYT_RS32155 +0.6 3.2 type IV secretion system protein VirB11 compare
BPHYT_RS04950 +0.6 4.4 hypothetical protein compare
BPHYT_RS04015 +0.6 1.1 glycosyl transferase compare
BPHYT_RS04585 +0.6 1.9 hypothetical protein compare
BPHYT_RS35405 +0.6 1.4 hypothetical protein compare
BPHYT_RS20520 +0.6 1.0 transcriptional regulator compare
BPHYT_RS01965 +0.6 1.2 tRNA-Ala compare
BPHYT_RS35770 +0.5 1.0 glyoxalase compare
BPHYT_RS23705 +0.5 4.5 hypothetical protein compare
BPHYT_RS20330 +0.5 2.7 IclR family transcriptional regulator compare
BPHYT_RS00295 +0.5 1.5 hypothetical protein compare
BPHYT_RS32165 +0.5 2.4 type IV secretion system protein VirB9 compare
BPHYT_RS31830 +0.5 1.6 hypothetical protein compare
BPHYT_RS23370 +0.5 1.2 glycosyl transferase family 1 compare
BPHYT_RS22215 +0.5 2.3 hypothetical protein compare
BPHYT_RS18945 +0.5 2.8 flagellar biosynthesis protein FlhB compare
BPHYT_RS18635 +0.5 1.5 LamB/YcsF family protein compare
BPHYT_RS20055 +0.5 1.5 hypothetical protein compare
BPHYT_RS28190 +0.5 1.5 porin compare
BPHYT_RS24255 +0.5 1.8 hypothetical protein compare
BPHYT_RS35575 +0.5 2.0 transcriptional regulator compare
BPHYT_RS26970 +0.5 2.8 L-lactate dehydrogenase, LldF subunit (from data) compare
BPHYT_RS26570 +0.5 0.9 5'-nucleotidase compare
BPHYT_RS25210 +0.5 0.8 drug:proton antiporter compare
BPHYT_RS13170 +0.5 1.5 ATPase compare
BPHYT_RS25000 +0.5 1.0 MFS transporter compare
BPHYT_RS34185 +0.5 2.6 cold-shock protein compare
BPHYT_RS02395 +0.5 2.7 ABC transporter compare
BPHYT_RS10705 +0.5 1.9 MFS transporter compare
BPHYT_RS19985 +0.5 0.8 CoA-transferase compare
BPHYT_RS07665 +0.5 1.7 hypothetical protein compare
BPHYT_RS02970 +0.5 4.3 excinuclease ABC subunit A compare
BPHYT_RS24915 +0.5 3.1 ubiquinol oxidase subunit II compare
BPHYT_RS07755 +0.5 4.1 diguanylate cyclase compare
BPHYT_RS14120 +0.5 1.8 chemotaxis protein CheY compare
BPHYT_RS11505 +0.5 2.4 sugar ABC transporter permease compare
BPHYT_RS02480 +0.5 1.4 alkaline phosphatase compare
BPHYT_RS01950 +0.5 1.4 phosphoheptose isomerase compare
BPHYT_RS12535 +0.5 0.7 membrane protein compare
BPHYT_RS31020 +0.5 1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS16340 +0.5 2.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS22860 +0.5 0.8 chemotaxis protein CheY compare
BPHYT_RS12550 +0.5 0.8 GTP-binding protein HflX compare
BPHYT_RS03410 +0.5 1.8 queuine tRNA-ribosyltransferase compare
BPHYT_RS10750 +0.5 0.8 LysR family transcriptional regulator compare
BPHYT_RS07480 +0.5 0.9 FAD-dependent oxidoreductase compare
BPHYT_RS14250 +0.5 4.1 glycosyl transferase compare
BPHYT_RS13565 +0.5 1.4 bacterioferritin compare
BPHYT_RS31465 +0.5 0.9 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS29820 +0.5 1.4 hypothetical protein compare
BPHYT_RS23605 +0.5 1.7 hypothetical protein compare
BPHYT_RS30880 +0.5 1.3 peptidase S13 compare
BPHYT_RS09885 +0.5 2.0 isomerase compare
BPHYT_RS13835 +0.5 0.8 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS26880 +0.5 1.2 ketosteroid isomerase compare
BPHYT_RS28720 +0.5 1.9 shikimate dehydrogenase compare
BPHYT_RS15455 +0.5 2.3 hypothetical protein compare
BPHYT_RS36220 +0.5 0.7 hypothetical protein compare
BPHYT_RS00585 +0.5 1.4 hypothetical protein compare
BPHYT_RS25645 +0.5 1.5 dehydrogenase compare
BPHYT_RS04060 +0.5 2.0 glycosyl transferase compare
BPHYT_RS29090 +0.5 1.8 oxidoreductase compare
BPHYT_RS22865 +0.5 1.0 ATPase compare
BPHYT_RS08700 +0.5 2.0 tRNA-dihydrouridine synthase A compare
BPHYT_RS04590 +0.5 2.8 virulence protein SciE type compare
BPHYT_RS22390 +0.5 2.8 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS06865 +0.5 2.7 MerR family transcriptional regulator compare
BPHYT_RS25655 +0.5 1.5 short-chain dehydrogenase compare
BPHYT_RS35215 +0.5 0.7 dehydrogenase compare
BPHYT_RS30795 +0.5 0.5 short-chain dehydrogenase compare
BPHYT_RS07760 +0.5 1.4 diguanylate phosphodiesterase compare
BPHYT_RS03635 +0.5 2.1 ABC transporter permease compare
BPHYT_RS23035 +0.5 1.2 hypothetical protein compare
BPHYT_RS07900 +0.5 1.1 hypothetical protein compare
BPHYT_RS27450 +0.5 1.8 alpha/beta hydrolase compare
BPHYT_RS20025 +0.5 1.4 crotonase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms